NO08G00800.1, NO08G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00800.1
Unique NameNO08G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1737
Alignment locationchr8:263810..265546 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:263810..265546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00800.1 vs.
Match: EWM26550.1 (pre-rrna-processing protein esf2 [Nannochloropsis gaditana])

HSP 1 Score: 340.1 bits (871), Expect = 8.900e-90
Identity = 186/258 (72.09%), Postives = 212/258 (82.17%), Query Frame = 0 
Query:  138 KTDHLKKEAQRYRDEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEDAAMRKRRVKGGGNKKKKYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELEGMEGRRRREGKEG-KEGERKRKGDESEEVREEFRVVRRFRQVAPLGDGPGSAV-AREG-------GRKGGRKGGERGEGGMDKELLKAVFQQPR 387
            KT+ LK+EA++YRDEIARRGVVYLSSLPP+MKPAKVKHLLEK  P+TRLYMVEED  +RKRR+KGGGNKKKKYVEGWVEF++K +AK++A  LNGSLVGGKK NFYHDDMW MKYL+GF W HLTEKLAYERRVREQKLR+EM+QAKKENAAFVGLVEKK+ELEGME RRR+EGKEG +  +   +  E  E R++ RV+RRFRQVAPL DG    V AREG       G + G K   RGE GMDKELLKAVFQ+ R
Sbjct:  160 KTERLKREARQYRDEIARRGVVYLSSLPPYMKPAKVKHLLEKMAPVTRLYMVEEDVTIRKRRIKGGGNKKKKYVEGWVEFQDKRMAKEVAGALNGSLVGGKKHNFYHDDMWVMKYLRGFKWSHLTEKLAYERRVREQKLRMEMLQAKKENAAFVGLVEKKKELEGMEERRRKEGKEGRRRDDEVGEVGEGRETRKDLRVLRRFRQVAPLRDGGERGVAAREGAEGLTGEGLESGGKKRRRGE-GMDKELLKAVFQEAR 416
The following BLAST results are available for this feature:
BLAST of NO08G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26550.18.900e-9072.09pre-rrna-processing protein esf2 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00800NO08G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00800.1NO08G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00800.1.cds1NO08G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00800.1 ID=NO08G00800.1|Name=NO08G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
ATAAACTGCCACCATGCATTCTCCCCACCTGACTTGTTAATGGTCGACAA
TGACCCTTTTGAAATGTTGATAAGTAAAGATGCTCGACCAAGATAAATAT
CGATTTCACAGAATAATCAATCAACCCATCGGTCAATCGAAATCATTATG
TTTCACTGTCGCTTTGAGCAAGCCGTGGTCCGTGGTTTTTATTTCCATAC
AGGGGAGGTTTGAGAAGTGAAATGAAATAATTTTAAAAAACAAGGACAAC
AAAGTGAGCCTTATATGTACCAGAACGACTTCTCCCAAAGTACTTTCTAG
ATACTTTCGATCCCAACAAGACGTCTCCTATTACCATCAGGCACGTATAG
GTAGGGACGTATCTCGGCGGTGACATCCTCTGGCCGACGGTTGGCAGCGC
CGCACCCACTTCATTTCTTTCCTCTCTGTCCTGTAAAACGACATGACGCT
CAGCACTTCTTACGCTCAATCCTACTTTCGTCTTATCTCATCCCTCCAGG
CGCAGGTGTACATCTTTCCAAGTGTTACAGCCATAATCATTTTTATTGGC
AAATATCCGCGAGCCTTCGAACCATGGCAAAGAGCAAGACGAGCAGCAAC
AAGGAAGGCTTGGTAAAAAGCCAGAAGCCACATCACCGCCATCACCACCA
CCACCACCAGCAGCAGCAGCAGCAGCAGCAGGTAAGCGAGAAAATCAAAA
GGAAGGAACCTCTGCAGCCTTCCCCGGATGAAGAAGAGGAAAAGGAGGGA
GAGGAAGAGGAGGGGGAGAAGGAGACGTCTAGATCTGGTGAGGAGGAGGA
GAAGGAACAAGGGGAGGAGGAGGAGGAGGAGGAGGACAAGGAGAATGAAG
AAGACGATGAGGACGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAACT
GACGAGGACGACGACAATCTTGCGGACGACGAACAGGTCTCTTCCCTCCT
TCTCCCCTCCACCTCCACCAGCAAAGACAAATCTAAAACCGATCACCTCA
AAAAAGAGGCCCAGCGGTATCGTGACGAGATTGCTCGTCGTGGTGTCGTC
TATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAAAGTCAAGCACTT
ACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGGTGGAAGAAGACG
CAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAACAAAAAGAAGAAG
TACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCTAGCAAAGCAGAT
TGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGAAGCGGAATTTTT
ACCATGATGACATGTGGACGATGAAATATTTAAAGGGATTCAATTGGGGG
CATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAGGGAGCAAAAGTT
GAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGGCCTTCGTGGGCT
TGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGGCGGAGGAGGAGG
GAGGGGAAGGAAGGAAAGGAAGGGGAGAGGAAGAGGAAGGGGGATGAGAG
CGAGGAAGTAAGGGAGGAGTTTCGTGTGGTGCGACGGTTTCGGCAGGTGG
CCCCTCTGGGAGATGGGCCTGGCTCGGCGGTCGCAAGGGAGGGAGGAAGG
AAGGGAGGGAGGAAAGGTGGGGAGAGGGGGGAGGGGGGGATGGACAAAGA
ATTGCTTAAGGCGGTGTTTCAACAGCCGAGAACGTGA
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protein sequence of NO08G00800.1

>NO08G00800.1-protein ID=NO08G00800.1-protein|Name=NO08G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAKSKTSSNKEGLVKSQKPHHRHHHHHHQQQQQQQQVSEKIKRKEPLQPS
PDEEEEKEGEEEEGEKETSRSGEEEEKEQGEEEEEEEDKENEEDDEDEEE
EEEEEEEETDEDDDNLADDEQVSSLLLPSTSTSKDKSKTDHLKKEAQRYR
DEIARRGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEDAAMRKRRV
KGGGNKKKKYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTM
KYLKGFNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKREL
EGMEGRRRREGKEGKEGERKRKGDESEEVREEFRVVRRFRQVAPLGDGPG
SAVAREGGRKGGRKGGERGEGGMDKELLKAVFQQPRT*
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mRNA from alignment at chr8:263810..265546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00800.1 ID=NO08G00800.1|Name=NO08G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at chr8:263810..265546- (Nannochloropsis oceanica)
ATAAACTGCCACCATGCATTCTCCCCACCTGACTTGTTAATGGTCGACAA
TGACCCTTTTGAAATGTTGATAAGTAAAGATGCTCGACCAAGATAAATAT
CGATTTCACAGAATAATCAATCAACCCATCGGTCAATCGAAATCATTATG
TTTCACTGTCGCTTTGAGCAAGCCGTGGTCCGTGGTTTTTATTTCCATAC
AGGGGAGGTTTGAGAAGTGAAATGAAATAATTTTAAAAAACAAGGACAAC
AAAGTGAGCCTTATATGTACCAGAACGACTTCTCCCAAAGTACTTTCTAG
ATACTTTCGATCCCAACAAGACGTCTCCTATTACCATCAGGCACGTATAG
GTAGGGACGTATCTCGGCGGTGACATCCTCTGGCCGACGGTTGGCAGCGC
CGCACCCACTTCATTTCTTTCCTCTCTGTCCTGTAAAACGACATGACGCT
CAGCACTTCTTACGCTCAATCCTACTTTCGTCTTATCTCATCCCTCCAGG
CGCAGGTGTACATCTTTCCAAGTGTTACAGCCATAATCATTTTTATTGGC
AAATATCCGCGAGCCTTCGAACCATGGCAAAGAGCAAGACGAGCAGCAAC
AAGGAAGGCTTGGTAAAAAGCCAGAAGCCACATCACCGCCATCACCACCA
CCACCACCAGCAGCAGCAGCAGCAGCAGCAGGTAAGCGAGAAAATCAAAA
GGAAGGAACCTCTGCAGCCTTCCCCGGATGAAGAAGAGGAAAAGGAGGGA
GAGGAAGAGGAGGGGGAGAAGGAGACGTCTAGATCTGGTGAGGAGGAGGA
GAAGGAACAAGGGGAGGAGGAGGAGGAGGAGGAGGACAAGGAGAATGAAG
AAGACGATGAGGACGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAACT
GACGAGGACGACGACAATCTTGCGGACGACGAACAGGTCTCTTCCCTCCT
TCTCCCCTCCACCTCCACCAGCAAAGACAAATCTAAAACCGATCACCTCA
AAAAAGAGGCCCAGCGGTATCGTGACGAGATTGCTCGTCGTGGTGTCGTC
TATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAAAGTCAAGCACTT
ACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGGTGGAAGAAGACG
CAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAACAAAAAGAAGAAG
TACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCTAGCAAAGCAGAT
TGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGAAGCGGAATTTTT
ACCATGATGACATGTGGACGATGAAATATTTAAAGGGATTCAATTGGGGG
CATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAGGGAGCAAAAGTT
GAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGGCCTTCGTGGGCT
TGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGGCGGAGGAGGAGG
GAGGGGAAGGAAGGAAAGGAAGGGGAGAGGAAGAGGAAGGGGGATGAGAG
CGAGGAAGTAAGGGAGGAGTTTCGTGTGGTGCGACGGTTTCGGCAGGTGG
CCCCTCTGGGAGATGGGCCTGGCTCGGCGGTCGCAAGGGAGGGAGGAAGG
AAGGGAGGGAGGAAAGGTGGGGAGAGGGGGGAGGGGGGGATGGACAAAGA
ATTGCTTAAGGCGGTGTTTCAACAGCCGAGAACGTGA
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Coding sequence (CDS) from alignment at chr8:263810..265546-

>NO08G00800.1 ID=NO08G00800.1|Name=NO08G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr8:263810..265546- (Nannochloropsis oceanica)
ATGGCAAAGAGCAAGACGAGCAGCAACAAGGAAGGCTTGGTAAAAAGCCA
GAAGCCACATCACCGCCATCACCACCACCACCACCAGCAGCAGCAGCAGC
AGCAGCAGGTAAGCGAGAAAATCAAAAGGAAGGAACCTCTGCAGCCTTCC
CCGGATGAAGAAGAGGAAAAGGAGGGAGAGGAAGAGGAGGGGGAGAAGGA
GACGTCTAGATCTGGTGAGGAGGAGGAGAAGGAACAAGGGGAGGAGGAGG
AGGAGGAGGAGGACAAGGAGAATGAAGAAGACGATGAGGACGAGGAGGAG
GAGGAAGAGGAGGAAGAGGAGGAAACTGACGAGGACGACGACAATCTTGC
GGACGACGAACAGGTCTCTTCCCTCCTTCTCCCCTCCACCTCCACCAGCA
AAGACAAATCTAAAACCGATCACCTCAAAAAAGAGGCCCAGCGGTATCGT
GACGAGATTGCTCGTCGTGGTGTCGTCTATCTCTCCTCCCTTCCTCCCTT
CATGAAGCCAGCTAAAGTCAAGCACTTACTCGAGAAATTCGGGCCGATCA
CCCGGCTGTACATGGTGGAAGAAGACGCAGCGATGCGAAAACGAAGGGTC
AAAGGCGGGGGAAACAAAAAGAAGAAGTACGTGGAAGGGTGGGTGGAATT
CAAGGAGAAGGGGCTAGCAAAGCAGATTGCGGAACATCTGAACGGGTCGT
TGGTGGGAGGGAAGAAGCGGAATTTTTACCATGATGACATGTGGACGATG
AAATATTTAAAGGGATTCAATTGGGGGCATCTGACAGAGAAATTGGCCTA
TGAACGGCGGGTGAGGGAGCAAAAGTTGAGGGTGGAGATGATGCAGGCCA
AAAAGGAGAACGCGGCCTTCGTGGGCTTGGTGGAGAAGAAGAGGGAATTG
GAAGGGATGGAGGGGCGGAGGAGGAGGGAGGGGAAGGAAGGAAAGGAAGG
GGAGAGGAAGAGGAAGGGGGATGAGAGCGAGGAAGTAAGGGAGGAGTTTC
GTGTGGTGCGACGGTTTCGGCAGGTGGCCCCTCTGGGAGATGGGCCTGGC
TCGGCGGTCGCAAGGGAGGGAGGAAGGAAGGGAGGGAGGAAAGGTGGGGA
GAGGGGGGAGGGGGGGATGGACAAAGAATTGCTTAAGGCGGTGTTTCAAC
AGCCGAGAACGTGA
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Synonyms
Publications