NO08G00800, NO08G00800 (gene) Nannochloropsis oceanica

Overview
NameNO08G00800
Unique NameNO08G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1737
Alignment locationchr8:263810..265546 -

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Properties
Property NameValue
DescriptionPre-rrna-processing protein esf2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:263810..265546 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO08G00800 vs. NCBI_GenBank
Match: EWM26550.1 (pre-rrna-processing protein esf2 [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 1.700e-64
Identity = 174/257 (67.70%), Postives = 190/257 (73.93%), Query Frame = 0
Query:  138 KTDHLKKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELEG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFRVVRRFRQVAPLGDGPGSAV-ARE------GXXXXXXXXXXXXXGGMDKELLKAVFQQPR 387
            KT+ LK+EA++YRDEIARRGVVYLSSLPP+MKPAKVKHLLEK  P+TRLYMVEE                  YVEGWVEF++K +AK++A  LNGSLVGGKK NFYHDDMW MKYL+GF W HLTEKLAYERRVREQKLR+EM+QAKKENAAFVGLVEKK+ELEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           APL DG    V ARE      G              GMDKELLKAVFQ+ R
Sbjct:  160 KTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRRGEGMDKELLKAVFQEAR 416          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: GAX98457.1 (pre-rRNA-processing protein ESF2 [Pythium insidiosum])

HSP 1 Score: 179.5 bits (454), Expect = 2.000e-41
Identity = 81/158 (51.27%), Postives = 112/158 (70.89%), Query Frame = 0
Query:  144 KEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            K+ + YR+  A+RGVVY+S +PPFMKP K+KHLL ++G I R+Y+V E                  Y EGW+EF++K +AK +A  LN   +GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+REQKLR+E+ QAKKEN A++  VE+ ++ +
Sbjct:   33 KKLEEYRERAAKRGVVYISRVPPFMKPEKLKHLLGQYGAINRVYLVPEDKAQQKRRVAAGGNRKTKYTEGWIEFEDKKVAKSVAAMLNTKQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIREQKLRMEIAQAKKENDAYLERVEQSKQFQ 190          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: XP_002907063.1 (pre-rRNA-processing protein ESF2 [Phytophthora infestans T30-4] >EEY63627.1 pre-rRNA-processing protein ESF2 [Phytophthora infestans T30-4])

HSP 1 Score: 177.2 bits (448), Expect = 1.000e-40
Identity = 78/166 (46.99%), Postives = 119/166 (71.69%), Query Frame = 0
Query:  136 KSKTDHLKKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            K+  D  +++ ++++++  RRGVVY++ +PPFMKP K++HLL K+G + R+Y+V E                  Y EGW+EF+ K +AK++A+ LN + +GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:   16 KALADLSREKMEQFKEKAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 181          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: ETK93746.1 (hypothetical protein L915_03120 [Phytophthora parasitica] >ETL47124.1 hypothetical protein L916_03091 [Phytophthora parasitica] >ETO82530.1 hypothetical protein F444_03307 [Phytophthora parasitica P1976] >ETP23666.1 hypothetical protein F441_03226 [Phytophthora parasitica CJ01A1] >ETP51681.1 hypothetical protein F442_03221 [Phytophthora parasitica P10297])

HSP 1 Score: 176.4 bits (446), Expect = 1.700e-40
Identity = 76/159 (47.80%), Postives = 118/159 (74.21%), Query Frame = 0
Query:  143 KKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            +++ ++++++  RRGVVY++ +PPFMKP K+++LL K+G + R+Y+V E                  Y EGW+EF++K +AK++A+ LN +L+GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:   23 REKMEQFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 181          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: ETM00237.1 (hypothetical protein L917_03020 [Phytophthora parasitica])

HSP 1 Score: 175.6 bits (444), Expect = 2.900e-40
Identity = 76/155 (49.03%), Postives = 115/155 (74.19%), Query Frame = 0
Query:  147 QRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            ++++++  RRGVVY++ +PPFMKP K+++LL K+G + R+Y+V E                  Y EGW+EF++K +AK++A+ LN +L+GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:    2 EQFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 156          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: XP_008900442.1 (hypothetical protein PPTG_07825 [Phytophthora parasitica INRA-310] >ETN14173.1 hypothetical protein PPTG_07825 [Phytophthora parasitica INRA-310] >KUF76808.1 Pre-rRNA-processing protein ESF2 [Phytophthora nicotianae])

HSP 1 Score: 175.6 bits (444), Expect = 2.900e-40
Identity = 75/159 (47.17%), Postives = 118/159 (74.21%), Query Frame = 0
Query:  143 KKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            +++ ++++++  RRGVVY++ +PPFMKP K+++L+ K+G + R+Y+V E                  Y EGW+EF++K +AK++A+ LN +L+GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:   23 REKMEQFKEKAERRGVVYIARVPPFMKPEKLRYLIGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 181          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: ETI53895.1 (hypothetical protein F443_03240 [Phytophthora parasitica P1569])

HSP 1 Score: 174.5 bits (441), Expect = 6.500e-40
Identity = 75/159 (47.17%), Postives = 117/159 (73.58%), Query Frame = 0
Query:  143 KKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            +++ ++++++  RRGVVY++ +PPFMKP K+++LL K+G + R+Y+V E                  Y EGW+EF++K +AK++A+ LN +L+GG+KR++YHDDMW +KYLKGF W HLTEK+AYE  +R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:   23 REKMEQFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENHIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 181          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: ETM53431.1 (hypothetical protein L914_03094 [Phytophthora parasitica])

HSP 1 Score: 174.5 bits (441), Expect = 6.500e-40
Identity = 75/159 (47.17%), Postives = 117/159 (73.58%), Query Frame = 0
Query:  143 KKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            +++ ++++++  RRGVVY++ +PPFMKP K+++LL K+G + R+Y+V E                  Y EGW+EF++K +AK++A+ LN +L+GG+KR++YHDDMW +KYLKGF W HLTEK+AYE  +R+QKLR+E+ QAKKEN A++  VE+ ++ E
Sbjct:   23 REKMEQFKEKAERRGVVYIARVPPFMKPEKLRYLLGKYGELNRIYLVPEDEALHKKRVSSGGNRRQKYTEGWIEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENHIRDQKLRMEIAQAKKENEAYLERVEQSKQFE 181          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: OQR82533.1 (pre-rRNA-processing protein ESF2 [Achlya hypogyna])

HSP 1 Score: 171.0 bits (432), Expect = 7.200e-39
Identity = 79/152 (51.97%), Postives = 108/152 (71.05%), Query Frame = 0
Query:  150 RDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            R + +++GVVY+S +PPFMKP KV+HLL ++G I R+Y+VEE                  + EGW+EF  K +AK++A  LN   +GGKKR FY+DD+W +KYLKGF W HLTEK+AYE RVR+QKLR+E+ QA KENAAF+  VE+ ++L+
Sbjct:  172 RKKESKKGVVYMSRVPPFMKPEKVRHLLSQYGDIERIYLVEEDKTHRKKRLKAGGNKKVNFTEGWIEFSHKSVAKRVAAALNTKPMGGKKRGFYYDDIWNLKYLKGFKWAHLTEKIAYENRVRDQKLRLEIAQAAKENAAFMERVEQSKQLD 323          
BLAST of NO08G00800 vs. NCBI_GenBank
Match: XP_009520186.1 (hypothetical protein PHYSODRAFT_284998 [Phytophthora sojae] >EGZ24898.1 hypothetical protein PHYSODRAFT_284998 [Phytophthora sojae])

HSP 1 Score: 170.2 bits (430), Expect = 1.200e-38
Identity = 74/159 (46.54%), Postives = 115/159 (72.33%), Query Frame = 0
Query:  143 KKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEXXXXXXXXXXXXXXXXXXYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELE 302
            +++ ++++++  RRGVVY++ +PPFMKP K++ LL K+G + R+Y+V E                  Y EGW+EF++K  AK++A+ LN + +GG+KR++YHDDMW +KYLKGF W HLTEK+AYE R+R+QKLR+E+ QAKKEN A++  V++ ++ E
Sbjct:   24 REKMEQFKEKAERRGVVYIARVPPFMKPEKLRSLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRQKYTEGWIEFEDKKEAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFE 182          
The following BLAST results are available for this feature:
BLAST of NO08G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26550.11.700e-6467.70pre-rrna-processing protein esf2 [Nannochloropsis ... [more]
GAX98457.12.000e-4151.27pre-rRNA-processing protein ESF2 [Pythium insidios... [more]
XP_002907063.11.000e-4046.99pre-rRNA-processing protein ESF2 [Phytophthora inf... [more]
ETK93746.11.700e-4047.80hypothetical protein L915_03120 [Phytophthora para... [more]
ETM00237.12.900e-4049.03hypothetical protein L917_03020 [Phytophthora para... [more]
XP_008900442.12.900e-4047.17hypothetical protein PPTG_07825 [Phytophthora para... [more]
ETI53895.16.500e-4047.17hypothetical protein F443_03240 [Phytophthora para... [more]
ETM53431.16.500e-4047.17hypothetical protein L914_03094 [Phytophthora para... [more]
OQR82533.17.200e-3951.97pre-rRNA-processing protein ESF2 [Achlya hypogyna][more]
XP_009520186.11.200e-3846.54hypothetical protein PHYSODRAFT_284998 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008978NSK008978Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00800.1NO08G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|511210gene_3409Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100084g19gene3965Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00800.1NO08G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00800 ID=NO08G00800|Name=NO08G00800|organism=Nannochloropsis oceanica|type=gene|length=1737bp
ATAAACTGCCACCATGCATTCTCCCCACCTGACTTGTTAATGGTCGACAA
TGACCCTTTTGAAATGTTGATAAGTAAAGATGCTCGACCAAGATAAATAT
CGATTTCACAGAATAATCAATCAACCCATCGGTCAATCGAAATCATTATG
TTTCACTGTCGCTTTGAGCAAGCCGTGGTCCGTGGTTTTTATTTCCATAC
AGGGGAGGTTTGAGAAGTGAAATGAAATAATTTTAAAAAACAAGGACAAC
AAAGTGAGCCTTATATGTACCAGAACGACTTCTCCCAAAGTACTTTCTAG
ATACTTTCGATCCCAACAAGACGTCTCCTATTACCATCAGGCACGTATAG
GTAGGGACGTATCTCGGCGGTGACATCCTCTGGCCGACGGTTGGCAGCGC
CGCACCCACTTCATTTCTTTCCTCTCTGTCCTGTAAAACGACATGACGCT
CAGCACTTCTTACGCTCAATCCTACTTTCGTCTTATCTCATCCCTCCAGG
CGCAGGTGTACATCTTTCCAAGTGTTACAGCCATAATCATTTTTATTGGC
AAATATCCGCGAGCCTTCGAACCATGGCAAAGAGCAAGACGAGCAGCAAC
AAGGAAGGCTTGGTAAAAAGCCAGAAGCCACATCACCGCCATCACCACCA
CCACCACCAGCAGCAGCAGCAGCAGCAGCAGGTAAGCGAGAAAATCAAAA
GGAAGGAACCTCTGCAGCCTTCCCCGGATGAAGAAGAGGAAAAGGAGGGA
GAGGAAGAGGAGGGGGAGAAGGAGACGTCTAGATCTGGTGAGGAGGAGGA
GAAGGAACAAGGGGAGGAGGAGGAGGAGGAGGAGGACAAGGAGAATGAAG
AAGACGATGAGGACGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAACT
GACGAGGACGACGACAATCTTGCGGACGACGAACAGGTCTCTTCCCTCCT
TCTCCCCTCCACCTCCACCAGCAAAGACAAATCTAAAACCGATCACCTCA
AAAAAGAGGCCCAGCGGTATCGTGACGAGATTGCTCGTCGTGGTGTCGTC
TATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAAAGTCAAGCACTT
ACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGGTGGAAGAAGACG
CAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAACAAAAAGAAGAAG
TACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCTAGCAAAGCAGAT
TGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGAAGCGGAATTTTT
ACCATGATGACATGTGGACGATGAAATATTTAAAGGGATTCAATTGGGGG
CATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAGGGAGCAAAAGTT
GAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGGCCTTCGTGGGCT
TGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGGCGGAGGAGGAGG
GAGGGGAAGGAAGGAAAGGAAGGGGAGAGGAAGAGGAAGGGGGATGAGAG
CGAGGAAGTAAGGGAGGAGTTTCGTGTGGTGCGACGGTTTCGGCAGGTGG
CCCCTCTGGGAGATGGGCCTGGCTCGGCGGTCGCAAGGGAGGGAGGAAGG
AAGGGAGGGAGGAAAGGTGGGGAGAGGGGGGAGGGGGGGATGGACAAAGA
ATTGCTTAAGGCGGTGTTTCAACAGCCGAGAACGTGA
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protein sequence of NO08G00800.1

>NO08G00800.1-protein ID=NO08G00800.1-protein|Name=NO08G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAKSKTSSNKEGLVKSQKPHHRHHHHHHQQQQQQQQVSEKIKRKEPLQPS
PDEEEEKEGEEEEGEKETSRSGEEEEKEQGEEEEEEEDKENEEDDEDEEE
EEEEEEEETDEDDDNLADDEQVSSLLLPSTSTSKDKSKTDHLKKEAQRYR
DEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEDAAMRKRRV
KGGGNKKKKYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTM
KYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKREL
EGMEGRRRREGKEGKEGERKRKGDESEEVREEFRVVRRFRQVAPLGDGPG
SAVAREGGRKGGRKGGERGEGGMDKELLKAVFQQPRT*
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Synonyms
Publications