NO08G00540, NO08G00540 (gene) Nannochloropsis oceanica

Overview
NameNO08G00540
Unique NameNO08G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5890
Alignment locationchr8:199498..205387 -

Link to JBrowse

Properties
Property NameValue
DescriptionMembrane transporter
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:199498..205387 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004776Auxin_eff
Homology
BLAST of NO08G00540 vs. NCBI_GenBank
Match: EWM26539.1 (membrane transporter [Nannochloropsis gaditana])

HSP 1 Score: 534.6 bits (1376), Expect = 3.000e-148
Identity = 318/462 (68.83%), Postives = 359/462 (77.71%), Query Frame = 0
Query:   12 LCLGAVAVLVAMAFVPETDAFLQPPLGPSPSTPFSLFPFA-KSSPSLSRRPDLRPLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            LC+  VAV+V+  +V +T AFL  P+   P  PF + P   + S   S           P   FP    RP + L A      L I+P AFKTS NAVLRLV+SC LGL AAS GLLDQ+SLSTLSRLIFAFFQPALLFTNVATTLATPSS+G+SL VLP FA+LQILFG LYGKG+A+ LRL+P SD GKELAVC AFANSGPLPLLFADAF RLHPTDPTLYPRAVAYISFYLVAWSPLFWT+G+TILG+  +QPAY+   XXXXXXXX          ++  HPL +K +SPPTLGCL GA+VG TP LR++FFGP APLA+LFDALRTMGSAYLPTVLLVLAGSLA+GF++L+LKD AL  RT AIC ARF LMP TA  LL +G A +LIPSSD LLAF+LLLQACMPCAQNTVVILQLQ+RPAAAASMATLVSL Y+ AV+PMG LLS VLQYVGL
Sbjct:   33 LCM--VAVIVSF-WVRDTGAFLLRPIPTHPLPPFHMTPACDRLSTHRSASLPCPSRAHCPAAAFPRFGPRPRTRLFA---FPSLVIQPTAFKTSVNAVLRLVASCGLGLGAASHGLLDQASLSTLSRLIFAFFQPALLFTNVATTLATPSSYGSSLLVLPAFAVLQILFGFLYGKGMAASLRLDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLGSTILGSSTSQPAYAKSPXXXXXXXXLP-------SRLLHHPLLRKTLSPPTLGCLLGALVGSTPFLRAIFFGPTAPLAALFDALRTMGSAYLPTVLLVLAGSLAQGFKSLNLKDPALLSRTGAICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQRPAAAASMATLVSLVYLAAVVPMGLLLSFVLQYVGL 481          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: EWM26540.1 (membrane transporter [Nannochloropsis gaditana])

HSP 1 Score: 529.6 bits (1363), Expect = 9.700e-147
Identity = 310/443 (69.98%), Postives = 346/443 (78.10%), Query Frame = 0
Query:   31 AFLQPPLGPSPSTPFSLFPFA-KSSPSLSRRPDLRPLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            AFL  P+   P  PF + P   + S   S           P   FP    RP + L A      L I+P AFKTS NAVLRLV+SC LGL AAS GLLDQ+SLSTLSRLIFAFFQPALLFTNVATTLATPSS+G+SL VLP FA+LQILFG LYGKG+A+ LRL+P SD GKELAVC AFANSGPLPLLFADAF RLHPTDPTLYPRAVAYISFYLVAWSPLFWT+G+TILG+  +QPAY+   XXXXXXXX          ++  HPL +K +SPPTLGCL GA+VG TP LR++FFGP APLA+LFDALRTMGSAYLPTVLLVLAGSLA+GF++L+LKD AL  RT AIC ARF LMP TA  LL +G A +LIPSSD LLAF+LLLQACMPCAQNTVVILQLQ+RPAAAASMATLVSL Y+ AV+PMG LLS VLQYVGL
Sbjct:   22 AFLLRPIPTHPLPPFHMTPACDRLSTHRSASLPCPSRAHCPAAAFPRFGPRPRTRLFA---FPSLVIQPTAFKTSVNAVLRLVASCGLGLGAASHGLLDQASLSTLSRLIFAFFQPALLFTNVATTLATPSSYGSSLLVLPAFAVLQILFGFLYGKGMAASLRLDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLGSTILGSSTSQPAYAKSPXXXXXXXXLP-------SRLLHHPLLRKTLSPPTLGCLLGALVGSTPFLRAIFFGPTAPLAALFDALRTMGSAYLPTVLLVLAGSLAQGFKSLNLKDPALLSRTGAICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQRPAAAASMATLVSLVYLAAVVPMGLLLSFVLQYVGL 454          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: CEL97139.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 231.9 bits (590), Expect = 4.200e-57
Identity = 154/412 (37.38%), Postives = 229/412 (55.58%), Query Frame = 0
Query:   91 LSHLRIEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSL----------------------------XXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLA--KGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            LS+L I+  A + S+ AVL L++   +G+ AA +  LDQ++ S LS+L+   FQPA L T++A TLA+P++    L  LP F   QI+ GS  G+ L   LR+ P S  G+ L + C+F+N+GPLP+LF +A  R HP DP++  +  +YI+FYL   +P+ W+ G +IL  + T+P    +                            XXXXXX          T+++++ HP   + +SP  + CL G ++G +P+LR +   P APL  ++ AL+ +G  + P   LVLAGS     G E+ ++     F+R   +  ARFV  P  A  LL +G    LI  +D  L F+LL+Q CMP AQ +VVILQL+ +P AA  MA  ++L Y L VIP+  L+S V  Y G+
Sbjct:   84 LSNLHIQRGALEASSKAVLELLA--LIGIGAAKRDDLDQAARSVLSKLVRNVFQPAFLCTSIAATLASPAARVRDLLPLPFFCASQIILGSFVGEALLRILRISPKSQSGRRLKMLCSFSNAGPLPILFTNALFRDHP-DPSVMAKVNSYIAFYLTVQAPMMWSYGYSILAGMPTRPVKHHVDEDDPQWADAFADWGMSPSLEQVPPXXXXXXXXXPRSLFLQVRRTVKQLWLHPFRPRLLSPAVISCLAGIVIGTSPLLRQMLVAPGAPLTFIWGALQILGQGFRPAAALVLAGSFVTPSGGESDTVISLRNFRRVLPVAFARFVCAPTIAFTLLTIGRRLGLI-MNDPFLWFVLLMQGCMPAAQQSVVILQLENQPQAATVMAKTLTLLYSLGVIPVALLISLVRGYTGV 491          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: CBJ28108.1 (AEC family transporter: auxin efflux [Ectocarpus siliculosus])

HSP 1 Score: 198.7 bits (504), Expect = 3.900e-47
Identity = 138/395 (34.94%), Postives = 207/395 (52.41%), Query Frame = 0
Query:   96 IEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATIL----------GAVKTQPA---YSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLA-----KGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            I P   K S  AV  L+  C LG+ AA +G+L   +++ LS++++  F P+LL  NVA T  + S   ASL  +P FA +QI  G          LR+ P ++ G+E  +C AF NSG LPL+F +A  R     P L  R VAY SFYL+ WSP FWTIG  IL          G  K   A    +++               S ++ +   P  ++ +SPP + C+ G ++G++P LR L     APL  ++ A   + +AY P+ +LVLAGSLA     K F     +DT   K   A+ +AR+ L+PL    LL  G    L+P  D +L F+LL+++CMP AQN+V++LQ+      A   A  +   Y+++++P+  LL+  +  + L
Sbjct:  130 INPVVVKASARAVSELLCCCVLGVVAAKKGILTPVNVAALSKIVYGIFLPSLLMVNVAKTCVSQSV--ASLLPIPAFAGIQIALGLAISGVAMRLLRINPDTEAGREAKMCMAFQNSGILPLIFLNAMFR---GSPELLSRGVAYASFYLMGWSPTFWTIGNNILTGHVHQDKGGGGKKNSAAEGDVAAVPKAKLSLFKRVANLPSKVKSIAESPAVRRVLSPPIVACMTGLVIGLSPPLRWLLMREGAPLGPMWSAFSNLTAAYTPSGVLVLAGSLANCPPGKWFS----RDTK--KTILAVGMARWFLLPLVTSGLLFGGVKYGLVP-PDPMLLFVLLIESCMPSAQNSVIMLQVAGLQDEAGRNARTLCTLYLISIVPVSILLTVFISALKL 512          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: EWM23919.1 (auxin efflux carrier-like protein [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 4.300e-46
Identity = 137/388 (35.31%), Postives = 208/388 (53.61%), Query Frame = 0
Query:   96 IEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHP--LCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLS---------LKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            ++P   K S  AV  L+ +C +G +   +G+L + +++ LS +++    P+LL  NVA T+ T      +L  LP+F  +QIL  S     +   +  +  S +G++L V   F N G  P+LFA   LR HP DP++ P A++YISFYL+ W+P+FWT G ++L   +   A S                   I+    HP    ++ +SPP +G L G  VGV+P L  LF GP APL  L +A++T+GSAY    LLVLAGSLA    T S          K    + + A++C+ RF L P   L+++    +   +   D+L+ F+L LQ+CMP AQN+V+++QL  R A A  +A ++   Y L+ IP+  LL+  LQ   L
Sbjct:   93 LDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLR--TLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHP-DPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAPTAQS------IAEKESVVTLADRIKYFIRHPPATIKRILSPPIVGSLGGLCVGVSP-LAKLFLGPRAPLGILTNAVQTIGSAYTSMGLLVLAGSLALPLPTPSPLEEVSGAESKSIHPYLQIASVCLVRFCLCPALCLSIILRAMSTGWV-KLDRLMVFVLFLQSCMPSAQNSVLMVQLSGRQADATRLARMLLYIYSLSCIPISILLTLFLQNFSL 469          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: EWM23920.1 (auxin efflux carrier-like protein [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 4.300e-46
Identity = 137/388 (35.31%), Postives = 208/388 (53.61%), Query Frame = 0
Query:   96 IEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHP--LCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLS---------LKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            ++P   K S  AV  L+ +C +G +   +G+L + +++ LS +++    P+LL  NVA T+ T      +L  LP+F  +QIL  S     +   +  +  S +G++L V   F N G  P+LFA   LR HP DP++ P A++YISFYL+ W+P+FWT G ++L   +   A S                   I+    HP    ++ +SPP +G L G  VGV+P L  LF GP APL  L +A++T+GSAY    LLVLAGSLA    T S          K    + + A++C+ RF L P   L+++    +   +   D+L+ F+L LQ+CMP AQN+V+++QL  R A A  +A ++   Y L+ IP+  LL+  LQ   L
Sbjct:  107 LDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYTTPLR--TLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHP-DPSVLPLAISYISFYLLGWTPIFWTYGYSLLVPAEAPTAQS------IAEKESVVTLADRIKYFIRHPPATIKRILSPPIVGSLGGLCVGVSP-LAKLFLGPRAPLGILTNAVQTIGSAYTSMGLLVLAGSLALPLPTPSPLEEVSGAESKSIHPYLQIASVCLVRFCLCPALCLSIILRAMSTGWV-KLDRLMVFVLFLQSCMPSAQNSVLMVQLSGRQADATRLARMLLYIYSLSCIPISILLTLFLQNFSL 483          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: GAX22255.1 (uncharacterized protein FisN_19Lh325 [Fistulifera solaris])

HSP 1 Score: 183.0 bits (463), Expect = 2.200e-42
Identity = 151/433 (34.87%), Postives = 225/433 (51.96%), Query Frame = 0
Query:   54 SPSLSRRPDLR---PLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPS-SHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAV--KTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTALFKRTA-----AICVARFVLMPLTALALLRVGTAAALI---PSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            +P+L RR + R    +H     P   +  RP   LNA        + P   K S +A  +L+S+  +G   A + +LD++++  LS+L +  FQP  LF +VA TL + S +   SL ++P+  ++QI  G+      + F R + T    + + +C  FAN+GPLPL+F+ A L   P    L   A A +SFYL+AWSPLFWT G  IL     KT+   S+                S +++V +    ++ +SPP +G L G ++G  P L +LFFG    L  +  A +T+G+AYLP V+LVLAGSL    + L       FK+ +      +   RF++MPL A  + R+   A L+    +   +  FILLLQ C P AQN VV+LQL   P  A  MA L++  Y+ +V+PM  LLS  L   G+
Sbjct:   20 TPTLHRRIERRSRGTIHGKKFSPARVVNARPTVTLNA-------SLNPVVVKASLSATAQLLSALGIGGMLAKRNILDKNAVKALSKLTYHVFQPTFLFVSVARTLRSVSNAQKPSLWIMPIAGVVQIAIGASLALVTSRFFRDDTTR---RHVQMCTTFANAGPLPLIFSAALLEGSP----LAGMAAAAVSFYLLAWSPLFWTFGKIILSGTSSKTENGASN----------------SPLQRVVTG--IKQFLSPPVIGSLIGMLLGSVPRLGNLFFG--GFLQPVTGACQTLGTAYLPAVMLVLAGSLVLPQDDLENSTAISFKKASPWPFVTLFATRFIVMPLLAYTMCRLLIGAGLLGGHSARSAIFHFILLLQGCTPPAQNAVVLLQLAGLP--AQGMAKLLTGLYVASVVPMTLLLSWCLSTSGV 416          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: GAX19737.1 (uncharacterized protein FisN_19Hh325 [Fistulifera solaris])

HSP 1 Score: 177.2 bits (448), Expect = 1.200e-40
Identity = 152/440 (34.55%), Postives = 229/440 (52.05%), Query Frame = 0
Query:   48 FPFAK--SSPSLSRRPDLR---PLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPS-SHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILGAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTALFKRTAA------ICVARFVLMPLTALALLRVGTAAALI---PSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            F FAK  ++P+L RR + R    L+         +  RP   L+A        + P   K S +A  +L+S+  +G   A + +LD++++  LS+L +  FQP  LF +VA TL + S +   SL ++P+  ++QI  G+      + F R + T    + + +C  FAN+GPLPL+F+ A L   P    L   A A +SFYL+AWSPLFWT G  IL    +     +                S ++KV S    ++ +SPP +G L G ++G  P L +LFFG    L  +  A +T+G+AYLP V+LVLAGSL    +  S + TA+  + ++      +   RF++MPL A  + R+   A L+    +   +  FILLLQ C P AQN VV+LQL   P  A  MA L++  Y+ +V+PM  LLS  L   G+
Sbjct:   12 FCFAKAFTAPTLHRRIEKRSRGTLYDKKFISARVVNARPALTLSAA-------LNPVVVKASLSATAQLLSALGIGGMLAKRNILDKNAVKALSKLTYHIFQPTFLFVSVARTLRSVSDAQKPSLWIMPIAGIVQIAIGATLAMVTSRFFRDDTTR---RHVQMCTTFANAGPLPLIFSAALLEGSP----LAGMAAAAVSFYLLAWSPLFWTFGKIILSGPSSNTVNGA--------------SDSPLQKVVSG--LKQFLSPPVIGSLIGMLLGSVPRLGNLFFG--GVLQPVTGACQTLGTAYLPAVMLVLAGSLVLPQDD-SEQSTAISSKKSSPWPFVTLFATRFMVMPLLAHTMCRLLIGAGLLGEHSARSAIFHFILLLQGCTPPAQNAVVLLQLAGLP--AQGMAKLLTGLYVASVVPMTLLLSWCLSTSGV 416          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: CEL93843.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 166.8 bits (421), Expect = 1.600e-37
Identity = 130/380 (34.21%), Postives = 182/380 (47.89%), Query Frame = 0
Query:   98 PAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATILG----AVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFF-GPAAPLASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQYVGL 473
            P  FK S  AVL L+    +G  A   G+LDQ+ +  LS L+++  QPA LF +VA T++T     + LA LPVFA+LQIL G                                                       R  A+I+FYL+ WSP  W++G  IL      V  +P++S +                              + PP LGCL GA+ G  P  RS FF  P+  +  L DA+R +GS YLP VLL LAGSL +GF     +  A   +  A+ +ARF +MP    A++R+    +LI  +D +L F+LLL+ CMP AQNTVVILQ Q +   A SMA  ++  Y L+++P+ FL+S +L   G+
Sbjct:   30 PVIFKASLGAVLNLLYVGVIGAIAGHLGVLDQAKIRCLSELVYSIAQPAFLFVSVAETISTTPGGLSLLAPLPVFAVLQILIGK------------------------------------------------------RCEAFIAFYLLGWSPFLWSLGYNILADDRDKVNNKPSWSGVLREAR----------------------DSLVRPPVLGCLAGALAGGLPWTRSFFFANPSCVVRPLVDAVRNVGSLYLPAVLLTLAGSLYRGFAQGGFRVNAF--QLPAVALARFGVMPAITFAVVRLAQRTSLI-QADPVLMFLLLLEGCMPPAQNTVVILQKQGQREEAESMAQTLAAIYALSLVPLPFLISCILDTAGV 330          
BLAST of NO08G00540 vs. NCBI_GenBank
Match: XP_005761646.1 (hypothetical protein EMIHUDRAFT_452869 [Emiliania huxleyi CCMP1516] >EOD09217.1 hypothetical protein EMIHUDRAFT_452869 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 156.4 bits (394), Expect = 2.200e-34
Identity = 140/404 (34.65%), Postives = 203/404 (50.25%), Query Frame = 0
Query:   96 IEPAAFKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFTNVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEGKELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSPLFWTIGATIL---------------------GAVKTQPAYSSLXXXXXXXXXXXXXXXSTIRKVFSHPLCQKAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPL-------ASLFDALRTMGSAYLPTVLLVLAGSLAKGFETLSLKDTAL---FKRTAAICVARFVLMPLTALALLRVGTAAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSLTYILAVIPMGFLLSAVLQ 469
            + P   + + +++  L++SC++G  A   G L  S + +L+ ++F  F PA+L T+VA+T+A   + GA+LAV+P+ A  Q+  G+       + LRL   S  G+ ++V  +F N+G LPLLF  +  R    + T   RA + ++ +L+ WSPLFWT+G  +L                                 XXXXXXXXXXXXXXX            ++A+SPP   CL G +VG                         LF  L  +G AY P  LLVLAGSLA   E     +  L        AI VARF  +PL + ALL     A L+P +D L   +LLLQ+CMP AQN+V+ LQ+   P  AA MA ++   Y++A +P+  +LS +LQ
Sbjct:   61 VNPVILRLTRDSMAELLTSCAIGYGATKAGYLSGSQIRSLAGVVFNVFLPAMLLTSVASTVAEQQA-GAALAVMPIAAWAQVAVGASVASVSLALLRLPRRSSAGRGVSVLSSFGNAGVLPLLFVSSLFRGAAQEAT-RRRATSLVAMFLLGWSPLFWTLGYALLTGHAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRRALSPPIAACLAGLVVGXXXXXXXXXXXXXXXXXXXXXSWLPLFRCLEALGKAYSPAALLVLAGSLAAPTEQRRAGEGELGASASHVVAIAVARFCAVPLLSFALLHAALRAGLLP-ADPLRDLVLLLQSCMPSAQNSVLALQVDGSPERAARMARVLLAIYLIAALPVAGILSLLLQ 461          
The following BLAST results are available for this feature:
BLAST of NO08G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26539.13.000e-14868.83membrane transporter [Nannochloropsis gaditana][more]
EWM26540.19.700e-14769.98membrane transporter [Nannochloropsis gaditana][more]
CEL97139.14.200e-5737.38unnamed protein product [Vitrella brassicaformis C... [more]
CBJ28108.13.900e-4734.94AEC family transporter: auxin efflux [Ectocarpus s... [more]
EWM23919.14.300e-4635.31auxin efflux carrier-like protein [Nannochloropsis... [more]
EWM23920.14.300e-4635.31auxin efflux carrier-like protein [Nannochloropsis... [more]
GAX22255.12.200e-4234.87uncharacterized protein FisN_19Lh325 [Fistulifera ... [more]
GAX19737.11.200e-4034.55uncharacterized protein FisN_19Hh325 [Fistulifera ... [more]
CEL93843.11.600e-3734.21unnamed protein product [Vitrella brassicaformis C... [more]
XP_005761646.12.200e-3434.65hypothetical protein EMIHUDRAFT_452869 [Emiliania ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009013NSK009013Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00540.1NO08G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539185gene_3381Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101407g1gene3988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00540.1NO08G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00540 ID=NO08G00540|Name=NO08G00540|organism=Nannochloropsis oceanica|type=gene|length=5890bp
CAACTGTGTGTTTTCTCTCTCTTCCACGCGTCCTTTCCCAGCGAGCGAGG
TATACTGAGGCATCCACTTCATTAATTCTTCTCTCGCATGTGTAAATTCC
AAGGATAAACAGCATCGTAGTCTCAGTCTTTACCCTCCCTCCTTCCCTCC
CGCATTTCCTCCCGCCCTCCCTCCCTCCTTCCCTCCTTCCGTCATTCCCT
CACTCAGTCCTTGCCTCCGAACAGACCTTCCAGAACACTCAAGGAAGGAA
GGGAGGGAGGGGAGGAGGGGAGGGAAGGAAGGAGGGGAACGAAACAAGGC
AAATCCGGGTATTTTCACATCCACTCCATCTTCACCACCAAGGGGAGATG
GTCGCTAGGACATGCGCGACACGGCAGGCCCACCTGACTCCTCAACTCAC
CCACTGTGGGCATGCCCCAAAACTCCACACACCTCAACCTACTCCCTCCT
TGGGTCCCTCCCTCCGTCCCGCCTTCCTTTCCATTGTACCAGATGTAATC
CACCGCTCCCTTAAATTTTCCATGGTAGCTGGTGAAGGCGGGCTCGCCCG
TGGTGTGCGCGGAGGGCCGATGAGCATAGGCGCTGACGAGAGAGAGGGAG
TGATGTAGGGGGGGGTGGGAGGGGAGGCTCCAGTCGCCGTGCGGGGGCCA
GATCGGCGGTGGGTGGGAAAGTGAAGGAGCAGAGGGACTGCTGCTACTGC
TGCTGCTGTTGTTGTTGTTATTGTTGCTGCTGGTGGTGGAGGTGCTGTTG
CTGCTGCTGCTGCTGTTACTGATGGTTGTGGTGATGGGTACTACTCCCTC
CACCATCACCTCCTTCTCCACCTCCTCCTCTTCCTCCTCTACCACCATGG
CGTTCGCATCCTCCGGCTGCTGCTTCTTCCCTCCCTCCCTCCTGCGCTCC
CTCCACCCCTCCCTCCCCGCATGAGGCCTAAAGACACCCATCGCCGTCCC
CGCCCCAAAATGTCTCATCCTTCTCTCCTCCCTCCTTCCGTCCCTCCCTC
CCCCTCTTCCTCCTCCCCAAGCCACCTCCTCAAATGGCATCACCCCCTCC
TCCCTCCCTCTCCCTCCTTCCCTCTTTCCTCCCACCCATCGCCTATTTAG
TTGGTCAACGTCCAGCCTCCCCGTGGCCATCCACGCGTACAAGGCGCTGA
CAGGTGTGGCATTAAAATCACCACATATCACTGAGGGATGGAGGGAGGGA
GGGAGAACTGGTGAAAAGGGTCAGGAAGGAGGGGGGGAGGGGAGGGGGAT
GATAGTGTACTTCACTCCTCGGCGGCAACACTCAGACTGACTTACCTATC
CCTGCCTCCGGGTATCGCTGCTGCAACCGCTCCATCCTCCCTAGCAGCAT
CTGCAGCTGGGCCAACTTGACATCTCCTCTCCTGGGGTTGAACAATAGGT
GGGTGTTTGCCACGATCAACGTCCTCCCTCTCCCCCGCCCTGTCCCCTCT
TCCTCCTCCCCCCTCCTTTCCTTTCCTTCCCTCCTTTGCCTCCTTCCCTC
TCTTGCAACACCACCAGCAGTGCGACGTTATCTCTATCTAAGTGCCCACA
CCCCGGGACACGGTACTCCACCTCCTCACTTTCCACAAATTCAAATTTTT
GAATCTGCCAATAAACGGATACCCCGTCGATTTTATCCGCCCCGGTGCGT
TTTTTCCAAAGCCCCGTGTAGGTAGGAAAGGAAGGGAGGGAGGCGGAGGT
GGTCGAAGAGAGTTTATTTTCTTCTTTTCCATCACCGGGAGTGGCCGCTG
CAGCAGTAGCAGCAGTAGCAGCAACAGCAGCACCAGCACCAGCACCAGCA
CCAGCACCAGCACCAGCGCCACCACCCAAGGCCTGGAGGAAGTGCTCGTG
GTCATCATCCTCCTGTAAACAAATCACCTCGGCTCCCATCTCTCTCAACA
CGGCCTGAATACGGGGTCCTCTGACGCACCACGCCAGCTCCTCGTCCGTG
GCGAACCCCAAGAAAGACCGATCCACTAGACTGGAGGCCAGCACATTCCA
CGAAAGCAGAGTAAAGCCCGAGCTCGAAGAAGGGGGCAAGGGATGAGAGG
AAGAAGGGGAAGGGCGGGTGCTGGGCCTGATCCAGGGGCGGTGGAACGAG
GGAAGGCCGTTCCGGGGAGGGTACGCAGGGTGATGGCTGCCGCTGCTGCT
GCTGCTTCTTCCGCTGGGTGTGTGTAGCGATGAAACTCCTCCTCCACCAC
CTGGACCTCCTTCCCACCATCCTCTTCCTTTTCCTCTCCTACTGACGACT
GCATCCCTTGTTCCAGCTCGGAGGTGGGCGGAATAGTGCTGGGCAAAACG
GTAGTATGCGTGCAAGTCCTTAGACTGCTGCTGCTGATGCTGTTGGTGGT
GATGGTGTTGGTGTTCGCGCACTTGTGTGTGATGCGTCTGCCACTGGTGA
TGTTGCGGATTGGAGAAATGATATTGCCCTGCTTCTATATGTGGTCGTTC
ACGGCCGCCGCCGCCTAGACAGGCGAAGCCTCCTCCCCTTCCCCGCCCCT
GCTCCCCTGCTCCTCCTCGTCCTCCTCTTCCTCCTCCTGATCCTATGCAG
CCGCGCCTGCCATGTCCATTGGGCTGAGACTTATCGGAAGATTCTTGTCC
GTGCTCTGGGCCTCGGAATTTCTTGCGCTGGTGCTGCTGGCACTGATGCT
GGCGATGAGAAGGAGGAGGATGGGGAGGTTGCGAGGCTTCTCCTGCCACA
TGCATGTCCTCCATGATGTAGTGGTCGAGTCGGAAAAGTTGAGTAGATTG
CTGTGGTGTAGCGATATTGCTACTGGCGGTACAGGTGCTGGTGCTGTAGA
CGATGTTGATATTGGTGTTGCTACTGCTACTGCTACTTGTAGGGGCCCAA
GACGTAGAGGGGGGAGGTCGACGGGTGTTGCGTATGAATGCAAGGACTGA
AAGGAGCCGCTGCCCTCCGCCCCCGTGGAACATTCACGAAGTACTGCCTG
CGTAGGAAAGAAGTCTTGACTGGGAGGCTCTGGTTGTGTCTGTTCGGTGG
GGCGTGCGGTCAAGAATGGATATCACAGCGATGACGGAGGATGGTTATTG
TGCCATGGACTCCATTGGAGGGCTGATACAGCTTGCATTCGTTGACGTGT
CCTTTTCCCCCTTCTTTCCAAGACTCTCGTCCATATCCTTGAATGTTGTC
GGCACAGAGGGGTGGGTTGTCACAGCTTGCTTTCTCAAAACGAGGCGCGC
AGATGCAGGGTAGGGACTCCCAACACCCATCGCCCATTCGCCCAAGTCAA
CGCCTTCAGGCCAACGGCAGCAACGCATAAGAGAAGCCCTCTGCCCGTCG
GATCCCCCTCTCTTTGTAAATAAGATAGCAATGCGGATGAATTCTTGAAT
GCTGCCACCAGTCCAGCCACGTGCACTATATAATAGATTTTTCTTACGCT
TTCTCGCGCCCCCGACACGCTACCACGCAGCACACAAGACAAGCAATGAG
GACGCCCACCATGAGCATGACCATGGAGCTGTGCCTGGGCGCGGTCGCGG
TGCTGGTGGCGATGGCATTCGTGCCGGAGACAGgtacattcttggaggac
agaggggcggagggagggatgtggtgggcgaggatgaaaagaaacgggct
gccaggccgccatcacaatgtccctcatttcgatggaacgtctgctttac
ccatcatcctgctgatgccactgtgtagaagcggctatgatcttatctga
cctgcatcattttaccttctcccgcccatttctcctctaactcaaccccc
gaaaagACGCCTTCCTCCAACCCCCTTTGGGGCCATCACCATCAACACCC
TTCTCCCTCTTCCCCTTCGCAAAATCTTCCCCATCACTATCACGGCGGCC
AGATCTGCGTCCGCTTCATCAACCTCCCGGCCATCCTTTCCCTACCCTTC
AAACCCGTCCTTTCTCGCACCTCAATGCTGTCTCCTTTCTATCTCACCTC
CGCATCGAACCGGCCGCGTTCAAAACCTCTACCAATGCCGTCCTCCGCCT
CGTCTCCTCCTGCTCCCTCGGTCTTTTTGCCGCCTCTCAAGGTCTGCTGG
ACCAGTCCTCCCTTTCCACCCTCTCCCGCCTCATCTTCGCCTTCTTCCAA
CCCGCCCTCCTCTTCACGAATGTCGCCACCACCCTGGCCACCCCCTCCTC
CCACGGCGCATCCCTCGCAGTGCTCCCGGTCTTCGCCCTCCTCCAAATCC
TTTTCGGCTCCCTCTACGGGAAGGGCCTCGCCTCCTTCCTCCGCCTTGAA
CCCACCTCTGACGAAGGCAAGGAGCTCGCGGTGTGTTGTGCCTTTGCCAA
TTCCGGACCCCTCCCCCTCCTCTTCGCCGACGCTTTTCTCCGCCTCCACC
CCACCGACCCTACCCTCTACCCACGGGCCGTGGCTTATATCTCCTTCTAT
CTCGTGGCCTGGTCCCCCCTCTTCTGGACCATCGGTGCCACCATCCTAGG
CGCTGTCAAAACTCAACCCGCCTATTCCTCTCTTCCATCCTCTTCCTCCC
TCCCGCCCTCGCCCCCGCCCACCCCCTCTTCAACCATCCGGAAGGTATTC
TCTCATCCACTCTGTCAAAAAGCAATTTCTCCCCCAACTCTCGGGTGCTT
ATTTGGCGCCATCGTTGGCGTCACCCCTGTTCTCCGCTCCCTCTTCTTCG
GTCCTGCTGCCCCTCTTGCTTCTCTCTTTGATGCTTTACGTACCATGGGC
TCGGCCTACCTCCCTACCGTCCTCCTCGTCCTTGCTGGGTCTCTGGCAAA
Ggtgagccagcttttcctcctttcctccctccctccctcgttccctcgac
atccttcctcccttcattctttcttcccgcctttccctctcttttgtatc
aattcgtgggacccatgtaaacacactgaaactcaccctccctccttccc
tccttcccgccctggtagGGCTTCGAAACTCTGAGCCTGAAAGACACGGC
CCTCTTCAAGCGCACGGCCGCCATCTGCGTCGCCCGCTTCGTTCTGATGC
CCCTCACCGCCCTGGCCTTGCTGAGGGTAGGGACGGCAGCCGCGCTCATC
CCCTCATCCGACAAGCTCTTGGCCTTCATCCTCCTCCTCCAAGCGTGCAT
GCCCTGTGCCCAAAACACCGTCGTGATCTTACAACTTCAAAAGCGACCGG
CAGCGGCTGCTTCGATGGCCACCCTCGTCTCGCTCACTTACATCCTCGCC
GTCATTCCCATGGGGTTCCTGCTCTCGGCCGTGCTGCAGTATGTTGGACT
GTAAGCAAGCCCTCCTTCCCTCCTTCCCTACCTCCCTCCCTTTTCTTCGT
TTCGCAATAAGGTCCGTGGGCGAGTTTTGGCCTTTATGGCGGCCTTGAAG
AGGACAAAAGAGAGAAGGAAAAAGGAAGGGAGGAAGGGGTTTGTAAATAC
GAAGTAATATCTTATAAATACACAGGAAAATAACAATCTGTATAAGTCGA
GAGTCCTGGTGAAAAGAGACAGAATAACGGCATATGATCAGAACCCAAGG
CAATCGTTTCCACCTTTAGAGGAGTAAGTGGATGGATTGGATGGATGAAT
GACGGTCAAAAAACAAGAGGAAAATATCGCCCGGAGGAAAAGTTCAAAAT
TTTGATTCATGTCTGTTGGCATAGGTGTATGTGGGGGTGGGGTTAGGGAT
GCAGGGAGCGACCGTTGAAAGTCAGCAGGTCTTGAGCAAGTGAAGGCTCG
CCTTGAAACTGCCGTCACCACCACGTATTAATGTTAATAACACTGATTGC
CACGTGCCATATAGGACAGGGAGGGATAAAAGGAAGCCAAAGGGTAAGAA
AGGAAGGACATCCAAAAAGAGGGAGACCCATGAGCTCTTTGCTAACTGCT
ATACCTCTTTACATTAAACTTTTTTTGTACATGCATAAAT
back to top

protein sequence of NO08G00540.1

>NO08G00540.1-protein ID=NO08G00540.1-protein|Name=NO08G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MRTPTMSMTMELCLGAVAVLVAMAFVPETDAFLQPPLGPSPSTPFSLFPF
AKSSPSLSRRPDLRPLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAA
FKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFT
NVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEG
KELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSP
LFWTIGATILGAVKTQPAYSSLPSSSSLPPSPPPTPSSTIRKVFSHPLCQ
KAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPT
VLLVLAGSLAKGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGT
AAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSL
TYILAVIPMGFLLSAVLQYVGL*
back to top
Synonyms
Publications