NO08G00530, NO08G00530 (gene) Nannochloropsis oceanica

Overview
NameNO08G00530
Unique NameNO08G00530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3358
Alignment locationchr8:196091..199448 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:196091..199448 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009015NSK009015Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00530.1NO08G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628822gene_3380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00530.1NO08G00530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00530 ID=NO08G00530|Name=NO08G00530|organism=Nannochloropsis oceanica|type=gene|length=3358bp
CAGCCTACAGATCCCTGGCCATGGCTTCGCCACCACTGAGCCAGCAGCAG
CAGTGGCATTTGTTTGCCAAACGCAACTCCCCACCTCCCGCACCGCCCTC
ATCCGCCCAACAGCCTCCTCATCAACACTGGTCCTTTCCCCGTACGCGCC
GTGATGATTCCGACAGCGAGCCCAACGAAGCCCCACCCCGAGCACCCATC
CTACTCGAAGGTTACCTGAAAAAAAAGGGGGCGAGGGTACACATGTGGAG
CTCCCGCTACGCGATGCTGCGTGGCAATAAGCTCATTCTGGTTCGAGGGA
AGAAGGAGGAGATGGAAGCGGCGGCAGCGGCAGCTGCGGCTTTCGCTGCT
ACTGCTAGCGCTAGTTTTCGGGCAGAACACAACCTCCACCCCGGCCCACC
TACACGTGAGTTTATCTTAATGTCAGGTTCATACGTGAGTGACGTGCGCG
AGCTGCCAAACGCGGCGGGGAAAGGGAAGAGTCTTTGGATGTTTCGGTTG
CACTGGCCTGAGGGTGTGAAGGGCTATGGATTAGGAGCAAGAGCGCTAAG
CAAGGGGGTGTTGCCCTCTCCTGTGAATCGAAGAGCAAAATCAGATGGAG
AAGACCAGGAGGAGGAAGAGGATGATTATGACGAGTACATTGACGCAAGC
TATCGTGGCGGTGCTGGCCGTGTCCCCTCTCGCCCTATCACTCCCTCTGT
TGCTGGCACCAGCACCACAGCAGCAGCAGCAGCAGCAGAAGAGGGAGGAG
GAGGAAGAGGAGAAGAAAAAAAAGGAGCCACGCTGCAGGAACTAGCGGTA
CAAGCAGCGCACACAGCAAAGCAGCAAAGAACCCGGGCGGCGGACATTGA
GCGTGCTGAATCTCACCACCAGTCCTTGGTGACCAAAGGCGCAGGGTTCG
CTGGAGTCGTCGTCGGTGGCGTCGTCATTGGTGCTCTTACGGCAGGTGTC
GGCCTCCTGCCCTACCTTGGGTTAGTGGGCGCGGCGGCTGTGGCAGGGGG
AGGCGCGGTGGCGTACACGGCAGCACAGGCACCCTCGGAGTCGAGGGTGG
TGTTGGCCGCCGAAACGGAGGCAGAGGCACGTCGGTGGAAGGGGGCTTTG
GAATTACAAATTGCCGTATGTGAGGGAAGACGGCCACCACCACCGCCGGA
GATCGATCTGTTGGGGATTGACGAACTGATTCGATCGACGGCTTGGAGGG
CGGTAAGGGTACTAGAGGGAGTGCGGGTGCTGGAGGAGGAGGGAGGGGGC
AGGGAGGGAGGGAGGAGGGGGAAAAGCAAAGGACAGGTGTTATGTAGGAA
AGTCCAGGTGATGATCGAGGCGACTCCGATTGAGGTTTTTATGGCGTGTA
TGGCGACTGAAGGGCCATATCGTCCCCCTTCGGTCCTTCCCTCCATCCCT
CCCTCCGCATTCTCCTCTACTCCTCTTCCTCCTTCCATCACTACCGCTGC
TACCACCGCCGACCATTCCTCACTTCCTTCTCCTCCTCCTCCTCCTCCTC
CTCCCTTCATGCGTCGCATCGCCTCCTCCTTCACCACCATCCAACGTTTG
GACGACCACACCGACATCCTCCACATCCGCCTCCGCCCTCCCTCCCTCCC
CTCCACCCCCCTTACCCCCCCTTCCTCCGCCCCATCCTTCGCTCTTTCCT
CCATCGTTTCCTCGCCCCCCGTGATTTCTGCGTCCTGCGgtactggcgac
tggacgatgatggcgcctacataatctgtctggcctcggtcgagcacccg
gagtgccctgtcgaggagggcagggagggcgggaaggagggaggactggg
gacggtgagagggacattgcagtcggtgttgtccattgcgccgagaaaag
ATTATGCAGATTACGAAGAGGATTTACCGGAGGCCCTGGTCTCTTACATC
GTGGAGGTGGATCCGGGAGGGTGGGTGGGAGGGGGGGGCCGAGGGAGGGA
GGGAGGGTGGTGGTGGAATATGGGAAGGGGGATTCGGGCGATGTACGCGG
ATGTGGTTCTGGCCCATATATTGGATGTGAAGGAGGAAGTGGATGCGGGG
AGGTTTAGAGGGAGGGATGGGGTGAGGGAGGAGGGGGGGGAAGAGGAGGG
GAGGACGCCGATGAGACAATCGTTGACACAGCGGCTATATGAGAAGGCAC
TGGGGCCGGTGAGGACTTCGACTTCCACGAAGAAGGGCAAGAAGAAAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGGTAGCGGTGATGGGAG
TATGCGTCAGCGGAAGAGGATGCTCTCTCCCATGGGCGAACGCGCCGAGG
AGGAAGAGGAGGAGGACGAGGGAGGGCGGGAGGGCGGGAAGGGACAACAG
CGGACGACGACCAGTGTTACAGCAGAGGCAGCGGCGCTTCGCAATGCTTT
GGCAGCCAAGGAATTTGAGGTTCATCGGCTGGAGAGGGAGATAGGGCGGG
GGGGAGGGACAGCTATGGGCGTTGGAGGGGGAGCAGTCCTGACCACTGGG
GGCGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTTGTTGGATACAAA
GGACCGGTCGTTGGAGCTCTTTAGGAGGCTGCAGGAGCAAGTTAACGAGG
TTGAAAGGCTCAAAAGGCGATACAGGAGCTTGACTGGTTTGGAGTACGGA
CTGCCCTTCCGTGCATCCGCCACGGGAGCTGCCTCCCTCCCTGCCTGCCT
CCCTCCCTCCCTTCCCGCCGCTAGCGCGACGGTGCATGCTGGTAGTGGTG
GTGGTGATGGGGCTGGGAAGACGAGTCAGTCCTCAACCTCCTTCTTGTCC
TCATCCTCGTCCTCGTCCTCGTCCTCGTTCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTTCTTCGGGGACGTCAAGCGCAGCCTGACCCCTTCGCGAG
AGCAGCAGCAGCGACAGCAGCAGCCACAGCATCGGTTGCCTACCTCTCCT
TTGTCCGCCGCAAGAAAGGCGCTGATGCACCGCAGTGGTGGTAGCAGCAG
CCCGCGTAAGGGAGGGAAAAGTGGGGCAAAGAGGGGGGAAGGACAGAGGG
GGGGAAGGAAGAGGAAGGATGGGGGGAGGGAGGAGGAGTTAAAAGAGGAA
GAAGAGGAGGAGAAAGGCGCTTACGATTGGAATGAGGGTGTGCCGGATCA
CTGGACCTCAGCAGCGACGACGAGGAGGAGGGAGGAGGGGAGGAAGGGAG
GGATGGTTTCCGTGCTGGCTGCGGCGTTGATGGGGGAGGGGGAGGGAGGG
GGGGAGGGAGGGAATGTGTTGGAGGAAGTGGTAGGGACATTTGTGGGGTT
GCTGATGTTTTGCGCCCTACTTTTTCTCTCGCTCTCCTTGCGGGCGCAGG
TGTTGTGA
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protein sequence of NO08G00530.1

>NO08G00530.1-protein ID=NO08G00530.1-protein|Name=NO08G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1059bp
MASPPLSQQQQWHLFAKRNSPPPAPPSSAQQPPHQHWSFPRTRRDDSDSE
PNEAPPRAPILLEGYLKKKGARVHMWSSRYAMLRGNKLILVRGKKEEMEA
AAAAAAAFAATASASFRAEHNLHPGPPTREFILMSGSYVSDVRELPNAAG
KGKSLWMFRLHWPEGVKGYGLGARALSKGVLPSPVNRRAKSDGEDQEEEE
DDYDEYIDASYRGGAGRVPSRPITPSVAGTSTTAAAAAAEEGGGGRGEEK
KGATLQELAVQAAHTAKQQRTRAADIERAESHHQSLVTKGAGFAGVVVGG
VVIGALTAGVGLLPYLGLVGAAAVAGGGAVAYTAAQAPSESRVVLAAETE
AEARRWKGALELQIAVCEGRRPPPPPEIDLLGIDELIRSTAWRAVRVLEG
VRVLEEEGGGREGGRRGKSKGQVLCRKVQVMIEATPIEVFMACMATEGPY
RPPSVLPSIPPSAFSSTPLPPSITTAATTADHSSLPSPPPPPPPPFMRRI
ASSFTTIQRLDDHTDILHIRLRPPSLPSTPLTPPSSAPSFALSSIVSSPP
VISASCDYADYEEDLPEALVSYIVEVDPGGWVGGGGRGREGGWWWNMGRG
IRAMYADVVLAHILDVKEEVDAGRFRGRDGVREEGGEEEGRTPMRQSLTQ
RLYEKALGPVRTSTSTKKGKKKSSSSSSSSSSGSGSGDGSMRQRKRMLSP
MGERAEEEEEEDEGGREGGKGQQRTTTSVTAEAAALRNALAAKEFEVHRL
EREIGRGGGTAMGVGGGAVLTTGGAEGGREGGREGLLDTKDRSLELFRRL
QEQVNEVERLKRRYRSLTGLEYGLPFRASATGAASLPACLPPSLPAASAT
VHAGSGGGDGAGKTSQSSTSFLSSSSSSSSSSFSSSSSSSSSSFFGDVKR
SLTPSREQQQRQQQPQHRLPTSPLSAARKALMHRSGGSSSPRKGGKSGAK
RGEGQRGGRKRKDGGREEELKEEEEEEKGAYDWNEGVPDHWTSAATTRRR
EEGRKGGMVSVLAAALMGEGEGGGEGGNVLEEVVGTFVGLLMFCALLFLS
LSLRAQVL*
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Synonyms
Publications