NO07G04120, NO07G04120 (gene) Nannochloropsis oceanica

Overview
NameNO07G04120
Unique NameNO07G04120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length721
Alignment locationchr7:1151194..1151914 -

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Properties
Property NameValue
DescriptionER membrane protein complex subunit 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1151194..1151914 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0072546ER membrane protein complex
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR008504Emc6
IPR029008Rab5IP_fam
Homology
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: EWM26953.1 (hypothetical protein Naga_100304g4 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 9.400e-44
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0 
Query:    1 MMDPTMMQAQMAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            MMDP+MMQAQMAA   + ES DL+SRSQL  PA+ HN Q+VEHVRGLMSIFAGAAAGVLG TGI+QGA  F++F+ LTSLGLL K+KLTG +S Y PTKWYAFL+A  ANH+LSFLLFWT+GYTLIHIY
Sbjct:    1 MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
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BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_008875320.1 (hypothetical protein H310_10663 [Aphanomyces invadans] >ETV96009.1 hypothetical protein H310_10663 [Aphanomyces invadans])

HSP 1 Score: 84.3 bits (207), Expect = 3.000e-13
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 0 
Query:   21 ADLASRSQLSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            A   S+   S+  +  N  VVE  +  M + +G+ AGV+G T   QG    +  Y++TS+ LL KMK   D+ TYF  KWY+FL  G+  HV+SF+LFWT+GY ++HIY
Sbjct:    3 AQQESQEFFSVENVQKNEGVVEFTQTAMCVVSGSMAGVIGLTAF-QGFAFMVALYVVTSVALLAKMKF--DVETYFNMKWYSFLFYGIGGHVVSFILFWTLGYGMVHIY 108
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_009830729.1 (hypothetical protein H257_07016 [Aphanomyces astaci] >ETV79793.1 hypothetical protein H257_07016 [Aphanomyces astaci])

HSP 1 Score: 82.8 bits (203), Expect = 8.600e-13
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:   30 SMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            S+  +  N  VVE  +  M + AG+ AGV+G T    G +  +V Y+ TS+ LL KMK   D+ TYF  KWY+FL  G+  H +SF+LFWT+GY ++HIY
Sbjct:   12 SVENVQKNEGVVEFAQTAMCVVAGSMAGVIGLTAF-HGFVFMVVLYVFTSVALLAKMKF--DVETYFNMKWYSFLFYGIGGHFVSFVLFWTLGYGMVHIY 108
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BLAST of NO07G04120 vs. NCBI_GenBank
Match: OQR94047.1 (hypothetical protein ACHHYP_01891 [Achlya hypogyna])

HSP 1 Score: 80.5 bits (197), Expect = 4.300e-12
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 0 
Query:   11 MAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            M APAP  E          SM  +  N  VVE     MS+ +G+ AGV+G TG VQG +  +V YLLTS  LL KM L  D++ YF     +FL  G+  H++SF+LFWT+ Y L+HIY
Sbjct:    1 MEAPAPGTEF--------FSMENMAKNEGVVEFTHTAMSVVSGSLAGVMGLTG-VQGFVCMVVLYLLTSGALLAKMGL--DVAPYFNMNVASFLFHGIGGHLVSFILFWTLAYGLVHIY 108
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: OQS04022.1 (hypothetical protein THRCLA_20997 [Thraustotheca clavata])

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-10
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 0 
Query:   21 ADLASRSQLSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            A  A     SM  +  N    E  R  MS+ +G+ AGV+G TG+ QG    +V Y LTS  LL KMK+  D S YF     +F  AG+  H++SF+LFWT+ Y L+HIY
Sbjct:    3 ATAAGTEFFSMENMAKNEAAAEFTRTAMSVVSGSIAGVMGLTGL-QGFGCMIVLYTLTSGALLAKMKM--DCSPYFNMNALSFTFAGIGGHLVSFILFWTLAYGLVHIY 108
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_012206322.1 (hypothetical protein SPRG_11881 [Saprolegnia parasitica CBS 223.65] >XP_012208540.1 hypothetical protein SPRG_13310 [Saprolegnia parasitica CBS 223.65] >KDO20728.1 hypothetical protein SPRG_13310 [Saprolegnia parasitica CBS 223.65] >KDO23034.1 hypothetical protein SPRG_11881 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-9
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 0 
Query:   30 SMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            SM  +  N  VVE     MS+ +G+ AGV+G TG+ QG    ++ YL TS  LL KM    D S YF     +FL  G+  H++SF+LFWT+ Y L+HIY
Sbjct:   13 SMENMAKNEAVVEFTHTAMSVVSGSLAGVMGLTGL-QGFGCMILLYLATSGALLAKM--GADCSPYFNMNVVSFLFYGIGGHLVSFILFWTLAYGLVHIY 109
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_009039009.1 (hypothetical protein AURANDRAFT_29215 [Aureococcus anophagefferens] >EGB06438.1 hypothetical protein AURANDRAFT_29215 [Aureococcus anophagefferens])

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 0 
Query:   29 LSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            L+  A+ HN   ++  R  ++IFAG  AG+LG T  V+GAL F+  Y+  SL LL  MK  GD   Y        ++ GV  + LSF+LFWT+ Y L+HIY
Sbjct:    2 LNREAMMHNMSAIDGCRSYLTIFAGVGAGILGLTS-VRGALGFMASYVAISLALLVAMK--GDSMAYTNEAIPNHVIGGVGKYGLSFVLFWTLSYALVHIY 99
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_008893615.1 (hypothetical protein PPTG_01972 [Phytophthora parasitica INRA-310] >ETI44750.1 hypothetical protein F443_10575 [Phytophthora parasitica P1569] >ETK84737.1 hypothetical protein L915_10334 [Phytophthora parasitica] >ETL38167.1 hypothetical protein L916_10234 [Phytophthora parasitica] >ETL91273.1 hypothetical protein L917_10168 [Phytophthora parasitica] >ETM44594.1 hypothetical protein L914_10193 [Phytophthora parasitica] >ETN21897.1 hypothetical protein PPTG_01972 [Phytophthora parasitica INRA-310] >ETO73379.1 hypothetical protein F444_10675 [Phytophthora parasitica P1976] >ETP14560.1 hypothetical protein F441_10517 [Phytophthora parasitica CJ01A1] >ETP42642.1 hypothetical protein F442_10470 [Phytophthora parasitica P10297] >KUF90521.1 hypothetical protein AM588_10002745 [Phytophthora nicotianae])

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   30 SMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            SM  + +N + VE+V   M + AG  AG+ G TG+ QG  AFL    +++   ++  KL  D+  YF T  ++F+ AGV +  LSF+LFWT+ Y L+HIY
Sbjct:   13 SMENMKNNEKAVEYVHTSMCVIAGCIAGITGMTGL-QG-FAFLAAAYVSTAASIWVFKLGMDVKVYFNTNAFSFIFAGVLSQALSFILFWTLSYGLVHIY 110
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: XP_002899154.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62518.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:   30 SMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            SM  + +N + VE+V   M + AG  AG+ G TG+ QG +     Y+ T+   ++ +KL  D+  YF T  ++F+ AGV +  LSF+LFWT+ Y L+HIY
Sbjct:   13 SMENMKNNEKAVEYVHTSMCVIAGCIAGITGMTGL-QGFVFLAAAYVFTAAS-IWVVKLGMDVKVYFNTNAFSFIFAGVMSQALSFILFWTLSYGLVHIY 110
[Close]
BLAST of NO07G04120 vs. NCBI_GenBank
Match: OWZ02459.1 (hypothetical protein PHMEG_00025974 [Phytophthora megakarya])

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:   30 SMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            SM  + +N + VE+V   M + AG  AG+ G TG+ QG       Y+ T++  L+  KL  D+  YF T  ++F+ AGV +  LSF+LFWT+ Y L+HIY
Sbjct:   13 SMENMKNNEKAVEYVHTSMCVIAGCIAGITGMTGL-QGFAFLAAAYVFTAVA-LWIFKLGMDVKVYFNTNAFSFIFAGVMSQALSFILFWTLSYGLVHIY 110
The following BLAST results are available for this feature:
BLAST of NO07G04120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
EWM26953.19.400e-4474.42hypothetical protein Naga_100304g4 [Nannochloropsi... [more]
XP_008875320.13.000e-1343.12hypothetical protein H310_10663 [Aphanomyces invad... [more]
XP_009830729.18.600e-1345.00hypothetical protein H257_07016 [Aphanomyces astac... [more]
OQR94047.14.300e-1244.54hypothetical protein ACHHYP_01891 [Achlya hypogyna... [more]
OQS04022.11.100e-1043.12hypothetical protein THRCLA_20997 [Thraustotheca c... [more]
XP_012206322.11.200e-944.00hypothetical protein SPRG_11881 [Saprolegnia paras... [more]
XP_009039009.12.000e-942.57hypothetical protein AURANDRAFT_29215 [Aureococcus... [more]
XP_008893615.12.000e-941.00hypothetical protein PPTG_01972 [Phytophthora para... [more]
XP_002899154.12.000e-940.00conserved hypothetical protein [Phytophthora infes... [more]
OWZ02459.12.000e-941.00hypothetical protein PHMEG_00025974 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04120.1NO07G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581425gene_2759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04120.1NO07G04120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04120 ID=NO07G04120|Name=NO07G04120|organism=Nannochloropsis oceanica|type=gene|length=721bp
AGGCCATCACTAGTCGGGACAAGCAACAGACCACCATGATGGACCCTACA
ATGATGCAGGCTCAGATGGCTGCCCCTGCTCCCAGCATCGAGTCTGCTGA
CCTCGCCAGCCGCTCGCAATTGTCCATGCCTGCCCTTACACACAACAACC
AGGTTGTGGAGCACGTCCGAGGGTTGATGTCCATTTTTGCCGGGGCAGCG
GCGGGCGTGTTGGGGGCAACGGGCATCGTGCAGgtacgagaatgagggag
gggaggactggaaagaggacacctcgcataaggcagaggtcacccttgca
tttatccgtctccctgcccatctcccgtgcaccttcctactgcatctgcc
gttctccatgataccactgaccttgtcaactcaaccctccccaatcacac
agGGCGCGCTGGCCTTTCTCGTCTTCTACCTCCTCACGTCCCTGGGCCTG
CTATTCAAAATGAAATTGACTGGAGACATCTCCACGTATTTTCCTACCAA
ATGGTACGCATTTTTGCTGGCTGGCGTGGCGAATCATGTCTTGTCGTTTT
TACTGTTCTGGACCGTGGGTTACACTCTAATCCATATTTACTAGGAGGGA
GAGGGAAGGGACCCGAGGGGATGGTTGAAATGGCACAAACAAAATGAATC
AAATGCAATTCAAACGACGTATATCGAGCATGTCTTGGAATACCAATGAC
AAACCTGTATACGAAAGGAGG
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protein sequence of NO07G04120.1

>NO07G04120.1-protein ID=NO07G04120.1-protein|Name=NO07G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MMDPTMMQAQMAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSI
FAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKW
YAFLLAGVANHVLSFLLFWTVGYTLIHIY*
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Synonyms
Publications