NO07G03950, NO07G03950 (gene) Nannochloropsis oceanica

Overview
NameNO07G03950
Unique NameNO07G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3235
Alignment locationchr7:1098591..1101825 -

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Properties
Property NameValue
DescriptionZinc finger, MYND-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1098591..1101825 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO07G03950 vs. NCBI_GenBank
Match: EWM26966.1 (Zinc finger, MYND-type [Nannochloropsis gaditana])

HSP 1 Score: 452.6 bits (1163), Expect = 3.100e-123
Identity = 348/964 (36.10%), Postives = 431/964 (44.71%), Query Frame = 0 
Query:   61 PLPGFDIA-----VARPEEQTCVAESWQAITGPDALLPDEYVRLPLDELQPVFERDLRRFADKTVNPRERCRLAHYLGNFSCTASGLCMYEKAAWYVPTLYAVVKEVKDIYVSGAIVPRPCVAGYAMLALTSLVKQSMRVPFPSSVPPSSGKGHGLHPNGPHAVIDYLLGPMGCGDHGNGGSSSHXXXXXXQQRKKVRGKQDRGAAQLGKENHGSPRVLCIWTLLKYASAETARSRGALRTLSCALELLTTLELACMGRNSAIILSQNH-AVPPSTPPPLLTQLCTFEMSTEATKLIFLKAASLILKHTQSRGDVCGVAQALGLFEVMGGGAENNIVEEGREGWKAFVAADGVMPMVAALESLKDWPKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVSNARQSDRLSILSFFTDLGPAHPTLILPAVSQLIKWAGTEGPAYEHERTFALLSLARFLEGGKEGEDAQFAAELGLFPVVVRRLQNY-------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYVTLNSLLYEGMR-ASEPIRSRVCGPLLGVLVLLVHPVHLPVLSQS-SGTSRPLSR---------------------EVGNGGDNRVMMQR-ILQQLSFHSQKDLRSSSVISCLRDMVRYRKLTCASGGVWRLTVHVIMMAMLMGPGDKEGEGSREEEGRESQRLLTELQCVLKMVXXXXXXXXXXXXXXXXXXGSAVPALNRGRKPTPPWLETIFARVFKGSNATAEGRAAVEDRGEGHESLEVGIEYLSLMIFLEKEGGKEGGMGEAEEMFWEGGTEGLLGYLRMRRTEELMAQLSLVMEEEVGMGGGMGGGP----------------TCEVCKQTSEAVRRQALLRCARCRSVRYCSRECQVWHWRRGGHKEACE 936
            PL G  +A     +++PE +TCVAESWQAITGPDALLP+EY+RLP  ELQP+FE DLR  AD    PRERCRLAHYLG FS T  G CMY +A WYVPTLY VV+E+  +Y SG                                                                               + ++RG                     +WT L++ +AET RSRGAL+ L  AL LLT L+LA MGR SA   S    A PPS PP LL QL  FE S   TKL  L+AASL+L+++ S+G+VCG  Q+LGLFEVMGG   N I+ EG  GW  FV A G+ P+ AAL  L                                       XXXXXXXXXXX           V +AR++DRLSILSF TDLGPAH TLILP V  L++WAG E P Y HERTFALLSLARFL  GK+GEDA+FAA LGL+PV+VRRLQ Y                                                                        LY TLNSLL+E +  A EP+RS V G ++  +VLLVHPV     S++ + TS   SR                      VG  GD   M+ R IL +L      + RSSSV SC+R+ VRYR+LTCAS GVWRL VHV+++A+++    +  E  + + G E                                                           K    T  G     +    H +L+ G++YL+  + +  EG KE    E    FW  GT  LL  L+ +  +                GG M  GP                        +E + R  LLRCARCR VRYCS+ CQVWHW++GGH+EAC+
Sbjct:   36 PLAGLSLAHMLPGISQPEARTCVAESWQAITGPDALLPEEYLRLPTAELQPLFESDLRALADARNPPRERCRLAHYLGLFSGTPRGACMYAQADWYVPTLYGVVEEINGLYASG-------------------------------------------------------------------------------QARLRG---------------------LWTFLRHVTAETRRSRGALQALVHALGLLTVLDLANMGRTSAESRSGTETARPPSLPPSLLVQLSEFEASLTETKLCLLEAASLVLQYSHSKGEVCGATQSLGLFEVMGGEG-NAIMAEGAAGWHLFVGAGGLGPVAAALAGL---------------------------------------XXXXXXXXXXXVGKEEKGESLEVRSARRTDRLSILSFLTDLGPAHATLILPMVGALVRWAGKENPDYAHERTFALLSLARFLAQGKDGEDARFAATLGLYPVLVRRLQGYRRAVIGEEGNEXXXXXXXXXXXXXXXXXXXXXXEAGEHGELLPAALGMLVSLLLHSPETWATARTDAVQGGPLYRTLNSLLHEALHWAPEPMRSIVSGLVVACIVLLVHPVPPQGTSRAGTRTSEAGSRGRVRTGGTTATKENCREGQDEGVGGVGDQGEMVTRGILTRLWAVPDGNPRSSSVFSCVRETVRYRRLTCASPGVWRLMVHVLLVALMVIHPREVAEEGKVDGGEE-----------------------------------------------------------KAGPETGAGALRAREEFTDHAALDAGVQYLASAVVMGAEGRKE--WEEVRATFWADGTAALLEMLQKKNKDR---------------GGLMLWGPGGWXXXXXXXXXXXXXXXXXXXXXAEMLGRNTLLRCARCRRVRYCSKGCQVWHWKKGGHREACQ 783
The following BLAST results are available for this feature:
BLAST of NO07G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26966.13.100e-12336.10Zinc finger, MYND-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000450NSK000450Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03950.1NO07G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581351gene_2739Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100392g3gene3579Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03950.1NO07G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03950 ID=NO07G03950|Name=NO07G03950|organism=Nannochloropsis oceanica|type=gene|length=3235bp
ATGAGTCACGGCCGGCACAGGAAGAAGGGTCAAGGCCTCCATCACCATCA
CGGCACCGCTTCAGGTCCCCTGGGTTTCCTGCCGCCAGGCATCCTTCCCA
GCAGCCTCCCTCCTTCAGGTGCCCCAGGTGCCCCACCTATCAGCACCACG
GCGGCCGCGGCTGCCGCTGCCGCTGCGTTTCCTCTGCCTGGCTTTGATAT
TGCTGTAGCACGACCAGAAGAGCAAACCTGTGTGGCTGAATCATGGCAAG
CTATAACTGGACCCGACGCCTTGCTTCCGGATGAGTACGTGAGACTGCCT
TTAGATGAGCTCCAACCAGTCTTCGAAAGGGACTTGAGACGCTTCGCCGA
CAAAACCGTAAATCCACGGGAACGCTGTCGTTTAGCACACTATCTCGGAA
ATTTTTCTTGCACCGCCTCCGGGCTTTGTATGTATGAAAAGGCCGCTTGG
TACGTCCCTACGCTCTATGCGGTCGTTAAGGAGGTGAAAGACATCTATGT
GTCCGGTGCCATAGTCCCACGACCTTGCGTGGCAGGCTACGCAATGCTGG
CCTTGACGAGTCTAGTCAAGCAAAGCATGCGTGTGCCATTCCCTTCTTCC
GTCCCTCCTTCCTCGGGGAAGGGGCATGGTCTTCATCCTAATGGGCCGCA
TGCCGTGATTGATTATTTGCTTGGCCCGATGGGTTGTGGAGATCATGGCA
ACGGTGGCAGTAGCAGCCACAGCGGGAGCAGCGGAAAGCAACAGAGAAAA
AAGGTCCGCGGTAAGCAAGACCGAGGAGCAGCACAGCTGGGAAAAGAAAA
CCACGGTAGCCCCCGTGTCCTCTGCATTTGGACGTTGCTCAAGTACGCTT
CGGCCGAAACGGCGCGTTCGCGTGGCGCCCTCCGCACCCTCTCCTGCGCC
CTTGAGCTTCTTACCACCCTCGAACTTGCCTGCATGGGCCGCAACTCTGC
GATCATTCTTTCCCAAAACCACGCCGTCCCTCCCTCCACCCCTCCCCCCC
TGCTAACCCAGCTCTGTACGTTCGAAATGTCCACAGAAGCGACCAAATTG
ATTTTCTTAAAGGCAGCGTCTTTGATCCTGAAACACACACAATCAAGAGG
AGATGTTTGCGGGGTGGCTCAGGCCTTGGGGTTATTCGAGGTTATGGGAG
GAGGGGCGGAGAATAATATTGTTGAGGAAGGGAGGGAGGGATGGAAGGCG
TTCGTCGCGGCGGATGGGGTAATGCCAATGGTGGCGGCGCTGGAAAGCCT
GAAGGACTGGCCGAAGAAGAGGGATGGGAGGAAGCGAAGGAGGAGGAGAA
GGAGGGTGGAGGAAGTTGGAGAGGAAGGGGAGGAATGGTCGACGACGTTG
GAGGAGGAGGAGGAGGACGACGACGACGAGGAGGAAGAGGAGAGTAAAGA
GGTGGACGAGAACGACGAGGAGGAGATCATAAATGTATCAAATGCGCGTC
AGTCAGACCGTTTATCAATCCTTTCCTTCTTCACTGATCTGGGGCCCGCA
CACCCTACCCTTATTTTGCCTGCGGTGAGTCAGCTGATCAAATGGGCGGG
TACGGAGGGTCCGGCATACGAGCATGAACGGACGTTCGCCCTCCTTTCTC
TCGCGCGGTTTTTGGAGGGAGGGAAAGAGGGAGAGGATGCACAATTTGCG
GCGGAATTGGGTTTGTTTCCTGTAGTGGTTAGGAGGTTGCAGAATTATCG
GAAGGCGGTGGTGGCGGCGGCGGCGGGGGGGGGAGGGGGCGACgtacgtg
tggatgttgtaatggaggaaggaagggagatggtgatggaggggagaagg
atgtgggggaaggaggggggcagcatggtgagctcgtgcccgcggcgttg
gaactcttgcttagcttgcttctacactccgagaagTCGCGGCAGGCGGC
GTGTGAAGATGCGGCGGGAGGCGGCCGGTTGTACGTGACATTAAACTCAC
TCCTTTACGAGGGAATGCGGGCATCGGAACCAATCCGGAGTCGAGTCTGT
GGACCCCTGCTGGGGGTCCTCGTCCTCCTCGTCCACCCCGTGCACTTGCC
CGTCCTCTCTCAGTCGAGCGGCACGAGCAGACCGTTGAGTCGGGAGGTGG
GCAATGGAGGGGACAATCGTGTCATGATGCAGAGGATCCTCCAACAATTA
TCGTTCCATTCCCAGAAAGACTTAAGGAGCTCGTCTGTGATCTCGTGTTT
GAGGGATATGGTGAGATATAGGAAGTTGACATGTGCTTCGGGAGGGGTGT
GGCGATTAACTGTCCATGTGATTATGATGGCGATGCTGATGGGACCGGGG
GACAAGGAGGGGGAGGGAAGCAGGGAGGAAGAGGGGAGGGAATCGCAGAG
GCTCTTGACGGAATTGCAGTGTGTGTTGAAGATGGTGATGTTGGAGGAGC
AGGAGGAGGGGGAGGAGGATGAGGAGAGAAGGAAAGAGGCTGGGAGCGCT
GTGCCTGCTTTGAATAGAGGAAGGAAGCCGACTCCTCCTTGGTTGGAAAC
TATTTTCGCTCGTGTGTTCAAGGGAAGCAATGCGACAGCAGAAGGGAGAG
CGGCAGTAGAGGATAGGGGCGAGGGGCACGAGTCGCTGGAGGTGGGGATC
GAGTACCTGTCGCTGATGATCTTTCTGGAGAAGGAGGGGGGGAAGGAGGG
AGGGATGGGGGAAGCAGAGGAGATGTTTTGGGAAGGAGGAACGGAGGGGC
TGCTTGGCTATCTAAGAATGAGGAGAACTGAAGAGCTGATGGCACAATTA
TCCTTAGTGATGGAGGAGGAGGTTGGAATGGGAGGAGGGATGGGGGGAGG
ACCGACGTGTGAGGTGTGTAAGCAGACGTCGGAGGCTGTAAGGAGGCAGG
CGTTGCTGAGGTGCGCGCGATGTCGAAGTGTACGATATTGCTCGAGGGAG
TGCCAGgtaggtggagggaggaaggaatttagggaggaagggctgaggtc
gtcagcttaacgatatatatttcgcctcattgacccgtcagcgttctctg
cttttagtcgtaggtctggcactagaggcggggcggacaccgcttgactc
attataattatctacttacttctctaatatcatataattacgctcatttc
tcttatgtaatataccagGTCTGGCACTGGAGGCGGGGTGGACACAAGGA
AGCCTGCGAACAGCTTATTGCTGTTGCTAAAACGGCTGCACCTGCAGTGA
CTACAGTCTCTGCGGTTTCAACTCAACAGCAGTAA
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protein sequence of NO07G03950.1

>NO07G03950.1-protein ID=NO07G03950.1-protein|Name=NO07G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=960bp
MSHGRHRKKGQGLHHHHGTASGPLGFLPPGILPSSLPPSGAPGAPPISTT
AAAAAAAAAFPLPGFDIAVARPEEQTCVAESWQAITGPDALLPDEYVRLP
LDELQPVFERDLRRFADKTVNPRERCRLAHYLGNFSCTASGLCMYEKAAW
YVPTLYAVVKEVKDIYVSGAIVPRPCVAGYAMLALTSLVKQSMRVPFPSS
VPPSSGKGHGLHPNGPHAVIDYLLGPMGCGDHGNGGSSSHSGSSGKQQRK
KVRGKQDRGAAQLGKENHGSPRVLCIWTLLKYASAETARSRGALRTLSCA
LELLTTLELACMGRNSAIILSQNHAVPPSTPPPLLTQLCTFEMSTEATKL
IFLKAASLILKHTQSRGDVCGVAQALGLFEVMGGGAENNIVEEGREGWKA
FVAADGVMPMVAALESLKDWPKKRDGRKRRRRRRRVEEVGEEGEEWSTTL
EEEEEDDDDEEEEESKEVDENDEEEIINVSNARQSDRLSILSFFTDLGPA
HPTLILPAVSQLIKWAGTEGPAYEHERTFALLSLARFLEGGKEGEDAQFA
AELGLFPVVVRRLQNYRKAVVAAAAGGGGGDSRQAACEDAAGGGRLYVTL
NSLLYEGMRASEPIRSRVCGPLLGVLVLLVHPVHLPVLSQSSGTSRPLSR
EVGNGGDNRVMMQRILQQLSFHSQKDLRSSSVISCLRDMVRYRKLTCASG
GVWRLTVHVIMMAMLMGPGDKEGEGSREEEGRESQRLLTELQCVLKMVML
EEQEEGEEDEERRKEAGSAVPALNRGRKPTPPWLETIFARVFKGSNATAE
GRAAVEDRGEGHESLEVGIEYLSLMIFLEKEGGKEGGMGEAEEMFWEGGT
EGLLGYLRMRRTEELMAQLSLVMEEEVGMGGGMGGGPTCEVCKQTSEAVR
RQALLRCARCRSVRYCSRECQVWHWRRGGHKEACEQLIAVAKTAAPAVTT
VSAVSTQQQ*
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Synonyms
Publications