NO08G00130, NO08G00130 (gene) Nannochloropsis oceanica

Overview
NameNO08G00130
Unique NameNO08G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4433
Alignment locationchr8:51672..56104 -

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Properties
Property NameValue
DescriptionSignal transduction histidine kinase, hybrid-type, ethylene sensor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:51672..56104 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G00130 vs. NCBI_GenBank
Match: WP_104521689.1 (PAS domain S-box protein [Rhodopila globiformis] >PPQ27977.1 hypothetical protein CCS01_25725 [Rhodopila globiformis])

HSP 1 Score: 64.7 bits (156), Expect = 8.200e-7
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:   10 AMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTGALFISFILLCGLTHLFNMLNL---PTNVILFTKWATAIVSVSTSLLLLHVIPEALSLP 106
            A + +D V A+AYF IPV + ++  RRR ++   P FW    LF +FILLCG THLF++L L      V    K ATA+VS+ T+++L  ++P+AL+LP
Sbjct:   27 AYAFSDGVTALAYFTIPVALGIFAHRRRDLV-FRPVFW----LFATFILLCGTTHLFDVLTLWIPAYGVQAVVKAATALVSIVTAVVLWPLLPQALALP 120
The following BLAST results are available for this feature:
BLAST of NO08G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
WP_104521689.18.200e-744.44PAS domain S-box protein [Rhodopila globiformis] >... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581773gene_3333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00130.3NO08G00130.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G00130.2NO08G00130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G00130.1NO08G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00130.3NO08G00130.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G00130.2NO08G00130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G00130.1NO08G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00130 ID=NO08G00130|Name=NO08G00130|organism=Nannochloropsis oceanica|type=gene|length=4433bp
TTCAAAAAAATGTTGATTTGCTGAATGACAATGACTCATTTGCTTTGCTA
AGTGACGCCTCCAACCTCCTCACCCCTCCTCCCCCCCTCATTCATATAAT
AGTACCATCCATACATTGCGCTCGGATGTTCAAATTCCAAATAAAGTTTG
CCACCACAATGATCATTCTTGTTTCTTACTCGCTTGCATCAGAGCTCCAA
GAAGAACAAGTGGAAAGAGGCGATAAGCGAGGAATTGTTATCTCTTTGAG
CGAGGCGAGTGGCGGCAAAACGACATGTCCAATGCCTGGGAACCACAAGA
CACACCATGACGAGCACGAGCGAGAATGTCCACAGATGAGGTCTATTATG
TTTACTAATTGTCTGCTTCCTCCCCGCGCCAATGCCATAAGTGACGAGAA
TATCATGATGTTGAGCAGCTTGTCTGTTGGTCTGTTTATGGGGTACCCGT
ACACCAGCACGCAGCTCCAGGAAGACCATCACGCGCTCTCTGCCGGAATT
CATCCTTATTTTCCTCATTCCGCATACAGCCTTTAACCCACCTCACGCAG
GCGTAGCGCAGCCAAGTGAATTCCGGTGCGTCACGAGCTGGAGGAGGAGC
GCAGCAGCACAAGGCACAAGCAAGAGCAGCGGCTTGTTTAGAAGCCATAG
TAGCACCAGCATCTTCTACGCTGCCTTTGGACATTTCTCCCTATCAAACG
AGTGGTAGTATTTTCAGAGAGACAAACCGATCACCGCGACAAAGGGGCCT
GCCAGTCTAATCACTCAAGGGCATTTACCTTGAACTGCTTCTTTGACGTC
CCATTACATCTCGCCTTGAGCGACCATGCGCATCGATGGCTCAGGCGTGA
GCGCCATGAGCACGGCCGACTTGGTCATTGCCATTGCCTACTTTTTCATT
CCCGTGGAGATTAACATGTACTTGCTGCGTCGTCGGTGCGTGCCTGTGGA
AGGGAGAGAAGGAGGGGGGGAGGGAGGGGAAGGAGGGCAAGCGTTCGGGC
GTGCCGAGAAAGGGTGTCGCCTGCTATATACACCCTTCCACCTATCTTAT
TGCTACTTTCATCCCTTTTCCTCTCTCATTACCCTCGGCAGGCACATGAT
GCACCTGCACCCCCGCTTCTGGTTCACCGGGGCGCTCTTCATCTCCTTCA
TCCTCCTCTGCGGCCTCACGCACCTCTTCAATATGCTCAACCTGCCCACT
AACGTCATCCTCTTCACCAAGTGGGCTACGGCCATCGTCTCCGTCAGCAC
CTCCTTGCTCCTCCTCCATGTCATCCCTGAGGCGCTCTCCCTTCCCCAGT
TCATAAAAGAATTGACCTTTGAGAACAAATCAATGAAGGATTTCCGAGGG
GTCATGGTAGCCGTGCGCCGCGACCTTAGGGAGGAGGCCATCATCGACAA
CGCCCGCCACAAGCTCCGACGTATCCTTCCTGCGCGGACCCTGATCGACA
TATCCACCGACGCCATTCCCCCCCACTTCCTCCACGCCCCTCGTGACGTC
CTCACCCTCCCTATCATGGGCGGTCTCTCCATGCACCTGCGACGGTCCCG
CGTAAACGAGGCCCAAGTCATGTGGCTCCACGACGTATGCCTGCAGATGA
AGCAAGCCCTCCAACAGGCCGCCCACCTCCGCAACAATTTCCAATCCAAC
ATGCAGCATCATCAGCCAGTAGGGGGACTTGACGGTGAACCTTGTCTGAC
CCAGTTGAACTCCTCCTCCTCCTCCTCCTCTTTGTATGTGACAGGAAAAG
GACGAGACGAAGGGTTAGAAATGCTGGGAGGGAGACACGTTGATAAAGGG
AGTGAGGAGGCATGCCGCACCCGCCTATACTCATCGACGACCTCGGTCCA
CAAGGTCGCGCCAACTAGCTGCATTACGTCCAAGGCAGCCTCCTCCGCCC
TCGCGCCATCCCTCCCTCCCTCCCCCCAGTCAGCTGTGTTTAAGGCACCG
TTTTTGGCCACTGCTGCTGCTGCTGCTGATGGTCCAGTCGCCCCTGTTTG
TTTCCATCGAAATTCCTCCAGCTCCTCCACGGCGTTGCCTGTGGCCGCTT
TGGGAGGAGAGGGCACCTTATATCCGCACTCCCACGGCCAGGAGGAGAAG
CAGCAGCAGCTCCAGCACCAACTCGACCAGCAACAGGAACGAAAGGATGA
CAGGGGTCCCCCTTTTGAGAAGGTGGACAGGGTGTGGGAGGCCGAGTGTG
CGCTGGCAAGGCTGAGGATTAAGTGCGCCGGAATCTTAAGTCGGGTGCTC
ACCTTGGTGGATTTCATGGATgtgagcagagcgggagagtaaaaaagggg
aggaaggcgaagaagggggactaaattggtggcgtaatagttgagcatca
gtcacagaactgctactcccattctttcatcccgccatgtacgtacgtat
ataactcacgttcacatctctctcttcctcccgcccatcttcactcgaca
tacagATAGAGTCCTTGACGCCATTTCAGAAGAAATGTATGGTCTTGATC
AAAGAGGCGGCTCAAGCAGACCTGGTATAGCTGTCGCAGCAGCAGTAGAT
ACATATGCATAGACGACACAGAGGGAATAAAGTTAGGTACAAAAAGACCT
GTGAAACAGAGCAGTAAAAAAAACTCTTAAAAAATGGACAGAGAAGCACA
TAAAATTATCCAGTGATGTTTTTAAATGTGCACCGTGATGAAAGAACATG
TGCATCGCCTCTATCAGGGAGGATGCTTGTATGAGTGTCTTTGCGCATGA
ATGCACGGCTGTATGCGTACGTTTGTGTACAAAAAGAAATAAAGTGATAG
AAAGAAGAAATACACGTGACTAAGAATAGGCGACCTTCACTTTGTTGGAA
AAGATTGATATGAACTTTGATCTCGGTATCTCCTTTTGTTAGAAACGTAA
GTACACATCTCTACCGCCCGAAAGTTGCACACTTTGCTGGGTTGAAGGTA
TGGGCGCTCTTCTTTCGTTTTCGTCTAGGGCTGGCCATGGTATACCATGG
TCGTGAATACCGCCTTATCGTTGATAAGGCACCGGGGTGAGCAAGCATCG
CTGGGTAGTGAGGAAAGACGAGAGGGCCCATTGGGTCGAGCAGCAGCAGT
AGCTCTGGGGCACAGTTGCGACATTTCGAAGAGGCGGGGAAGCCCTATTT
CCCCCCCTCCCCTACCAAGACGAAGGGCATAAGCATCGATGATGATGGCA
ACAATCAGCTGATTCGCGGCAAACAGCGGTGGCGGCAGTTGCTGTGTCAA
ATAAACGCACAACAGTGCACGGCGTCATTTGTTCCTTTGTAGCTTTCACG
GCGTTCAACGAGCTTGGAAAATACTGCATACTTTCTCGTTGTAGTGCATA
GTATATTCTCTGTGGCTTTCGCTTCCAAGCCGCAGCATTAGCACGAGTGT
CTTGCCGAAAGTGCGACCAATTTCCGCGCAACGGTCCGTGCCGTTAGGAG
GCTGGAGTGCGACCGCTACCGTTGCCCTGAAATCTTGAAATTATTACCTT
ATTTACGCAAATATTTCTACATATTTTCATAGACAATGCGTCAGTCAATT
TGATCTTGCACACTGACAATCTGATGATACCTGTCCAGGTTTGCTCTTCC
GGTAAGATAATCTTCTCACCTTCATCTATGCCCTCCCTCCTCCATTTGCG
GAGCACCTACTTAGGGCTTTCATGGCGCATAATGTTACTCTGTAACATTA
TGACATGCCTGCGGACACTCTCATCGTCCCAGAATGGGGGGGTGGATTAT
GGGGATGTGCTTCTTCAAAGTTGAGTAGACCTGTTGGGTGTGAAGTAGGT
GAGGGGGAGGAGGGAAAGGAAAGTTAGAGGAGGGGAAGGCGTCTTTTCTG
AGCATTTGAAAGCTGATAGGGACAGGCGGAGAGAGGAAGGGAAGGAAAGA
GAGATTCTTGCCTTGATCTGGACCATATTACTTTTTTTTTTGGTGGTTGG
GTGTGTAGCGTAGGCCTGTGCGGAGTGCGTGTAGGTGTGTAGTGAGGCGT
GTTAGCGGTGCGCACTGTGGCCTCTAGTATTCATTGGAAGATCTTTCAAC
GTTCTACCGGAAGTCCAGTACCGCCGCTTGCGCCCGAGGTTCTGAGCGGG
GCGGCCTGGCTGTGGGGCAGATACCGGAATACTTGTGGTGGTTACCTCGA
GGGCTGGAAGGCCGTCAATAATCTGGTTTGATGCATAGGGAGTGTGTCGT
ACAGGCCACGGGCCATCAAAATGATAAACAGGAAATGTCGCCTTGACGTC
TCTCGATGCCCCTTTGCCCCTTATGCGGTTAGGAGAGGGTTGGCGGATCG
AAGATGGAGCGTCTCAGAGGTCAAATTTGCTGGAAGAAAGAAAGATGAAG
TGTCACGCAGGTACAAAGGCGCACGTCAAAGAATAAAGAAAAAGAAAAAT
GTCAAGCACACATGTTTTTGGAAGAGGATAAAC
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protein sequence of NO08G00130.3

>NO08G00130.3-protein ID=NO08G00130.3-protein|Name=NO08G00130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRCVPVEGREGGGEG
GEGGQAFGRAEKGCRLLYTPFHLSYCYFHPFSSLITLGRHMMHLHPRFWF
TGALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVI
PEALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRI
LPARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMW
LHDVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSS
SSLYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCI
TSKAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSS
STALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKV
DRVWEAECALARLRIKCAGILSRVLTLVDFMDIESLTPFQKKCMVLIKEA
AQADLV*
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protein sequence of NO08G00130.2

>NO08G00130.2-protein ID=NO08G00130.2-protein|Name=NO08G00130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTG
ALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVIPE
ALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRILP
ARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMWLH
DVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSSSS
LYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCITS
KAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSSST
ALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKVDR
VWEAECALARLRIKCAGILSRVLTLVDFMDVSRAGE*
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protein sequence of NO08G00130.1

>NO08G00130.1-protein ID=NO08G00130.1-protein|Name=NO08G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTG
ALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVIPE
ALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRILP
ARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMWLH
DVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSSSS
LYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCITS
KAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSSST
ALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKVDR
VWEAECALARLRIKCAGILSRVLTLVDFMDIESLTPFQKKCMVLIKEAAQ
ADLV*
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Synonyms
Publications