NO08G00350, NO08G00350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G00350 vs. NCBI_GenBank
Match: EWM26537.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 171.0 bits (432), Expect = 3.800e-38 Identity = 166/420 (39.52%), Postives = 209/420 (49.76%), Query Frame = 0 Query: 1449 QQISRPAWQTLLRVAKAQVQEEREG-------------EKGG----GSGRQLTKNGRENLLWVLGAMFDAGIPPSNGDVDWVVQTLATAREWDALHKVLEKVAMAASFSRGG-----VGDEGNGSRGRGS-----------LDVIGCNRLLHALAREGEGKRALDFLSFMEDRLGVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTKEGWEGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRPDVVSYTNVIRAFEGGGSENAHVERAKAVRDLLKRVKAWGVRPDIMLWNSALRVSVKLGQWQLTQEILKEMDRDSIVPDEWTVRAVTSGGRVEGSAGRERGQTLALLRTMQDRNKD 1828 + +S AWQ L + AK +E G E G G++ + G E LLWVL AM +AG+ PS GD++W +Q LA+ + WDAL +LEK A A + GG VG++G G GS LDVIGCNRLLHA+A+ GEG+R++ FL FM DR+GV P ++ E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + PD +SYTNVIRA GG V K V +L+R KA +RPD L+NSAL+V V G W+L +E+LK+MD+ ++PDE+TVR +T G GQTLALLR MQDR D Sbjct: 128 RHLSWSAWQELAKAAKVLAKERESGGKRXXXXXRKAVSESGNDVREAGGKESSDQGGE-LLWVLKAMLEAGVAPSRGDLEWSLQMLASQKAWDALEDLLEKAA-AVHVAGGGKDESVVGEDGRGEDMGGSGRSQDPIKSTCLDVIGCNRLLHAMAQNGEGERSVTFLKFMRDRIGVVPDMISYTSAMDACGRGGDWRGALNLLETIEREKNRGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEPECLRPDTIACNVALEACAQGLQPNAALRLLKKMEEGWDGVQGMSPAPDQISYTNVIRALRRGGGNGEDV--VKTVHQILQRAKARKLRPDNRLYNSALKVYVHEGHWRLAKELLKDMDQRQMIPDEFTVRILTRGXXXXXXXXXXXGQTLALLRDMQDRLGD 543
BLAST of NO08G00350 vs. NCBI_GenBank
Match: CBN74228.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.8 bits (190), Expect = 4.300e-10 Identity = 76/294 (25.85%), Postives = 118/294 (40.14%), Query Frame = 0 Query: 696 LRVRPDLMAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCAR----GARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLL 986 + VRPD + + A +E G A LL+EM G+ DE +F A G+AG WR+ + ++++ AA + + + + + AC + + E L L + G R PV+ + +L G ++ RG V YT A+ A R+G+ E L + + ED + ++ + L CA+ G R A A +L GM G+R GV G+ + QA GLAGRWEDA+ LL Sbjct: 729 VEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEM-RDAGIAMDESAFHLAATAFGRAGLWRQGV--------RVAVVAAEQG-------------------IALAPTTLTSILGACAKQARWREALGLLQ-----------GTR------------PVLQQGLSSLPLSTG-----AGVVAGNERRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVG-DEAFFRVALKCCAKAGGVGERGDCSGAAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALL 965
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_018438850.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like [Raphanus sativus]) HSP 1 Score: 73.9 bits (180), Expect = 6.300e-9 Identity = 43/138 (31.16%), Postives = 78/138 (56.52%), Query Frame = 0 Query: 852 VIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990 VI+ T++ A + + + + +L++++ PDV+TY + + LGRAG E L L ++M+E+ + LN ++Y+TVL+ R R C V L + M G+ P +L Y +V+ + G +G ++A+ L EM+ Sbjct: 181 VINRTILAFA-ESRQVDKVVKILDKMKEWECKPDVITYNSVLDVLGRAGLVNEMLKLLSSMKEESDVSLNIITYNTVLNGTRRACR-FDMCLV----LYQEMVGCGIEPDLLSYTAVIDSLGRSGNTKEALRLFDEMK 312
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_010667236.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Beta vulgaris subsp. vulgaris] >KMS95510.1 hypothetical protein BVRB_007510 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 73.6 bits (179), Expect = 8.200e-9 Identity = 76/295 (25.76%), Postives = 128/295 (43.39%), Query Frame = 0 Query: 700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSP--VIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990 PD Y MK + G+ + + +L+ M E PD +S++T+I A KAG +A +L M A++ + A + + + + Q+D+ +L EM T AG SP V ++T+I D ALA E+RARG P ++YTT +KA +GQ K A +F M DP ++++ V+++ +++ C G + E A VE +R + G P V Y S+ LA + +A+++ E++ Sbjct: 377 PDSRIYTTLMKGYMKTGRVSDTVRMLEAMRRQEDSASHPDHVSYTTVISALVKAGSMDKARIVLAEM-ARIGVCA--------------------------NLVTYNILLKGYCQQLQVDKAKELVREM-----TGVAG------------ISPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLNDPRVKVDQVAWNMLVEGYCKMG---LIEEAKNVVERMR---EHGFHPNVSTYGSLANGIALARKPGEALLIWNEVK 621
BLAST of NO08G00350 vs. NCBI_GenBank
Match: KCW49707.1 (hypothetical protein EUGRSUZ_K03209 [Eucalyptus grandis]) HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8 Identity = 69/293 (23.55%), Postives = 127/293 (43.34%), Query Frame = 0 Query: 700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990 P+ Y MK +G+ ++ + LL+ M E PD +S++T+I A KAG +A +L M+ ++S+ A R + + + Q+D+ +L +EM+ V ++T+I D AL E+RARG P ++YTT +KA +GQ K A +F M +DP ++ + +++ +++ C G A ++++ M+++GL P V Y S+ LA + +A++L E++ Sbjct: 290 PNSRIYTTLMKGYMRMGRVKDTVRLLEAMRHEEDSSRHPDHISYTTVISALVKAGSMDQARRVLAEMK-RISVPANR--------------------------ITYNILLKGYCQQLQMDKAKELIKEMVSDAQVQP---------------DVVSYNTLIDGCIIIDDSSGALEFFNEMRARGIAPTKISYTTLMKAFASSGQPKLAHKVFDEMIQDPRVKPDVAAWNMLVEGYCKLG------LVEEAKKVVQRMKENGLYPDVATYGSLANGIALARKPGEALLLWNEIK 534
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_010037928.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Eucalyptus grandis]) HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8 Identity = 69/293 (23.55%), Postives = 127/293 (43.34%), Query Frame = 0 Query: 700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990 P+ Y MK +G+ ++ + LL+ M E PD +S++T+I A KAG +A +L M+ ++S+ A R + + + Q+D+ +L +EM+ V ++T+I D AL E+RARG P ++YTT +KA +GQ K A +F M +DP ++ + +++ +++ C G A ++++ M+++GL P V Y S+ LA + +A++L E++ Sbjct: 406 PNSRIYTTLMKGYMRMGRVKDTVRLLEAMRHEEDSSRHPDHISYTTVISALVKAGSMDQARRVLAEMK-RISVPANR--------------------------ITYNILLKGYCQQLQMDKAKELIKEMVSDAQVQP---------------DVVSYNTLIDGCIIIDDSSGALEFFNEMRARGIAPTKISYTTLMKAFASSGQPKLAHKVFDEMIQDPRVKPDVAAWNMLVEGYCKLG------LVEEAKKVVQRMKENGLYPDVATYGSLANGIALARKPGEALLLWNEIK 650
BLAST of NO08G00350 vs. NCBI_GenBank
Match: PIN18480.1 (hypothetical protein CDL12_08852 [Handroanthus impetiginosus]) HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8 Identity = 83/353 (23.51%), Postives = 146/353 (41.36%), Query Frame = 0 Query: 651 DEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDLMAYNATMKALSELGKHEEALSLLDEMVEKR--GLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREMEGEGGREGEGDE 1001 D+DE+ G E D E+ +V + V PD Y MK + G+ + + +L+ M ++ PD +S++T+I A KAG RA ++ M A++ + A + + + + Q+D+ L EM+ + AG V ++T+I D AL E+R RG P V+YTT +KA +GQ K A +F M +DP ++++ V+++ +++ C G A +++ M+ +G+ P V Y S+ LA + +A++L E++ G E EG+E Sbjct: 335 DDDEETGNESDE--------------FEKLLPNSVDFSSEPPELPHAVAPDSRIYTTLMKGYMKAGRVADTVRMLEAMRHQKDSSSHPDHVSYTTVISAFVKAGLMDRARQVVTEM-ARIQVPA--------------------------NLITYNILLKGYCQQLQIDKAEDLIREMV-----DEAGIEP----------DVVSYNTLIDGCILVDDSAGALTYFNEMRKRGIAPTKVSYTTLMKAFASSGQPKLANKVFDEMLKDPRVKVDLVAWNMLVEGYCKLG------LVDEAKSIIQKMKDNGVHPNVATYGSLANGIALARKPGEALLLWNEIKERCGIENEGEE 625
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_024522956.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Selaginella moellendorffii] >EFJ05378.1 hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii]) HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8 Identity = 84/358 (23.46%), Postives = 137/358 (38.27%), Query Frame = 0 Query: 648 REVDEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDL-----MAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFS-----TMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAH-----PDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDG--LRPGVLGYRSVLQACGLAGRWEDAMMLLREM 989 +E+ E D +E+ +T N + V +H+ MQ V+PD + Y +K L + G + A +L+ M G P + S T+I+AC AG+ RRA G L + + G S + + RS E LK+ EEM L + + ++++ R D+ AL +LEE++ G + PDVVTYTT +K L AG L + M+ ++ V Y ++D C P A+T + + + ++ LRP V + S+++A G E +L M Sbjct: 156 KEIFEILDCAKEKKLVNRKTMNAVMEACVH------CGDIHRTMQLFQYMVQPDACGVDEITYGTLIKGLGKAGLLDAAFQILESM--DLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDE-------------------------GPSLVTYNMLIKGYARSENPLEALKVREEMQLR----------------GMQLNKLSWNSLVMACVRGQDMDAALEILEEMKEAGKYSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAIIDACITAGS--PTDALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLKSRM 462
BLAST of NO08G00350 vs. NCBI_GenBank
Match: OVA18174.1 (Pentatricopeptide repeat [Macleaya cordata]) HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8 Identity = 70/303 (23.10%), Postives = 126/303 (41.58%), Query Frame = 0 Query: 699 RPDLMAYNATMKALSELGKHEEALSLLDEMVEK--RGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREMEGEGGREGEG 999 +PD Y MK + G+ + + +L+ M + PD ++++T+I A K G RA +L M A++ + A R + + + Q+D+ +L EM + V ++ +I D AL E+RARG P V+YTT +KA +GQ K +F M +DP ++++ V+++ +++ C G A +++ M++DG P V Y S+ +A + +A++L E++G E EG Sbjct: 362 KPDSRIYTTLMKGYMKEGRIGDVVRMLEAMRHQSDSSSHPDHVTYTTVISALVKVGSMERARQVLAEM-ARVGVPANR--------------------------ITYNVLLKGYCQQLQIDKAKELIREMASNAGVEP---------------DVVSYNILIDGFILIDDSAGALEYFNEMRARGIAPTKVSYTTLMKAFASSGQPKLVHKVFDEMLKDPRVKVDQVAWNMLVEGYCKLG------LVEEAKKIVERMREDGFYPDVATYGSLANGIAVARKPGEALLLWNEVKGRCREEKEG 616
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_024532861.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Selaginella moellendorffii]) HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8 Identity = 84/358 (23.46%), Postives = 137/358 (38.27%), Query Frame = 0 Query: 648 REVDEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDL-----MAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFS-----TMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAH-----PDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDG--LRPGVLGYRSVLQACGLAGRWEDAMMLLREM 989 +E+ E D +E+ +T N + V +H+ MQ V+PD + Y +K L + G + A +L+ M G P + S T+I+AC AG+ RRA G L + + G S + + RS E LK+ EEM L + + ++++ R D+ AL +LEE++ G + PDVVTYTT +K L AG L + M+ ++ V Y ++D C P A+T + + + ++ LRP V + S+++A G E +L M Sbjct: 156 KEIFEILDCAKEKKLVNRKTMNAVMEACVH------CGDIHRTMQLFQYMVQPDACGVDEITYGTLIKGLGKAGLLDAAFQILESM--DLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDE-------------------------GPSLVTYNMLIKGYARSENPLEALKVREEMQLR----------------GMQLNKLSWNSLVMACVRGQDMDAALEILEEMKEAGKYSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAIIDACITAGS--PTDALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLKSRM 462 The following BLAST results are available for this feature:
BLAST of NO08G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G00350 ID=NO08G00350|Name=NO08G00350|organism=Nannochloropsis oceanica|type=gene|length=7140bpback to top protein sequence of NO08G00350.1 >NO08G00350.1-protein ID=NO08G00350.1-protein|Name=NO08G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=2034bpback to top Synonyms
Publications
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