NO08G00610, NO08G00610 (gene) Nannochloropsis oceanica

Overview
NameNO08G00610
Unique NameNO08G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2579
Alignment locationchr8:219287..221865 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:219287..221865 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036305RGS_sf
Vocabulary: Biological Process
TermDefinition
GO:0016310phosphorylation
GO:0006468protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005524ATP binding
GO:0004672protein kinase activity
Homology
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BLAST of NO08G00610 vs. NCBI_GenBank
Match: CBJ26581.1 (G protein-coupled receptor kinase G protein-coupled receptor kinase 2 [Ectocarpus siliculosus])

HSP 1 Score: 78.2 bits (191), Expect = 8.200e-11
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 0 
Query:    1 MEELQDVLEDVTYMNAMS--DDSPKPTKAWELPDESTLQSFLLSVSVADPTAFSLDKICQDSLGFYLFCKFCKQQGQGEGGREEGCISIPSTTSIKARFLEEVVRYRKSVGERGRAIKALSILCRYLLSPTDVAEQM 136
            MEELQD +EDV Y+ A++  D  P PT+AW  P E  L++F  +    +  +FSL++IC   LG YLF  FC + G+                  K  F+ +V+RYR+    + R   A  I+ ++LL  +   E+M
Sbjct:    1 MEELQDAIEDVQYLQAVNSKDSGPSPTEAWPFPSEKELEAFNTARLKENGQSFSLERICGGVLGLYLFGTFCTEMGERS----------------KFEFMLDVIRYRRLRTPQLRLRFAQGIIRKFLLDVSTSQEEM 121
The following BLAST results are available for this feature:
BLAST of NO08G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26581.18.200e-1134.31G protein-coupled receptor kinase G protein-couple... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009003NSK009003Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00610.1NO08G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00610.1NO08G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00610 ID=NO08G00610|Name=NO08G00610|organism=Nannochloropsis oceanica|type=gene|length=2579bp
TGTTGTAGTTGTTGTCGTTGCTTTTCGCGTCGAGAATAATCAGCACTCTG
TTGCCTTCTTGCCATGTCCCCTTCCTCGGAGCCTCCTCCGTTCCGTTCCC
GTCGTCCTCGCTTTGGTCGTGCGAAAGCGGCAGGTTATTTCCAAGAACCC
CGAGCGCCTTTTCCTTTGAAGCTTACGCATGGGCTTGGGCTTGAGTGATA
AGACGTAGGTTGGGAAGCCTGGTTTTGCCTTTTGACGACACCTTTTCTGA
TTGAGACTCCGAGTCGGACTCTCGGATAACGACTTGGTAGTGCTGCTGGG
CGAGCTTTCACACTCTCCAGGACACACACCCGTACAATTCTTCGCTTCCA
ACGCCCGACTCTCCACATACACATGCACAGTCATCCCGCGGGGGAGTGGG
GCTGTATTGTACCGCGGAGAAGGCAGCTCATCACAAAAAAGgtgagtgcg
aagctcggagggagggagtgaagtgcaatttttaatgccctggttctgaa
ggtaaggaggaaagtaaactctaccgaccacgccaaacttccctacttta
cgcgcgcatggcatgcgctagataacgagtgtgtatatgagcgagcggat
tgttactggaagctgtgaaatatcgaagtaatatggttgtccgatagcct
tttccttctaaaccacacgtgttattacaagaattgttctaataatacat
ctcgattcgccatgaccatccacacggacagGTGCACACATATTCGTATA
ATTTAAAGAGTAAGCACATCGAGAAAGAAAGATGGAAGAATTGCAGgtac
gtggacgcgtggggatagaaggatggacagaagacgggagggagaagcat
ggcccaaatgccctttctgcttgttacgatcattgaaagtagtcatatgg
ccgtgatccctatgatgttctctgcgtctattctttccttacattccagc
gtgtctcggtcctgtatcgagcctttttccagtgtcccccttgcagacgg
aatgccggaaggagggggggggaacgataaacccgtctcaccctccctcc
ctcttccactccttccctcttcctcccaccagGATGTGCTCGAGGACGTC
ACGTACATGAATGCCATGTCGGATGACTCCCCCAAGCCAACCAAGGCATG
GGAGCTACCCGACGAGTCCACCCTACAGTCGTTCCTCTTGTCCGTATCGG
TCGCGGATCCTACAGCTTTCTCCCTGGACAAGATATGCCAGGATTCCTTA
GGCTTCTACCTCTTCTGCAAATTCTGCAAGCAACAGGGCCAGGGTGAGGG
AGGGAGGGAAGAAGGGTGCATCTCCATACCCTCTACAACTTCGATCAAGG
CCCGCTTTTTGGAGGAGGTGGTGAGGTACCGTAAATCGGTGGGGGAGCGA
GGGAGGGCGATCAAGGCCCTGAGCATCCTTTGCCGTTACCTCCTCTCTCC
TACTGACGTTGCCGAACAGATGGGCGAGGGGCTAGTGGCATGCATGGAGG
AGGGAGAGGGAAGGGGAATGATGGAAAAGGTGGATTTAAATGAAGGGGAT
TTAAACCGAATTCCGAACATGAGTTTGAGTGGAGAAGATTTGCAGGCTTG
CTATGAGGAGGCATGGAAGGAGGGGGAGGACGCCCAGGCCTCCCTCCCTT
CCTCGACTCTTCCTTTACCGACGACGTGGCAGGTCGGGGGGGATGGCGGG
AAGGAGGGAGACTTCGTTGGCAGCAGCCCCACCAGCAGCAGCAGCAGCAG
GAGCAGCAGCGGCAGTGGCTGTGTTGGTGTGGGAAAAGGAGTTGGGCACG
TTCCACCCGAGGGAGGCCGGGAGGATGGGAAGGAGGGGGGAGGGATGGAT
GGCCGGGCGTCGCGTTTGTTGGTGAGCAATCCGCATTTGAATGCGTTGAG
GATTGGGGGAAGGACGGTGGACGAGGTCCGTGCTATCATTTTACGGGCTG
CTGGCCCGCTGCTGCGGGAGATGGTGGCGGCCGCAGCAAGAGTGCGGCAG
CAACAGCAGGAGCAAGAGCAGCAACTGCAGCAACAGCTGCAAGAGCAACA
GTTGTCGAAGGCTGTAGAAGGAGGAACAAGAATAGGAGGGGGAGGAGGAG
GGAAGACGGGAGGAGTGCTCCCATTGAGCCAGGGATCGATGATGAAGGGG
GAGAAAGGGGAGGAGGGAGAGATGATGCTGAATGTGAATGCTACGCATAA
TTTGATGCCGTCGGACGCAGTCTTGGTGGATTCTGTGCCCTCTGGCCCGT
CGGGCTCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCC
TCGTCATCGGGGGCCAGGAGGAATGGAAGGGAGGTGCCCGGCAGCGCAAG
CACCAAAGACACCTATGTCACGCAGCAGAAAGTTACATCAGTAGTAGCAA
CAACAGCAGCAGCAGCAGGGGGAGGAGGAGGAGGAGGACAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGAGGAGGAGGAGCAGG
GAGAGGAGGAGGGGGGAAGGAGGAGGGGGAAAGGTTAGAGAAGCAGTCGC
GGCAGCAGCAACAGCAGCAACAACAGTAG
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protein sequence of NO08G00610.1

>NO08G00610.1-protein ID=NO08G00610.1-protein|Name=NO08G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MEELQDVLEDVTYMNAMSDDSPKPTKAWELPDESTLQSFLLSVSVADPTA
FSLDKICQDSLGFYLFCKFCKQQGQGEGGREEGCISIPSTTSIKARFLEE
VVRYRKSVGERGRAIKALSILCRYLLSPTDVAEQMGEGLVACMEEGEGRG
MMEKVDLNEGDLNRIPNMSLSGEDLQACYEEAWKEGEDAQASLPSSTLPL
PTTWQVGGDGGKEGDFVGSSPTSSSSSRSSSGSGCVGVGKGVGHVPPEGG
REDGKEGGGMDGRASRLLVSNPHLNALRIGGRTVDEVRAIILRAAGPLLR
EMVAAAARVRQQQQEQEQQLQQQLQEQQLSKAVEGGTRIGGGGGGKTGGV
LPLSQGSMMKGEKGEEGEMMLNVNATHNLMPSDAVLVDSVPSGPSGSLSS
SSSSSSSSSSSSSSGARRNGREVPGSASTKDTYVTQQKVTSVVATTAAAA
GGGGGGGQGGGGGGGGGGRGGGGGGGAGRGGGGKEEGERLEKQSRQQQQQ
QQQ*
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Synonyms
Publications