NO08G00160, NO08G00160 (gene) Nannochloropsis oceanica

Overview
NameNO08G00160
Unique NameNO08G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4268
Alignment locationchr8:60499..64766 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:60499..64766 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: EWM26518.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 7.300e-73
Identity = 138/169 (81.66%), Postives = 152/169 (89.94%), Query Frame = 0 
Query:  304 ALMNLRFPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCARREWEHERGSEGATGGGVEGILPPLFAHGHRRLPLPMSGGSRQHHLQQVQMLTGQLLQTQLELQAQVQHYITSQVNIQSELVKDTVS 473
            +LM+LRFP QHETDFVGAVFKLGL+CSSPKVLMDLMPMT+TLTTEHIKSHLQKYRLHG RSK+EFVEY+NGYMRGPFASFCARREWEH+R   G      +G+LPPLFAHGHRRLP  + GG+RQHHLQQVQ LTGQLLQTQL+LQ QVQHYITSQ+ IQSEL+KDTVS
Sbjct:  308 SLMSLRFPPQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGP-----DGLLPPLFAHGHRRLPPALGGGNRQHHLQQVQALTGQLLQTQLDLQVQVQHYITSQITIQSELIKDTVS 471
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: CBJ29351.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 1.900e-12
Identity = 36/57 (63.16%), Postives = 50/57 (87.72%), Query Frame = 0 
Query:  317 DFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFN 374
            DFV AVF +GLKC+SPK+L+++MP+ + LT+EHIKSHLQKYRLH  RS++EF++ +N
Sbjct:  143 DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 199
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: EWM27574.1 (two-component response regulator arr12 [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 9.400e-12
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 0 
Query:  310 FPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCA 386
            +P     DFV A+F +GLKC+SPK +M++M  T+ LT +HIKSHLQKYRLH  R+++EF+++F    + PF +  A
Sbjct:   60 WPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHFG---KNPFVAGAA 132
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: CBJ25938.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 3.700e-8
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:  311 PAQHETDFVGAVFKLGLKCSSPKVLMDLM-PMTETLTTEHIKSHLQKYRLHGNRSK 366
            P +    F  A+F+LGLK SSPKVLM LM P   +LTTEHIKS LQKYRLH +RSK
Sbjct:   15 PDKASASFAAAIFELGLKHSSPKVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSK 70
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: OEU21412.1 (hypothetical protein FRACYDRAFT_235035 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9 bits (167), Expect = 6.300e-8
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:  310 FPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMR 378
            +P     DFV A+F +GLK SSP  +++ M   E +TTE IKSHLQKYRLH  +SK EF+  +   +R
Sbjct:  291 WPEDLHRDFVSAIFDVGLKHSSPATILEHMSKHEQITTERIKSHLQKYRLHRVKSKKEFISSYEASLR 358
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: XP_002181659.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46873.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-7
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  310 FPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMR 378
            +P     DFV A+F +GLK SSP  +++ MP    +T+E IKSHLQKYRLH  +SK +F+  ++  +R
Sbjct:  224 WPEDLHRDFVSAIFDVGLKQSSPSTILETMPKHADVTSERIKSHLQKYRLHRIKSKQDFMTAYDATVR 291
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: GAX20002.1 (hypothetical protein FisN_1Lh524 [Fistulifera solaris])

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-7
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:  310 FPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYM 377
            +P     DFV AVF +GLK SSP  +++ MP  E + +E +KSHLQKYR++ N+SK EF+  ++  M
Sbjct:  175 WPDDLHRDFVAAVFDVGLKHSSPSAILEHMPAHEQINSERVKSHLQKYRINRNKSKKEFMTAYDSSM 241
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: GAX14324.1 (hypothetical protein FisN_1Hh524 [Fistulifera solaris])

HSP 1 Score: 66.6 bits (161), Expect = 3.100e-7
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:  310 FPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYM 377
            +P     DFV AVF +GLK SSP  +++ MP  E + +E +KSHLQKYR++ N+SK EF+  ++  M
Sbjct:  173 WPDDLHRDFVAAVFDVGLKHSSPSAILEHMPAHEQINSERVKSHLQKYRINRNKSKREFMTAYDSSM 239
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: XP_009836907.1 (hypothetical protein H257_11609 [Aphanomyces astaci] >ETV73481.1 hypothetical protein H257_11609 [Aphanomyces astaci])

HSP 1 Score: 65.5 bits (158), Expect = 7.000e-7
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:  318 FVGAVFKLGLKCSSPKVLMDLM---PMTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFN 374
            FV AVF +GLK +SPK L+ LM     T  LTTEH+KSHLQKYRL+ +RS+ EF+++F+
Sbjct:   97 FVAAVFDVGLKNASPKALLTLMGTPACTNGLTTEHLKSHLQKYRLNYDRSRVEFLKFFD 155
[Close]
BLAST of NO08G00160 vs. NCBI_GenBank
Match: OQR81572.1 (hypothetical protein THRCLA_11609 [Thraustotheca clavata])

HSP 1 Score: 65.5 bits (158), Expect = 7.000e-7
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0 
Query:  318 FVGAVFKLGLKCSSPKVLMDLM--PMTET-LTTEHIKSHLQKYRLHGNRSKDEFVEYFN 374
            FV AVF +GLK +SPK L+ LM  P T + LTTEH+KSHLQKYRL+ +RS+ EF+++F+
Sbjct:   77 FVAAVFDVGLKNASPKALLTLMGNPATSSGLTTEHLKSHLQKYRLNYDRSRVEFLKFFD 135
The following BLAST results are available for this feature:
BLAST of NO08G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM26518.17.300e-7381.66conserved unknown protein [Nannochloropsis gaditan... [more]
CBJ29351.11.900e-1263.16conserved unknown protein [Ectocarpus siliculosus][more]
EWM27574.19.400e-1248.68two-component response regulator arr12 [Nannochlor... [more]
CBJ25938.13.700e-864.29conserved unknown protein [Ectocarpus siliculosus][more]
OEU21412.16.300e-848.53hypothetical protein FRACYDRAFT_235035 [Fragilario... [more]
XP_002181659.12.400e-745.59predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX20002.12.400e-746.27hypothetical protein FisN_1Lh524 [Fistulifera sola... [more]
GAX14324.13.100e-746.27hypothetical protein FisN_1Hh524 [Fistulifera sola... [more]
XP_009836907.17.000e-757.63hypothetical protein H257_11609 [Aphanomyces astac... [more]
OQR81572.17.000e-759.32hypothetical protein THRCLA_11609 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009036NSK009036Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00160.1NO08G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581798gene_3337Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100398g5gene4009Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00160.1NO08G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00160 ID=NO08G00160|Name=NO08G00160|organism=Nannochloropsis oceanica|type=gene|length=4268bp
CAGACACAGGAAAGAGATACTTTTTTTCAGAAAACGAATATTCGGTCTCA
TGGTAGCTTTCCCCTTTATTCGAAGCTCTCAACGAAATCTGATGCGGCCA
TTGCGGGTGGTAGGTAAAAGCCCGGGGGGAATCTCCGAGTCTCTTCGTGC
GGTTTGTCGAGGTCGTATGCCTGTGCCCTGTCTCGAGCCCACACCACGTG
GTCCAAAAGGGCGGGGAATGCGTTAAAGCAGTGGTACCATATCCAAGACG
TCGTTGATGCCGCTAAGTGTCGTGTCTAATTGTAAGCGTCGTGGCTTGCC
TGGCCTTTTTCTTGTGCCAGTGTTTGCCATCGCTCGATTAACGTGCTTCA
ACGAAGTGGCGGCCGCAGATGCAGCAGCAGATGCAGGGCCTTGATTCACT
TGGCTCGATTATTCATTTTGTGCACTATTTTCTCAGCACAGGGTCTACCG
ACCCATGGATGCCTGGAACGACAACACTCTCAGCTATCTGGATGTGCTGC
GGGATGTCTACAGTTCTTTGTAAGTAGAAATGAGAGATAAATGGGAAGAG
GGAGCGGGCGATCAGCGTTGGTACGTACCCCAGAACGCTTGAGCGGCCAC
ACAACCAGCCAAAGCCCGGAGGGCCTATGTTTCCACAACCATCACATGCA
TTACATAGATCTCTATGACTATCTGACATCGATAGATGTGCAATATTTCC
TTCATATTTCCCACCGCAGGAGTTTCCCAGGTTTCCCAGCGACAGAGGGC
GTCGAAGATGCAGGTATGAATCTGGGCCTTGCACCCTATAAGTGTCTCTG
ATCTATCCCATCTTCCCCATGCCTATGCCCATGGACATAGAAGCGAAGTG
TCTAGTGCTATTGAGTTGGCTGGTCAGTCTTTTATCGGCACAAAACCTTC
CAGAGTGGAGGGGAGATCCATCTCTTTTTTGCCACCTCCCCTCCCCCGCG
AGCTTGAAGTGAACAGAAGCTGTTCTGAGCCGTCCTTTAGAATACCGAGG
CACAATTAGTGCGCAAATTACTCACACTATCACTCTACGCACCCCCTTTC
TCCTCAAACCTGCCCTGTGTGCACTCGAGCCCCAGATTCGTTGCCTCTTT
ATCTCCTCACTCGCTCTCTCTCCACCCTCGCTTAGATCCGGTGATGGCGG
GCATGACTGGCCAGCAGCAGGTGGGCAAGGAGGAGAGAAAGATGGGGAGA
GTATGGGAAGAAGCAAGTGGCTTCGAGACCGCCCAGCAGTACTCAGCGCT
GCACCATGAGCACAAAGCGGGGGAGGAAGGGGAGGGAGGGGAGTATATCG
GCGGTGATCGTGAAGGGGATGTGGACGAGGAAGAGAGCGAGACAGAGGTA
GGGAAGGGCGGGAAAAGCCCTCGAGCTCAGCATCGACGTCAGTACCGGAA
TCGGAAGTACCGGCGGCTGTCCCAGAACCCTTCCTCTGAGGTCTTGGACA
CGGTGATGAGCAGCAGCAACAGCAACTCCTCCCTCCTCCTCAGCAACGAT
ACCAGCAGCACCAACGGCCGCCGCAGCCGCAGCAACAGCATGGGGATGGT
AGGAGAGGAGGAAATTGAGGAAAAAGGAAGAGCGGCAACAGTCATGCCGG
TGGGTGGAGTGCATCATCCCGGTCGGGTGGGACTGGGGAAGGGGAAGCAG
TTTCTCGTCCGCCCTCCCCTATCCCCTGCCTCGAGCCCCAAGCACAGCAG
CAGCAGCAGTGGCACCAGCACCAGCAGCAATAGCCATAGCAAGTGCACTC
CCCATACCCGATCCAAGCGCGGCGGCAGCAGCACCAACAGCAACGGTAGT
GCCGCTGCTGCTTCTGCCTCCTCCTCCTCCGGTAGCACCACCAGAAACCG
ACGCCGCGCGGCCCTCAAGGCCGAGGAGGCCATCCACCGAGCCCAGGGCG
GGAGGGAGGGTACGAACGAGGGCGGGAGCGAGGAAGAGGAGGCAAACCGC
CGAAGCAGTAGAGGTGGTGGTGGCTGGCGTCGGAAGCCGGGCGATGACGA
GGACGAGGACGAGGACGAGGACGAGGACGGGGGGGAGGGGGAGCTTGACG
AGGCGTTGATGAATCTCCGTTTTCCCGCGCAGCACGAGACGGATTTTGTG
GGTGCCGTGTTTAAGCTGGGGCTGAAGTGCTCTTCGCCGAAGGTGTTGAT
GGACCTGATGCCCATGACGGAGACTCTGACGACAGAGCACATTAAGAGCC
ACCTGCAAAAATACCGGCTGCATGGAAATAGGAGCAAGGACGAGTTCGTG
GAGgtgagtcgagagggaagagagggggcacggggaaaaggcgtgtatgg
cagggtcgatacttggtgatggatgaaggtatgaagaggcgcctgtagaa
ggatcgtttgcagggtgcctgtgagggatgggggagggagggagggaggg
agagagggagggagggaggagcgattggcacctacgtcaacatctacctt
gatctcacccatgtcctcgccccacccttcttctgtcttgcccagTACTT
TAACGGTTACATGCGTGGACCGTTTGCAAGCTTCTGCGCCCGGCGCGAGT
GGGAGCACGAGCGCGGGTCCGAGGGAGCGACTGGGGGAGGGGTCGAAGGC
ATCCTCCCTCCTTTGTTTGCGCACGGCCACCGGCGACTTCCACTGCCCAT
GAGCGGCGGGAGTCGACAGCACCACTTGCAGCAGGTTCAGATGCTGACGg
taggtggcaaggggagggcgggagggagggaaggagggagagagagaggg
agtgtgcggtgttgacatgaaatgggctctcctcattcctctcttctttc
cctccctgccattcctcctttcctcccatctcctgagcattctcctctaa
gacatttctaactttaattattattgttataatatatatatatatatata
tatataaatatatatatatatatatatgtaaataattacatgctaaacaa
gatcaccatgcacttatccccctctctccctccctctctccccccctccc
tccctccctcagGGCCAACTGCTGCAGACACAGCTGGAGTTGCAGGCCCA
GGTGCAGCACTACATCACCAGCCAGGTCAACATCCAATCCGAGCTTGTCA
AGGACACAGTATCCTCCTCCATGGAAGTCATCAGCGGAGCGAGGGAGGGA
GGGAGGGAGGAAGGGCAGGAACGACAGTGCCAAGAGGAAGAGATGCTTCC
TCCCTTGGTTGTAGATGAGGAGGGGGGGGAGGGGAGGAGGAAGGGAGGGA
AAGAAGTTCTGCACTCTCCTTCCTCTGATAACCAGCTGTTGCCCTCGACG
GCCATGGCGGCCGCGGCAGCAGCGTCCATCAGGGGAGGAGGGGAGGGATG
GAGGGAGGGAGGGAGGGATGGAGGGAGAGGGCTCGAGGCCCTGGCAGCGG
AGGCGAGGATTCTGGAAGAGGCGTCAAGGGCTCGCCGGCAGCACCACCAG
GAGCAACAACAGCTGCATTATCAGCAACAAGATACATTGTCGTCGCTGGA
GGATGACGAGGATGACGAGGAGGACGAGGAGGACGAGGGAGGGAAGGAGG
GAGGATGGGGGGAAGACAAGTCATTCCAGTCGCGGCCTCGAACTGTAACA
GTGGTGGCTTTATGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGGGGC
CAAACTGGACGTGGAGGGTACTGAGGAGAGGTCGAGACTGACTGTAGTAT
ATGTGCCGGTGTCTGTCGTGTGATCGGATGGAGGGGAAATTGAATGCTAC
GAGTGGGAGGAGGAGGAGGAGGAGGAAAGGAGGGAGGGTGAGAAAGAAGG
GAATGAGGATATCATATGAGCCCAAGGTTGGTTTGATTAGGAAGACGGTA
CACATCGGTCACTCAGGAGATAGGTAGGAAGTCAGAGAAGGAGAGAAAAA
AGGTGGATCGATGTAGAGATCGCATGAAGAGTAGATCATGGGAAGAGGAG
GAGAAGAAGAAGAAATAGAAAGGAGGAAATATGGCACACAGGCACACAGA
AGAAAAAGAGTACCGGTCATCATGATATTTTCAAGCAAGAGATCAGACAT
GCGGTAGGGGGAGGGGTAGGAAGTGCAGAAGATGAAAGCCGGTATGGCGA
CACGTTTTGACAGTTTTGAGAGGCGCTCACACGCACACACACACACGCAC
ACACGCACGCACGCACACACACACACACACACACACAAGCAGGACTGATT
TTTCATAAAAAATAAAGAATGACAACGAAAGCCAGAATGAAGAGTAAAAG
AGGTATGGGCCAGTCCCA
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protein sequence of NO08G00160.1

>NO08G00160.1-protein ID=NO08G00160.1-protein|Name=NO08G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=639bp
MAGMTGQQQVGKEERKMGRVWEEASGFETAQQYSALHHEHKAGEEGEGGE
YIGGDREGDVDEEESETEVGKGGKSPRAQHRRQYRNRKYRRLSQNPSSEV
LDTVMSSSNSNSSLLLSNDTSSTNGRRSRSNSMGMVGEEEIEEKGRAATV
MPVGGVHHPGRVGLGKGKQFLVRPPLSPASSPKHSSSSSGTSTSSNSHSK
CTPHTRSKRGGSSTNSNGSAAAASASSSSGSTTRNRRRAALKAEEAIHRA
QGGREGTNEGGSEEEEANRRSSRGGGGWRRKPGDDEDEDEDEDEDGGEGE
LDEALMNLRFPAQHETDFVGAVFKLGLKCSSPKVLMDLMPMTETLTTEHI
KSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCARREWEHERGSEGATG
GGVEGILPPLFAHGHRRLPLPMSGGSRQHHLQQVQMLTGQLLQTQLELQA
QVQHYITSQVNIQSELVKDTVSSSMEVISGAREGGREEGQERQCQEEEML
PPLVVDEEGGEGRRKGGKEVLHSPSSDNQLLPSTAMAAAAAASIRGGGEG
WREGGRDGGRGLEALAAEARILEEASRARRQHHQEQQQLHYQQQDTLSSL
EDDEDDEEDEEDEGGKEGGWGEDKSFQSRPRTVTVVAL*
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Synonyms
Publications