NO07G04120.1, NO07G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04120.1
Unique NameNO07G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length552
Alignment locationchr7:1151194..1151914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1151194..1151914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04120.1 vs.
Match: EWM26953.1 (hypothetical protein Naga_100304g4 [Nannochloropsis gaditana])

HSP 1 Score: 185.7 bits (470), Expect = 9.400e-44
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0 
Query:    1 MMDPTMMQAQMAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSIFAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKWYAFLLAGVANHVLSFLLFWTVGYTLIHIY 130
            MMDP+MMQAQMAA   + ES DL+SRSQL  PA+ HN Q+VEHVRGLMSIFAGAAAGVLG TGI+QGA  F++F+ LTSLGLL K+KLTG +S Y PTKWYAFL+A  ANH+LSFLLFWT+GYTLIHIY
Sbjct:    1 MMDPSMMQAQMAASTSNPESNDLSSRSQLFSPAVAHNAQIVEHVRGLMSIFAGAAAGVLGVTGIIQGACVFIIFHTLTSLGLLTKIKLTGKVSNYLPTKWYAFLVADAANHLLSFLLFWTMGYTLIHIY 129
The following BLAST results are available for this feature:
BLAST of NO07G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26953.19.400e-4474.42hypothetical protein Naga_100304g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04120NO07G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04120.1NO07G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04120.1.cds1NO07G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04120.1.cds2NO07G04120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04120.1 ID=NO07G04120.1|Name=NO07G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
AGGCCATCACTAGTCGGGACAAGCAACAGACCACCATGATGGACCCTACA
ATGATGCAGGCTCAGATGGCTGCCCCTGCTCCCAGCATCGAGTCTGCTGA
CCTCGCCAGCCGCTCGCAATTGTCCATGCCTGCCCTTACACACAACAACC
AGGTTGTGGAGCACGTCCGAGGGTTGATGTCCATTTTTGCCGGGGCAGCG
GCGGGCGTGTTGGGGGCAACGGGCATCGTGCAGGGCGCGCTGGCCTTTCT
CGTCTTCTACCTCCTCACGTCCCTGGGCCTGCTATTCAAAATGAAATTGA
CTGGAGACATCTCCACGTATTTTCCTACCAAATGGTACGCATTTTTGCTG
GCTGGCGTGGCGAATCATGTCTTGTCGTTTTTACTGTTCTGGACCGTGGG
TTACACTCTAATCCATATTTACTAGGAGGGAGAGGGAAGGGACCCGAGGG
GATGGTTGAAATGGCACAAACAAAATGAATCAAATGCAATTCAAACGACG
TATATCGAGCATGTCTTGGAATACCAATGACAAACCTGTATACGAAAGGA
GG
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protein sequence of NO07G04120.1

>NO07G04120.1-protein ID=NO07G04120.1-protein|Name=NO07G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MMDPTMMQAQMAAPAPSIESADLASRSQLSMPALTHNNQVVEHVRGLMSI
FAGAAAGVLGATGIVQGALAFLVFYLLTSLGLLFKMKLTGDISTYFPTKW
YAFLLAGVANHVLSFLLFWTVGYTLIHIY*
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mRNA from alignment at chr7:1151194..1151914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04120.1 ID=NO07G04120.1|Name=NO07G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=721bp|location=Sequence derived from alignment at chr7:1151194..1151914- (Nannochloropsis oceanica)
AGGCCATCACTAGTCGGGACAAGCAACAGACCACCATGATGGACCCTACA
ATGATGCAGGCTCAGATGGCTGCCCCTGCTCCCAGCATCGAGTCTGCTGA
CCTCGCCAGCCGCTCGCAATTGTCCATGCCTGCCCTTACACACAACAACC
AGGTTGTGGAGCACGTCCGAGGGTTGATGTCCATTTTTGCCGGGGCAGCG
GCGGGCGTGTTGGGGGCAACGGGCATCGTGCAGGTACGAGAATGAGGGAG
GGGAGGACTGGAAAGAGGACACCTCGCATAAGGCAGAGGTCACCCTTGCA
TTTATCCGTCTCCCTGCCCATCTCCCGTGCACCTTCCTACTGCATCTGCC
GTTCTCCATGATACCACTGACCTTGTCAACTCAACCCTCCCCAATCACAC
AGGGCGCGCTGGCCTTTCTCGTCTTCTACCTCCTCACGTCCCTGGGCCTG
CTATTCAAAATGAAATTGACTGGAGACATCTCCACGTATTTTCCTACCAA
ATGGTACGCATTTTTGCTGGCTGGCGTGGCGAATCATGTCTTGTCGTTTT
TACTGTTCTGGACCGTGGGTTACACTCTAATCCATATTTACTAGGAGGGA
GAGGGAAGGGACCCGAGGGGATGGTTGAAATGGCACAAACAAAATGAATC
AAATGCAATTCAAACGACGTATATCGAGCATGTCTTGGAATACCAATGAC
AAACCTGTATACGAAAGGAGG
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Coding sequence (CDS) from alignment at chr7:1151194..1151914-

>NO07G04120.1 ID=NO07G04120.1|Name=NO07G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr7:1151194..1151914- (Nannochloropsis oceanica)
ATGATGGACCCTACAATGATGCAGGCTCAGATGGCTGCCCCTGCTCCCAG
CATCGAGTCTGCTGACCTCGCCAGCCGCTCGCAATTGTCCATGCCTGCCC
TTACACACAACAACCAGGTTGTGGAGCACGTCCGAGGGTTGATGTCCATT
TTTGCCGGGGCAGCGGCGGGCGTGTTGGGGGCAACGGGCATCGTGCAGGG
CGCGCTGGCCTTTCTCGTCTTCTACCTCCTCACGTCCCTGGGCCTGCTAT
TCAAAATGAAATTGACTGGAGACATCTCCACGTATTTTCCTACCAAATGG
TACGCATTTTTGCTGGCTGGCGTGGCGAATCATGTCTTGTCGTTTTTACT
GTTCTGGACCGTGGGTTACACTCTAATCCATATTTACTAG
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Synonyms
Publications