NO08G00260, NO08G00260 (gene) Nannochloropsis oceanica

Overview
NameNO08G00260
Unique NameNO08G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr8:105605..107435 +

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Properties
Property NameValue
DescriptionDdi1p
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:105605..107435 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO:0004190aspartic-type endopeptidase activity
GO:0016787hydrolase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR033322DDI1
IPR019103Peptidase_aspartic_DDI1-type
Homology
BLAST of NO08G00260 vs. NCBI_GenBank
Match: EWM26489.1 (ddi1p [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0
Query:  296 QQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI 363
            Q+MLYVDC IN+RRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI
Sbjct:  316 QEMLYVDCAINHRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI 382          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: EWM26491.1 (hypothetical protein Naga_100646g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 117.5 bits (293), Expect = 1.100e-22
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 0
Query:  364 LGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLGGAVEKSREEIVPFSISAVPPQVFGKADG 439
            LGRFQIQTR+SIIDSLSPPFVIGLDVLRHC+C +SFQ++ L+LRS GGAVEKSREE VPFSI A P  V  K  G
Sbjct:    4 LGRFQIQTRISIIDSLSPPFVIGLDVLRHCRCDVSFQNQALILRSPGGAVEKSREETVPFSIGAAPSPVITKEGG 78          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: KFM75189.1 (Protein DDI1-like protein, partial [Stegodyphus mimosarum])

HSP 1 Score: 97.8 bits (242), Expect = 9.200e-17
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 0
Query:  286 MQVHKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLG--------GAVEKS--REEIVPFSISAVPPQVFGKADGREKG 443
            ++ H E   Q  MLY++C +N   +RA +D+GA TT+MS A A  CG++  +D    G  KGVG  KILG VH   I +    +Q+  SI++      ++GLD+L+  QC I  +  VLV+ + G        G + +S   E +VP  +   PP      + + KG
Sbjct:  212 IEYHPESFGQVTMLYINCKVNGHAVRAFIDSGAQTTIMSQACAERCGIMRLVDKRWAGYAKGVGIQKILGRVHLGHIQINDVFLQSSFSILEDQVMDMLLGLDMLKRHQCCIDLKRNVLVIGTTGTETPFLSEGDLPRSVLTEPLVPGEMDTSPPGTSTSKNNQSKG 378          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: CBJ32761.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.3 bits (238), Expect = 2.700e-16
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 0
Query:  286 MQVHKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLGGAVEKSREEIVPFS 425
            M+   E+  +  MLY+D  IN  R++A VD+GA +T+MS A A +CGL+  +DT   G  +GVG  KILG +H A+I +G        +I+ +    F+ GLD+L+   CVI  +  +L L S G +V    E+ +P S
Sbjct:  187 MEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSS 325          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: CBN77640.1 (Peptidase aspartic, catalytic; UBA-like [Ectocarpus siliculosus])

HSP 1 Score: 95.9 bits (237), Expect = 3.500e-16
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  298 MLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVIS 399
            ML+++C +N R LRA VDTGA  TVMS A A  CGL S ID S  G   GVGFA+ILG +H+A I +G   ++  +++I+      ++GLDVLR  +C IS
Sbjct:  211 MLFLECEVNGRVLRAFVDTGAQVTVMSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGNSCLRCSLTVIEHGEIDLLVGLDVLRAHRCEIS 311          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: NP_001018195.1 (UBA domain protein Mud1 [Schizosaccharomyces pombe] >Q10256.1 RecName: Full=UBA domain-containing protein mud1; AltName: Full=DNA-damage-inducible protein DDI1 homolog; AltName: Full=UBA domain-containing protein 1 >CAA93579.1 UBA domain protein Mud1 [Schizosaccharomyces pombe])

HSP 1 Score: 95.9 bits (237), Expect = 3.500e-16
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 0
Query:  289 HKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLGGAVEKSREEIVPFSISAVPP 431
            H E+  Q  ML+V+  IN  +++A VD+GA  T++S   A +CGL   +DT   G  KGVG AKILGCVH A + +G   +  R ++I+      ++GLD+LR  Q  I  ++   VLR  G  +    E  +P  ++ V P
Sbjct:  101 HPEVFGQVYMLFVNVEINGHKVKAFVDSGAQATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPLKIGDLYLPCRFTVIEGRDVDMLLGLDMLRRYQACIDLENN--VLRIHGKEIPFLGESEIPKLLANVEP 240          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: XP_020436941.1 (ubiquitin-associated domain-containing protein [Heterostelium album PN500] >EFA84830.1 ubiquitin-associated domain-containing protein [Heterostelium album PN500])

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-15
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 0
Query:  298 MLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDS--LSPPFVIGLDVLRHCQCVISFQDKVLVLRSLGGAV--EKSREEIV----PFSISAVPP 431
            MLY+DCTINN  ++  VDTGA  ++M+L  AR+CGL   ID    G  KGVG AKI+G VH A++ +G   I   +SI+DS      F+ GLD+L+  Q +++ +D VL    +      EK  +EI+    P   + VPP
Sbjct:  203 MLYLDCTINNHPIKVFVDTGAQKSIMTLNCARKCGLDRLIDKRFQGIAKGVGTAKIVGRVHAAEMNMGSAHITISLSILDSPGQDTEFIFGLDMLKKHQALVNLRDNVLEFGEMRVPFLQEKDLKEILEKNDPLPENYVPP 343          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: XP_014666622.1 (PREDICTED: protein DDI1 homolog 2-like [Priapulus caudatus])

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-15
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 0
Query:  298 MLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLG 411
            MLY+DC +N  +++A VD+GA TT+MS A A  C +   IDT   G  KGVG  KI+G VH  +I +G+  + +  SI++      ++GLD+LR  QC+I  +  +LV+ + G
Sbjct:  221 MLYIDCRVNGHQVKAFVDSGAQTTIMSQACAERCNIKRLIDTRWAGVAKGVGTQKIIGRVHLGQIQIGKDFLTSSFSILEDQPMDMLLGLDMLRRHQCIIDLKRNLLVIGTTG 333          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: GAQ81962.1 (DNA damage-inducible protein 1 [Klebsormidium nitens])

HSP 1 Score: 92.4 bits (228), Expect = 3.900e-15
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 0
Query:  286 MQVHKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRSLGGAVEKSREEIVP 423
            M+ + E   +  MLYVD  +N   L+A VDTGA +T+MS A A+ CG++  +D    G  KGVG +KI+G VH A I +G+  +    +I+++    F+ GLD+LR  QCVI  +D  L   S   AV    E  +P
Sbjct:  185 MEHNPEAFGRVVMLYVDMEVNGMPLKAFVDTGAQSTIMSEACAKRCGIMRLVDKRYHGIAKGVGTSKIIGRVHLATIKVGQVFLPCTFTILENQDMEFIFGLDMLRKHQCVIDLKDSSLRFGSSDIAVPFLPEHEIP 321          
BLAST of NO08G00260 vs. NCBI_GenBank
Match: CCE28757.1 (related to SNARE binding protein [Claviceps purpurea 20.1])

HSP 1 Score: 92.0 bits (227), Expect = 5.000e-15
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = 0
Query:  286 MQVHKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQDKVLVLRS-----LGGAVEKSREEIVPFSISAVPPQVFGKADGREKG 443
            M+ + E+  +  +LY+D  +N  R++A VD+GA  T+MS A A +CG++  IDT   G  +GVG AKILG VH A+I +G   +    ++++  S   ++GLD+L+  Q  I      L+++      LG A     EE  P    A  P   G   G+E G
Sbjct:  183 MEHNPEVFGRVHLLYIDVEVNGHRVKALVDSGAQATIMSPAYAEDCGIMRLIDTRFAGVARGVGTAKILGRVHSAQIKVGNLFLPCSFTVMEGKSTHLLLGLDMLKRYQATIDLSRDRLIIQGEEIPFLGEADIPKDEE--PVEQEATIPGPAGTTIGQETG 342          
The following BLAST results are available for this feature:
BLAST of NO08G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26489.11.300e-2695.52ddi1p [Nannochloropsis gaditana][more]
EWM26491.11.100e-2276.00hypothetical protein Naga_100646g4, partial [Nanno... [more]
KFM75189.19.200e-1734.13Protein DDI1-like protein, partial [Stegodyphus mi... [more]
CBJ32761.12.700e-1638.13conserved unknown protein [Ectocarpus siliculosus][more]
CBN77640.13.500e-1648.51Peptidase aspartic, catalytic; UBA-like [Ectocarpu... [more]
NP_001018195.13.500e-1637.32UBA domain protein Mud1 [Schizosaccharomyces pombe... [more]
XP_020436941.11.300e-1541.13ubiquitin-associated domain-containing protein [He... [more]
XP_014666622.12.300e-1540.71PREDICTED: protein DDI1 homolog 2-like [Priapulus ... [more]
GAQ81962.13.900e-1539.42DNA damage-inducible protein 1 [Klebsormidium nite... [more]
CCE28757.15.000e-1534.57related to SNARE binding protein [Claviceps purpur... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009056NSK009056Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00260.1NO08G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100646g4gene4036Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00260.1NO08G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00260 ID=NO08G00260|Name=NO08G00260|organism=Nannochloropsis oceanica|type=gene|length=1831bp
ATGCACCCTCCGCGCCGTCGCTCGTCCTTGGGCCTCATTCTTCCCCCAGC
CGTCCTCCTCGCCGTCCTCCTCAGCCCGACCTCCACCGTTAATGCCGCCT
TGCCTTGGGGCCGTGGGCGTGGAGGAGGTGACATGCATGGTCTCATGCCT
CCTACCCCCCCCACCTCGTCCTCGCTCCCTTCCTACCCCCGTCACAACCA
CCGCCACCAACAGCACCAACCCACCCACCATGTAGCTAGCGCGACGGCCC
ACTTCCGGATGCGCCGCGAGAAGGGCGAGGAAGGGGAAGAGGAAGAGGAG
AGAAGACAGATAGAGGAGCTGGGAGATGGGGAAACGGCAGGGGCTGACTG
TACATACGCGAGTTTTCGTGCACAGATTCGGAGGGAAGTGGAGGAGGAGA
GTCGGAAGGAGGAGGAAAGGGAGCTGAAGCGGACGAGGGCGGCGTATTTC
TCCCACTTGGCGGAGGAACGACGACAACGGACAGCGGCAAGTAATAGGAG
AGAGGGAGGAGAAGGTGGAGAAAGGGTGGGAGAGGGAATGGGCCTGGGAG
GAGGAGGGTATGGGCGGGGAGGAGAGGTGGGGGAGGAAGAGGAGGATGTG
GCCTCGCCCCGATTCGTGAGGAGAAACAGCGGTTCAAGAGGAGGCGGGGG
GGCTTTGACAGAGCAGGAGGAGACGGAAGGGTCGTTACCAGCCTATTCCC
TTTCCTCGTCTTCGTCCTCCACGCCTCCTTCCTCCATTCCCTTGGTCCGT
CGCGCCGTTAGGAAGGAAAAAGGAGGAGGGAGGGAAGAAGGGAAGGAGGG
GGAGGTGAATGCGACGGCCACTGCGGGGGTAGGCGCGCGGCAGAGTGTAG
TGCATATGCAAGTTCACAAGGAGCTGCACCACCAGCAGCAGATGCTCTAT
GTTGACTGCACGATCAACAATCGgtaagggagggaggaaaagagggaggg
aggggaaaagcggcctccgttacgggtccaatcgtacgttgcctattcct
ccgactaatctcccctctctcccttcctctttccctccctccctccccca
gCCGCCTCCGGGCCTGCGTTGACACGGGCGCCTCCACCACCGTGATGTCC
CTGGCCATGGCGAGGGAATGCGGCCTGCTCTCCCACATTGATACGTCGGT
GGTGGGGGGCGTGAAGGGCGTTGGATTTGCCAAGATCCTGGGATGTGTGC
ACGAGGCCAAGATCCTgtgagatgggagggagggagggggagagggaagg
gatgtcctgcacttatgtcgggggtggatggggtggatgggtgcatcttt
tttcttgttatttctcgtcctttctttttctttgccccttatcgttggcc
aagcacaacatgaacctgctgagggcactcaccctcctccccttccctcc
ctccctcagCCTGGGTCGGTTTCAGATCCAGACGCGGGTGTCGATCATCG
ACTCGCTCTCGCCCCCCTTTGTGATCGGACTGGATGTGCTACGGCACTGC
CAATGCGTCATCTCCTTCCAGGACAAGgtacggagggtgggagggttagg
agggaaggagggaggaagcgcattcatccaagcatccccttccacgactc
aactctccttcctcttcctccctcccttcctccctcccttcctccctccc
tcagGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCGGG
AAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTGGA
AAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGAGGAGGGGCA
GGAGCCGCAGAGGAGGAGGAAGAGCCTTTAG
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protein sequence of NO08G00260.1

>NO08G00260.1-protein ID=NO08G00260.1-protein|Name=NO08G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MHPPRRRSSLGLILPPAVLLAVLLSPTSTVNAALPWGRGRGGGDMHGLMP
PTPPTSSSLPSYPRHNHRHQQHQPTHHVASATAHFRMRREKGEEGEEEEE
RRQIEELGDGETAGADCTYASFRAQIRREVEEESRKEEERELKRTRAAYF
SHLAEERRQRTAASNRREGGEGGERVGEGMGLGGGGYGRGGEVGEEEEDV
ASPRFVRRNSGSRGGGGALTEQEETEGSLPAYSLSSSSSSTPPSSIPLVR
RAVRKEKGGGREEGKEGEVNATATAGVGARQSVVHMQVHKELHHQQQMLY
VDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGF
AKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQ
DKVLVLRSLGGAVEKSREEIVPFSISAVPPQVFGKADGREKGEEGGGEEG
QEPQRRRKSL*
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Synonyms
Publications