NO07G04270, NO07G04270 (gene) Nannochloropsis oceanica

Overview
NameNO07G04270
Unique NameNO07G04270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length497
Alignment locationchr7:1200897..1201393 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1200897..1201393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 1.900e-33
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF ST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   74 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 151
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 1.100e-30
Identity = 71/77 (92.21%), Postives = 71/77 (92.21%), Query Frame = 0 
Query:   12 HDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            H   GDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF ST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   30 HQPVGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 106
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 6.100e-16
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:   22 RFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            RF     +  RRG       KGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   50 RFATNLWSSMRRGR------KGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 110
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM19988.1 (hypothetical protein Naga_102432g1 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 7.900e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            GKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAV+GVAGATA
Sbjct:    7 GKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATA 54
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM22525.1 (hypothetical protein Naga_101794g1 [Nannochloropsis gaditana] >EWM22526.1 hypothetical protein Naga_101794g1 [Nannochloropsis gaditana])

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-15
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0 
Query:   42 KGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            KGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:   22 KGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 68
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM19937.1 (hypothetical protein Naga_102907g1 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-15
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            GKGRVLRGGFSST HTGPGTS+GEELGKKWAT FQGIGAV+GVAGATA
Sbjct:    7 GKGRVLRGGFSSTAHTGPGTSNGEELGKKWATFFQGIGAVVGVAGATA 54
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-15
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATA 89
            GKGRVLRGGF ST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATA
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATA 54
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM19984.1 (hypothetical protein Naga_102461g1 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGK 43
            +LA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPG+
Sbjct:   82 LLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGE 123
[Close]
BLAST of NO07G04270 vs. NCBI_GenBank
Match: EWM19959.1 (hypothetical protein Naga_102684g1 [Nannochloropsis gaditana])

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGK 43
            MLA LLAAIINHDHQGD M RRFTAKAGAMARRGSTLPGPG+
Sbjct:   77 MLALLLAAIINHDHQGDKMPRRFTAKAGAMARRGSTLPGPGE 118
The following BLAST results are available for this feature:
BLAST of NO07G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
EWM20119.11.900e-3394.87hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
EWM20145.11.100e-3092.21hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20082.16.100e-1674.63hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM19988.17.900e-1693.75hypothetical protein Naga_102432g1 [Nannochloropsi... [more]
EWM22525.11.400e-1595.74hypothetical protein Naga_101794g1 [Nannochloropsi... [more]
EWM19937.11.800e-1591.67hypothetical protein Naga_102907g1 [Nannochloropsi... [more]
EWM20146.11.800e-1593.75hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM19984.11.200e-1190.48hypothetical protein Naga_102461g1 [Nannochloropsi... [more]
EWM19959.13.500e-1190.48hypothetical protein Naga_102684g1 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04270.1NO07G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|339302gene_2780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04270.1NO07G04270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04270 ID=NO07G04270|Name=NO07G04270|organism=Nannochloropsis oceanica|type=gene|length=497bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGgtgaggtggcgtgtgtgatgcatttagga
agaactcgggcttgttgatggggtgggagtgcgcgttcagtgcacgcgac
cgcagtctggccgaggcatgttgattccccctttgtctgcgtgtctgtgt
cgtttgcgttgcaatctttgttatgcggacaagggcccgcatcaaggtgt
tcacgcacacgcacatccatacacacccaacagGAAAGGGACGCGTGCTG
CGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGACAAGGCCCTTGTGTTGTGA
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protein sequence of NO07G04270.1

>NO07G04270.1-protein ID=NO07G04270.1-protein|Name=NO07G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATADKALVL*
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Synonyms
Publications