NO08G00260.1, NO08G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00260.1
Unique NameNO08G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1383
Alignment locationchr8:105605..107435 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:105605..107435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00260.1 vs.
Match: EWM26489.1 (ddi1p [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 1.300e-74
Identity = 208/368 (56.52%), Postives = 239/368 (64.95%), Query Frame = 0 
Query:   13 ILPPAVLLAVLLSPTSTVNAALPWGRGRGGGDMHGLMPPTPPTSSSLPSYPRHNHRHQQHQPTHHVASATAHFRMRREKGEEGEEEEERRQIEELGDGETAGADCTYASFRAQIRREVEEESRKEEERELKRTRAAYFSHLAEERRQRTAASNRREGGEGGERVGEGMGLGGGGYGRGGEVG--EEEEDVASPRFVRRN-SGSRGGGGALTEQEETEG-------SLPAYSLSSSSSS---TPPSSIPLVRRAVRKEKGGGREEGKE--GEVNA---TATAGVGARQSVVHMQVHKELHHQQQMLYVDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI 363
            +LPPA+LLA+LLSPTSTV+A L WGR RG G +H   P T    +S  S+PR         PTHH+ASATAHFR+R E  EE E +E +    E G+G   G+DCTYASFRAQIRREVEEESR EEEREL R R +Y  HLAEERR+  A S  +E  +G    GE  G+      R G  G     + V   R  RR  S  R G  A       EG        LP++  SSS+ S     P +  +  R   + +  GREEG+E   E  A   TA AG GARQSV+H+QVHKELHHQQ+MLYVDC IN+RRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI
Sbjct:   32 VLPPALLLALLLSPTSTVDATLYWGR-RGTG-VHAPAPSTSIPPASPRSHPR--------GPTHHLASATAHFRLRPE--EEDEAKEGKETTREEGEG---GSDCTYASFRAQIRREVEEESRLEEERELARARTSYAFHLAEERRRTGAGSESKE--KGRRAGGEMGGVRAWARKRSGPEGRRSSRKSVFMDRESRRALSYGRSGQAAAASVASEEGVLERQGRELPSFPPSSSAPSPLDRSPGTEMVEGRVTEEGREEGREEGREVGNEAPANTTTAGAGAGARQSVIHLQVHKELHHQQEMLYVDCAINHRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGFAKILGCVHEAKI 382
The following BLAST results are available for this feature:
BLAST of NO08G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26489.11.300e-7456.52ddi1p [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00260NO08G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00260.1NO08G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00260.1.cds1NO08G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00260.1.cds2NO08G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00260.1.cds3NO08G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00260.1.cds4NO08G00260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00260.1 ID=NO08G00260.1|Name=NO08G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
ATGCACCCTCCGCGCCGTCGCTCGTCCTTGGGCCTCATTCTTCCCCCAGC
CGTCCTCCTCGCCGTCCTCCTCAGCCCGACCTCCACCGTTAATGCCGCCT
TGCCTTGGGGCCGTGGGCGTGGAGGAGGTGACATGCATGGTCTCATGCCT
CCTACCCCCCCCACCTCGTCCTCGCTCCCTTCCTACCCCCGTCACAACCA
CCGCCACCAACAGCACCAACCCACCCACCATGTAGCTAGCGCGACGGCCC
ACTTCCGGATGCGCCGCGAGAAGGGCGAGGAAGGGGAAGAGGAAGAGGAG
AGAAGACAGATAGAGGAGCTGGGAGATGGGGAAACGGCAGGGGCTGACTG
TACATACGCGAGTTTTCGTGCACAGATTCGGAGGGAAGTGGAGGAGGAGA
GTCGGAAGGAGGAGGAAAGGGAGCTGAAGCGGACGAGGGCGGCGTATTTC
TCCCACTTGGCGGAGGAACGACGACAACGGACAGCGGCAAGTAATAGGAG
AGAGGGAGGAGAAGGTGGAGAAAGGGTGGGAGAGGGAATGGGCCTGGGAG
GAGGAGGGTATGGGCGGGGAGGAGAGGTGGGGGAGGAAGAGGAGGATGTG
GCCTCGCCCCGATTCGTGAGGAGAAACAGCGGTTCAAGAGGAGGCGGGGG
GGCTTTGACAGAGCAGGAGGAGACGGAAGGGTCGTTACCAGCCTATTCCC
TTTCCTCGTCTTCGTCCTCCACGCCTCCTTCCTCCATTCCCTTGGTCCGT
CGCGCCGTTAGGAAGGAAAAAGGAGGAGGGAGGGAAGAAGGGAAGGAGGG
GGAGGTGAATGCGACGGCCACTGCGGGGGTAGGCGCGCGGCAGAGTGTAG
TGCATATGCAAGTTCACAAGGAGCTGCACCACCAGCAGCAGATGCTCTAT
GTTGACTGCACGATCAACAATCGCCGCCTCCGGGCCTGCGTTGACACGGG
CGCCTCCACCACCGTGATGTCCCTGGCCATGGCGAGGGAATGCGGCCTGC
TCTCCCACATTGATACGTCGGTGGTGGGGGGCGTGAAGGGCGTTGGATTT
GCCAAGATCCTGGGATGTGTGCACGAGGCCAAGATCCTCCTGGGTCGGTT
TCAGATCCAGACGCGGGTGTCGATCATCGACTCGCTCTCGCCCCCCTTTG
TGATCGGACTGGATGTGCTACGGCACTGCCAATGCGTCATCTCCTTCCAG
GACAAGGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCG
GGAAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTG
GAAAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGAGGAGGGG
CAGGAGCCGCAGAGGAGGAGGAAGAGCCTTTAG
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protein sequence of NO08G00260.1

>NO08G00260.1-protein ID=NO08G00260.1-protein|Name=NO08G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MHPPRRRSSLGLILPPAVLLAVLLSPTSTVNAALPWGRGRGGGDMHGLMP
PTPPTSSSLPSYPRHNHRHQQHQPTHHVASATAHFRMRREKGEEGEEEEE
RRQIEELGDGETAGADCTYASFRAQIRREVEEESRKEEERELKRTRAAYF
SHLAEERRQRTAASNRREGGEGGERVGEGMGLGGGGYGRGGEVGEEEEDV
ASPRFVRRNSGSRGGGGALTEQEETEGSLPAYSLSSSSSSTPPSSIPLVR
RAVRKEKGGGREEGKEGEVNATATAGVGARQSVVHMQVHKELHHQQQMLY
VDCTINNRRLRACVDTGASTTVMSLAMARECGLLSHIDTSVVGGVKGVGF
AKILGCVHEAKILLGRFQIQTRVSIIDSLSPPFVIGLDVLRHCQCVISFQ
DKVLVLRSLGGAVEKSREEIVPFSISAVPPQVFGKADGREKGEEGGGEEG
QEPQRRRKSL*
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mRNA from alignment at chr8:105605..107435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00260.1 ID=NO08G00260.1|Name=NO08G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr8:105605..107435+ (Nannochloropsis oceanica)
ATGCACCCTCCGCGCCGTCGCTCGTCCTTGGGCCTCATTCTTCCCCCAGC
CGTCCTCCTCGCCGTCCTCCTCAGCCCGACCTCCACCGTTAATGCCGCCT
TGCCTTGGGGCCGTGGGCGTGGAGGAGGTGACATGCATGGTCTCATGCCT
CCTACCCCCCCCACCTCGTCCTCGCTCCCTTCCTACCCCCGTCACAACCA
CCGCCACCAACAGCACCAACCCACCCACCATGTAGCTAGCGCGACGGCCC
ACTTCCGGATGCGCCGCGAGAAGGGCGAGGAAGGGGAAGAGGAAGAGGAG
AGAAGACAGATAGAGGAGCTGGGAGATGGGGAAACGGCAGGGGCTGACTG
TACATACGCGAGTTTTCGTGCACAGATTCGGAGGGAAGTGGAGGAGGAGA
GTCGGAAGGAGGAGGAAAGGGAGCTGAAGCGGACGAGGGCGGCGTATTTC
TCCCACTTGGCGGAGGAACGACGACAACGGACAGCGGCAAGTAATAGGAG
AGAGGGAGGAGAAGGTGGAGAAAGGGTGGGAGAGGGAATGGGCCTGGGAG
GAGGAGGGTATGGGCGGGGAGGAGAGGTGGGGGAGGAAGAGGAGGATGTG
GCCTCGCCCCGATTCGTGAGGAGAAACAGCGGTTCAAGAGGAGGCGGGGG
GGCTTTGACAGAGCAGGAGGAGACGGAAGGGTCGTTACCAGCCTATTCCC
TTTCCTCGTCTTCGTCCTCCACGCCTCCTTCCTCCATTCCCTTGGTCCGT
CGCGCCGTTAGGAAGGAAAAAGGAGGAGGGAGGGAAGAAGGGAAGGAGGG
GGAGGTGAATGCGACGGCCACTGCGGGGGTAGGCGCGCGGCAGAGTGTAG
TGCATATGCAAGTTCACAAGGAGCTGCACCACCAGCAGCAGATGCTCTAT
GTTGACTGCACGATCAACAATCGGTAAGGGAGGGAGGAAAAGAGGGAGGG
AGGGGAAAAGCGGCCTCCGTTACGGGTCCAATCGTACGTTGCCTATTCCT
CCGACTAATCTCCCCTCTCTCCCTTCCTCTTTCCCTCCCTCCCTCCCCCA
GCCGCCTCCGGGCCTGCGTTGACACGGGCGCCTCCACCACCGTGATGTCC
CTGGCCATGGCGAGGGAATGCGGCCTGCTCTCCCACATTGATACGTCGGT
GGTGGGGGGCGTGAAGGGCGTTGGATTTGCCAAGATCCTGGGATGTGTGC
ACGAGGCCAAGATCCTGTGAGATGGGAGGGAGGGAGGGGGAGAGGGAAGG
GATGTCCTGCACTTATGTCGGGGGTGGATGGGGTGGATGGGTGCATCTTT
TTTCTTGTTATTTCTCGTCCTTTCTTTTTCTTTGCCCCTTATCGTTGGCC
AAGCACAACATGAACCTGCTGAGGGCACTCACCCTCCTCCCCTTCCCTCC
CTCCCTCAGCCTGGGTCGGTTTCAGATCCAGACGCGGGTGTCGATCATCG
ACTCGCTCTCGCCCCCCTTTGTGATCGGACTGGATGTGCTACGGCACTGC
CAATGCGTCATCTCCTTCCAGGACAAGGTACGGAGGGTGGGAGGGTTAGG
AGGGAAGGAGGGAGGAAGCGCATTCATCCAAGCATCCCCTTCCACGACTC
AACTCTCCTTCCTCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCC
TCAGGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCGGG
AAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTGGA
AAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGAGGAGGGGCA
GGAGCCGCAGAGGAGGAGGAAGAGCCTTTAG
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Coding sequence (CDS) from alignment at chr8:105605..107435+

>NO08G00260.1 ID=NO08G00260.1|Name=NO08G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr8:105605..107435+ (Nannochloropsis oceanica)
ATGCACCCTCCGCGCCGTCGCTCGTCCTTGGGCCTCATTCTTCCCCCAGC
CGTCCTCCTCGCCGTCCTCCTCAGCCCGACCTCCACCGTTAATGCCGCCT
TGCCTTGGGGCCGTGGGCGTGGAGGAGGTGACATGCATGGTCTCATGCCT
CCTACCCCCCCCACCTCGTCCTCGCTCCCTTCCTACCCCCGTCACAACCA
CCGCCACCAACAGCACCAACCCACCCACCATGTAGCTAGCGCGACGGCCC
ACTTCCGGATGCGCCGCGAGAAGGGCGAGGAAGGGGAAGAGGAAGAGGAG
AGAAGACAGATAGAGGAGCTGGGAGATGGGGAAACGGCAGGGGCTGACTG
TACATACGCGAGTTTTCGTGCACAGATTCGGAGGGAAGTGGAGGAGGAGA
GTCGGAAGGAGGAGGAAAGGGAGCTGAAGCGGACGAGGGCGGCGTATTTC
TCCCACTTGGCGGAGGAACGACGACAACGGACAGCGGCAAGTAATAGGAG
AGAGGGAGGAGAAGGTGGAGAAAGGGTGGGAGAGGGAATGGGCCTGGGAG
GAGGAGGGTATGGGCGGGGAGGAGAGGTGGGGGAGGAAGAGGAGGATGTG
GCCTCGCCCCGATTCGTGAGGAGAAACAGCGGTTCAAGAGGAGGCGGGGG
GGCTTTGACAGAGCAGGAGGAGACGGAAGGGTCGTTACCAGCCTATTCCC
TTTCCTCGTCTTCGTCCTCCACGCCTCCTTCCTCCATTCCCTTGGTCCGT
CGCGCCGTTAGGAAGGAAAAAGGAGGAGGGAGGGAAGAAGGGAAGGAGGG
GGAGGTGAATGCGACGGCCACTGCGGGGGTAGGCGCGCGGCAGAGTGTAG
TGCATATGCAAGTTCACAAGGAGCTGCACCACCAGCAGCAGATGCTCTAT
GTTGACTGCACGATCAACAATCGCCGCCTCCGGGCCTGCGTTGACACGGG
CGCCTCCACCACCGTGATGTCCCTGGCCATGGCGAGGGAATGCGGCCTGC
TCTCCCACATTGATACGTCGGTGGTGGGGGGCGTGAAGGGCGTTGGATTT
GCCAAGATCCTGGGATGTGTGCACGAGGCCAAGATCCTCCTGGGTCGGTT
TCAGATCCAGACGCGGGTGTCGATCATCGACTCGCTCTCGCCCCCCTTTG
TGATCGGACTGGATGTGCTACGGCACTGCCAATGCGTCATCTCCTTCCAG
GACAAGGTCCTCGTCCTTCGTAGCCTTGGCGGGGCCGTGGAGAAGAGCCG
GGAAGAAATCGTCCCTTTTTCCATCAGCGCTGTCCCTCCCCAAGTCTTTG
GAAAGGCGGATGGAAGGGAGAAGGGAGAGGAAGGAGGGGGGGAGGAGGGG
CAGGAGCCGCAGAGGAGGAGGAAGAGCCTTTAG
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Synonyms
Publications