NO07G04010, NO07G04010 (gene) Nannochloropsis oceanica

Overview
NameNO07G04010
Unique NameNO07G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4660
Alignment locationchr7:1114921..1119580 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1114921..1119580 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G04010 vs. NCBI_GenBank
Match: XP_012199074.1 (hypothetical protein SPRG_19824 [Saprolegnia parasitica CBS 223.65] >KDO30275.1 hypothetical protein SPRG_19824 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.4 bits (189), Expect = 2.300e-10
Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 0
Query:  185 VEFRPKARVPII-YTKHISGLEVDIRVAPPDHAAIS--LLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFSFLEPLTKKQHGGGKRPFTFSFLPSLPSLPI----DLGPAFRYADLRHLFHRAAVSLQDAEK 349
            V  R +A+VPII    H+S LEVDI +   D  ++S  +++  +A +P F PV   LK  LHQ  ++KPF+GGLGSY+LY+++G  I      +  +A  VL  F  +FS          G G+   T      +P   +    +    FR  +   LF  AA +L+ A K
Sbjct:  277 VHVRGRAKVPIINLVHHVSKLEVDISMG-VDKTSVSDQVIQWFAATYPVFNPVIVLLKEFLHQSGLNKPFEGGLGSYRLYVMVGHVINIV--DEPSNAWRVLNLFFEYFS----------GAGRFQTTTVLRLQIPRTNLRCEAEFKSIFRLRECNTLFALAAETLRSAIK 434          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: GAX19474.1 (hypothetical protein FisN_19Hh049 [Fistulifera solaris])

HSP 1 Score: 75.5 bits (184), Expect = 8.600e-10
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0
Query:  185 VEFRPKARVPIIYTKHISGLEVDIRVAPPDHAAIS-LLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFI-KYYYKGDRDDAGAVLLAFLLHF 291
            V F  KARVPI+      G+EVD+ +   +    S    + S ++  FA V   LK LLHQ ++D P+ GGLGSYKLY+L+   I ++   G +D+ G VL++F   F
Sbjct:  419 VTFITKARVPILKMDTTLGVEVDVAIGGHNGTDTSQFAAKQSELYKSFATVVLFLKALLHQHRLDVPYTGGLGSYKLYVLVAYHIQQHLLAGGQDEPGEVLMSFFFRF 526          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: XP_008619329.1 (hypothetical protein SDRG_14947 [Saprolegnia diclina VS20] >EQC27230.1 hypothetical protein SDRG_14947 [Saprolegnia diclina VS20])

HSP 1 Score: 74.3 bits (181), Expect = 1.900e-9
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 0
Query:  185 VEFRPKARVPII-YTKHISGLEVDIRVAPPDHAAIS--LLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFS 292
            +  R +A+VPII    H+S LEVDI +   D  ++S  ++R  +A +P F PV   LK  LHQ  ++KPF+GGLGSY+LY+++G  I      +  +A  VL  F  ++S
Sbjct:  280 IHVRGRAKVPIINLVHHVSKLEVDISMG-VDKTSVSDQVIRWFAATYPVFNPVIVLLKEFLHQSGLNKPFEGGLGSYRLYVMVGHVINVV--DEPSNAWRVLNLFFEYYS 386          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: OQR95256.1 (hypothetical protein ACHHYP_00161 [Achlya hypogyna])

HSP 1 Score: 74.3 bits (181), Expect = 1.900e-9
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 0
Query:  185 VEFRPKARVPIIYTKH-ISGLEVDIRVAPPDHAAIS--LLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFS 292
            V+ R +A+VPII   H +S LEVDI +   D  ++S  ++   +A +P F PV   LK  LHQ  + KPF+GG+GSY+LY+++G  I      +  +A  VL  F  HFS
Sbjct:  297 VDVRGRAKVPIINLVHFVSRLEVDISMG-VDKTSVSDQVIAWYAATYPVFNPVVVLLKEFLHQSGLSKPFEGGIGSYRLYVMVGHVINLV--DEPSNAWRVLNLFFEHFS 403          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: XP_008866029.1 (hypothetical protein H310_03799 [Aphanomyces invadans] >ETW04591.1 hypothetical protein H310_03799 [Aphanomyces invadans])

HSP 1 Score: 73.9 bits (180), Expect = 2.500e-9
Identity = 53/177 (29.94%), Postives = 83/177 (46.89%), Query Frame = 0
Query:  174 RLIEEAHAFIDVEFRPKARVPIIYTKH-ISGLEVDIRV-----APPDHAAISLLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFSFLEPLTKKQHGGGKRPFTFSFLPSLPSLPIDLGPAFRYADLRHLFHRAAVSLQ 345
            R + +AH    +E R  A+VPII   H  S +EVD+ V     +P D     ++   +A HP F  +   LK  L+Q  ++KP++GG+GS++LY ++   +       RD A  +LL F   F   +    +     + P      P L    ++    FR  D  +LFH+A   LQ
Sbjct:  296 RALRQAHPSFSIEVRRLAKVPIINVIHRTSNIEVDVSVGMEKPSPGD----QIVAWYAAHHPEFNTLVVLLKEFLYQNGINKPYEGGIGSFRLYCMVTHVVA--ASNPRDGAATLLLRFFERFGCAKTFNNRTVLRLRLP---EHDPPL-KCDVEFTSIFRLRDCNYLFHQAFERLQ 462          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: XP_009837214.1 (hypothetical protein H257_11854 [Aphanomyces astaci] >ETV73339.1 hypothetical protein H257_11854 [Aphanomyces astaci])

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-7
Identity = 51/181 (28.18%), Postives = 80/181 (44.20%), Query Frame = 0
Query:  174 RLIEEAHAFIDVEFRPKARVPII-YTKHISGLEVDIRVAPPDHA-AISLLRQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFSFLEPLTKKQHGGGKRPFTFSFLPSLPSL--PIDLGPAFRYADLRHLFHRAAVSLQDAEKHR 351
            R + +AH    VE R  A+VPII      S +EVD+ +   +      ++   +A HP F  +   LK  L+Q  ++KP++GG+GS++LY ++   +    + +R    A+LL F  HF         Q    +           P L   ++    FR  D   LF  A+  LQD    R
Sbjct:  304 RSLRQAHPSFQVEVRRLAKVPIINVVDPTSKIEVDVSLGMENPTPGDRIVAWYAANHPAFNILVVLLKEFLYQNAINKPYEGGIGSFRLYCMVTHVLATTPRKERGAPAALLLRFFQHFGC------SQKFNNRTVLKLDLPHHDPPLRCEVEFQSIFRIRDCNVLFGEASKRLQDGMNAR 478          
BLAST of NO07G04010 vs. NCBI_GenBank
Match: EJK75281.1 (hypothetical protein THAOC_02999 [Thalassiosira oceanica])

HSP 1 Score: 67.4 bits (163), Expect = 2.300e-7
Identity = 67/239 (28.03%), Postives = 101/239 (42.26%), Query Frame = 0
Query:  185 VEFRPKARVPIIYTKHISGLEVDIRVAPPD-------HAAISLL---------------RQLSAMHPCFAPVATALKVLLHQGKMDKPFDGGLGSYKLYLLLGKFI-KYYYKGDRDDAGAVLLAFLLHFSFL--EPLTKKQHGGGKRPFTFSFLPSLPSLPIDLGPAFRYADLRHLFHRAAVSLQDAEKHRSLXXXXXXXXXXXXXXKPARAVLSRLSFMIDGRECARMREGAREGLVR 399
            +E R KARVPII    I G E DI V   +       ++ IS L               +  +A    F P+   +K+L+ Q  +DKPF GGLGS+KLY+L+   I K+  +G RD    +L + L  +     + L        KR  + +   ++     DL P F+      LF+   + L +                     +  R+   RLSF+    +C R+RE ARE  +R
Sbjct:  554 IECRSKARVPIINCSTICGFEGDICVGGHNGETFMISYSIISSLTAFLDVAGTDTSMYAQSQAARFDSFGPIVLIMKILMSQQNLDKPFIGGLGSFKLYVLVAHHIEKHIKQGGRDRPSEILFSLLYRYGCKKNDKLATDLLSLQKRGSSIACDKAI----CDLVPVFKLEQCVALFNECHLRLSE---------------------RLRRSSQQRLSFLSSFIDCHRLRE-ARECSMR 766          
The following BLAST results are available for this feature:
BLAST of NO07G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_012199074.12.300e-1033.92hypothetical protein SPRG_19824 [Saprolegnia paras... [more]
GAX19474.18.600e-1039.81hypothetical protein FisN_19Hh049 [Fistulifera sol... [more]
XP_008619329.11.900e-940.00hypothetical protein SDRG_14947 [Saprolegnia dicli... [more]
OQR95256.11.900e-940.91hypothetical protein ACHHYP_00161 [Achlya hypogyna... [more]
XP_008866029.12.500e-929.94hypothetical protein H310_03799 [Aphanomyces invad... [more]
XP_009837214.11.100e-728.18hypothetical protein H257_11854 [Aphanomyces astac... [more]
EJK75281.12.300e-728.03hypothetical protein THAOC_02999 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000441NSK000441Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04010.1NO07G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04010.1NO07G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04010 ID=NO07G04010|Name=NO07G04010|organism=Nannochloropsis oceanica|type=gene|length=4660bp
CAGGTTGGCGGGCCACAACCGAAAAATGGGCAAGGCGGCCTCCTTCAACC
GTAAGGGCGGTGGCGATGGTGGTGGCGGCGGCGGCGGCGGAGGTCGATAC
TTCGATCACGGCGGTGGTGGTGGCGGTGGCAGCGGCGGTGGGCCGAAGCG
CTATgtacgtacctcctctcctccctcctcttcctctccttatacgctcc
gtcgtccctccctctccctttcggacaaagctttcaatttccctacgagc
tgtgtcaggatgaactatgagcccccgtgcaatggcatgccaatccccac
ctccacacttagccccgcttacctaccccctccgtcctcccctccccacc
ctacacctagTATACCCAGCGCCCCCCAAGACAGCACTACCCTATCTCGG
CCGGGCAGCAAGCGAAGAAGAAGGCAGATTTTCGTAAGCGAGACTATAAC
AGTCACAGCAACAATGGCAACAATTACGCTTACCGACAGAGGGATGGTCG
CTTTCTGCCACCTGTGAAGACGCACCAGAAGCACGGCAATCTGTTTGATG
TGATGCCAGCAGGGATGAAACGACTCAAGAAAAGCGAGAAGCGCGTGGGG
GCAGCATTAATAAAGGCATTGACACCGGgtgagatggatggagaggaggg
agggagggaggcaaggggcggggagagggagaaaggcagggtctcattcg
tcctatccactcccaggaaaggtggcatccggtgccggtacgcgtcccct
cctcttcccacaacatcacactcatatccctcacatcccccatcccatct
gcagCCCTTCCACCCGACCCCCCCCACCTTGGAGCCAAATCGACAAGCGC
CTGGGCCCAGATCCTCTGGTGGTGGATGAATGCCCGTGGCTTGCCTCCCC
ACTCCCCCTCCCTCCCTCTCTCCCTGCTCAGGCCACCGACGCCGACCCTC
CCTCCCTCCACGACGAATTGCTCGCTTTCCAGAGATACGTCTCTTTAACC
CCGACAGAGATGACAGGAAGAGCAGCGGTTGTTGGCTCGCTCCAACGCGT
GATCAAGgtatgcctacccctccctccttccctccctccttccctccctc
cttccctccctccctccctctttccactaacccttccctccctctttcct
ttcctctcttcctccctctctcctacctcgcgtcctagAGTCACTGGCCT
GAGGCTCAAATTGCCACTTTTGGGAGCACGGCGGCGTCGCTCGCTACATT
TTTAAGTGACGTTGATGTAACGGTCTCGGGCTTTCGGGAAAGCAAGCCGA
ATAAGGGGGGTAGCAAGGGGAGGAGGGATGGGGATAAGGAGGGGGAGGTA
GTTGTGGTGGCGAATGGTAGTGAGGAGAAAAAGAAGAGTGAACGGAAGGA
GGAGGCGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGGAGAGGAAG
AGGAAGAGGAGAGGGGGTGGGGAACCGCGGCGGATGGAGATGAAGAGGAA
GCAGAGGGAGAGGAGGAGGAGGAGGAGGAGGAAGACTTTGCCTTCAATAC
TCTTGTGGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGGCGGAGGGT
TTAATACAACCGTGATGAGTAGGGATATCCAGCGTCGgtgagtacaatat
ggtggaagtgggggggctttctccctctcccgtttctccttcctccttcc
tcctccttctcctcctcctcctccttcttcttcttcttttcctcctcctt
ctccttgcctgggtcatttttctccatccatcttcatgaccgagcttgac
gaagacgcaccagtagaccaacgcctccctccctccctccctccctccct
ccctcctcccttctttccagAGACCTCCAAGTCCTCTACCCCCGCCTGAT
AGAGGAAGCGCACGCCTTCATCGACGTTGAGTTTAGGCCCAAGGCCCGCG
TACCTATCATCTATACCAAGCACATCAGTGGGgtagggaggaaggaaggg
agggagggagggagggaggggaggagggagggaggtatgatagaccggca
cttgaggaaacgcccttgctcaccttccttctttcccttcctccttccct
tcctccttgtgtccctatagTTGGAGGTGGACATACGCGTCGCCCCTCCA
GATCACGCGGCCATCTCCCTCTTGCGCCAGCTGTCGGCCATGCACCCGTG
CTTCGCCCCTGTCGCAACGGCTCTCAAAgtatggaccctccctccctccc
tccctccctccctccctccctccctccctccctacccacctcccccctac
ccccctcctttctccccccccttcactccctccctccctccaaccccttc
ctccctccaactccctcctactccctccctccctccctccctcagGTCCT
CCTCCACCAGGGGAAGATGGACAAACCATTCGACGGCGGCCTGGGCAGTT
ACAAGCTCTACCTCCTCCTGGGTAAATTTATCAAATACTACTACAAAGGA
GACAGGGATGACGCGGGGGCTGTGTTGCTGgtaacaagggagggagggag
agggggagggagggaaagactgtgtttcttctacctctatttcaagctcc
tttcccccgtacattcttaccccgccctccctccctcctttcctccctcc
aacctgtcagGCCTTCCTCCTCCATTTCTCCTTCTTGGAGCCTCTCACTA
AGAAGCAACACGGGGGGGGCAAACGTCCCTTTACCTTCTCCTTCCTCCCC
TCCCTTCCCTCCCTCCCCATCGACCTCGGTCCCGCCTTCCGCTATGCCGA
CCTCCGTCACCTCTTCCACCGTGCTGCTGTCTCCCTCCAGGATGCCGAGA
AACACCGCTCACTAACTTCCTCTTCTTCCTCCTCGTCCTCGAAGAAAAAA
GGCGCGAAACCCGCCAGGGCTGTCTTGTCTCGGTTGTCGTTTATGATCGA
TGGGAGGGAGTGTGCGAGGATGAGGGAGGGGGCGAGGGAGGGCTTGGTGC
GGGCCTGGCCACGACAGGAGGAGGTGGATAGAGGGCTGAAGCTGGTGATG
GAGAGGgtgaggagggagggagggagggagggagggagggagggagagag
gatctctttgcactgtcttctttactcacccacgcacctttccttccctc
gatcttccttctccatccaccatgcatagTTCGCCCCCTTAACCACCATC
GACAGTGACGCCCACGAGACCGAGGACGAGGACGAGGGAGGCGCTCCTCC
TTCCCTCCCCATCACCTGGACTCGCCTCCTGTACGGTGGCATGCCTGCCG
CCGCCCGCTGCCTTAAACTCTTTGTCTTTCACTACCCCGAGCCTCACACC
TGGCGTTTTGACTCCTCCCTCCCTCCCTCCCTTCTTGCCGTTCCTCCATC
CCACCCTCCCTCCCGCCCTCCCGAGCAAAAAGGGAAAAAGGCGCGAGAGG
GGGGAAAGAAAGGTCGGAAAAAGCAAGTGGAAGGAAGGGAGGAAGAGAGG
GAGGATGAGGAGAAAGAGGAAGAGGAAGAGGAAGAGATAATACTACTGAG
TGAAGGATTTAGGGAGGGAGGGAATGAGGGAGGAAGGGAAGGAGGAAGAA
TAGGGGAGGAGACAAAACGATGGTATGAAGAGACGATGGCAGGGCTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAAGGAGAAGGAGCAAAGGAGGGGGAAAAAGAGCAGTAGAGGAGGAG
AGAGGTTTGTTGTCTATTCTCAGAAAAAAAGGGCAGGAAACAGGATAAGG
GTCTCGTCCCAGAGGCACGAAGAAAAAGAGGAAGAGGAGGAAATGGAGCA
AGAGATGACTGAACAGCCTCTGAAGAAGGAGCACCAAAGATCGAAACTGA
CGCAGCAGCAGCAGCAGCAAAAGCCTGTCCCCCATCACCATCGCCCTCCT
GTATTCTCTCACTTGTTCCCTCCTGTTTCCTCTTCCTCCTTCCACTTCAA
TGTTCAGCCACCTGGAGCTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGAAATG
CAGGGCATTGAGAAGAAAGATGATATTCATGCTGTTACTGTTGTTGTGAG
TGAGAGACAGAAAAAGAAGCAGGAGGTGAAAGTAGCCCGGCAGCGGGAAA
GGAGAGAGGCCGCTAAAGGCCGGCGTGTGATGCGGCAGGAAGGTCAAGAA
GGGCAGAGAGGGAGGGATGGAGGGGCGCCGGAGCTGGGGGGAAAGAAGGG
GAAGAAGAAGGGGAAAAAAGTGCAGGTGAGAAATCAAATAAATAAGGATC
GGATCGGTTTGGGTCCGCCAAATGGATGATGGTGCTGAAGATTGGCGATT
AAGGGTGTAGAGGGATAAGAAAGAGGGGGGGAGGGAGGGATAGGCTGTGA
GGAGATATCCGAGATACATCACCTCTTTTGCTGTTTGGTCTTCATTTCCG
TGCTGTTTCCTTTTCATTCTCATACGTTCCCTCCTCTTCAAGGAAGGAAG
TAATGATCAAAGAGGAAGATGAAAATTATGTACAGTAATAAAACAAAGTT
GTAAAGTAGTAGTAGAGGTCATTGGAAGGGAAAAGAAGGAAAGCACGACA
TCCAGAAATG
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protein sequence of NO07G04010.1

>NO07G04010.1-protein ID=NO07G04010.1-protein|Name=NO07G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=816bp
MTGRAAVVGSLQRVIKSHWPEAQIATFGSTAASLATFLSDVDVTVSGFRE
SKPNKGGSKGRRDGDKEGEVVVVANGSEEKKKSERKEEAEEEEEEAEEEE
GEEEEEERGWGTAADGDEEEAEGEEEEEEEEDFAFNTLVGGGGGGGGGEG
GGGFNTTVMSRDIQRRDLQVLYPRLIEEAHAFIDVEFRPKARVPIIYTKH
ISGLEVDIRVAPPDHAAISLLRQLSAMHPCFAPVATALKVLLHQGKMDKP
FDGGLGSYKLYLLLGKFIKYYYKGDRDDAGAVLLAFLLHFSFLEPLTKKQ
HGGGKRPFTFSFLPSLPSLPIDLGPAFRYADLRHLFHRAAVSLQDAEKHR
SLTSSSSSSSSKKKGAKPARAVLSRLSFMIDGRECARMREGAREGLVRAW
PRQEEVDRGLKLVMERFAPLTTIDSDAHETEDEDEGGAPPSLPITWTRLL
YGGMPAAARCLKLFVFHYPEPHTWRFDSSLPPSLLAVPPSHPPSRPPEQK
GKKAREGGKKGRKKQVEGREEEREDEEKEEEEEEEIILLSEGFREGGNEG
GREGGRIGEETKRWYEETMAGLEEEEEEEEEEEEEEEEEEEKEKEQRRGK
KSSRGGERFVVYSQKKRAGNRIRVSSQRHEEKEEEEEMEQEMTEQPLKKE
HQRSKLTQQQQQQKPVPHHHRPPVFSHLFPPVSSSSFHFNVQPPGAGGGG
GGRGGGRGGGGGGGGGGRRRGEMQGIEKKDDIHAVTVVVSERQKKKQEVK
VARQRERREAAKGRRVMRQEGQEGQRGRDGGAPELGGKKGKKKGKKVQVR
NQINKDRIGLGPPNG*
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Synonyms
Publications