NO07G03120, NO07G03120 (gene) Nannochloropsis oceanica

Overview
NameNO07G03120
Unique NameNO07G03120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2465
Alignment locationchr7:867904..870368 -

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Properties
Property NameValue
DescriptionThylakoid lumenal 15 kDa protein 1, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:867904..870368 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Homology
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BLAST of NO07G03120 vs. NCBI_GenBank
Match: EJK47511.1 (hypothetical protein THAOC_33758, partial [Thalassiosira oceanica])

HSP 1 Score: 64.3 bits (155), Expect = 7.200e-7
Identity = 72/130 (55.38%), Postives = 85/130 (65.38%), Query Frame = 0 
Query:  167 NIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTRLTGVE-IEGSDWSGTFLRKDQQQYLCNR--ASGVNPITKISTKESLMC 294
            N++ ++F+G +L GV+FQQS+VR           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX               G T   GV+ IE SDWS T LRKDQQ+YLC    A G NP+T + T+ESLMC
Sbjct:    1 NLDRSDFKGLNLKGVAFQQSIVR----------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCNVENAIVKEMYVSGATLFEGVKSIENSDWSDTQLRKDQQKYLCEHPTAKGTNPVTGVDTRESLMC 120
The following BLAST results are available for this feature:
BLAST of NO07G03120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EJK47511.17.200e-755.38hypothetical protein THAOC_33758, partial [Thalass... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000547NSK000547Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03120.2NO07G03120.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G03120.1NO07G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637532gene_2644Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g38gene3487Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03120.2NO07G03120.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G03120.1NO07G03120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03120 ID=NO07G03120|Name=NO07G03120|organism=Nannochloropsis oceanica|type=gene|length=2465bp
CTTGTGAACAGCGTGGTCTGGCCTAATAGCGGTTAATTGAGTGGTAAAGG
GTGTGTGCGGGTATAGAGAAGGATGAGATGATGATGCGGTGTGTGGGTGG
AGGGAGGAGGCGAATGAGGATGCATGGAGGCCTGGGGTCTTGCAAGCCTG
CCTTGTGGCCAATCAGTCATACGACCTCATCTCTCCCCTTGCTTACATAC
CGACAAGGCTTGCCGTTCGTGAGATGGTGTTACACGCGAGGCGACAAGGG
AAGAAGGAGCGAGGCCTTCCATCCACAAGAACGGACTGGAGCCTGCATCT
CGCGCCAGATAAATTCTGTCTTATTCAATGACACTCAAGTAGTGTGTGTT
GTGCGACACCGCAAGCGGTGGCAAAGACAGAAGCATGCCCGGTAGAAAAC
CCTTTTACAACTACGCCTAATGCTCCCCTTTCTCCTCCCTTCTCATTGTC
CCAATAACAACAGGCCACAAAATGAAGTTGACGACAAGCAACTTGCTGCT
TCCCGTCCTCGGCCTTCTCCTACTCCTTTGCCCCGCGACGCACGCCTTTC
CTTTGCACTCCTTCTTTGGCAGCGGCAGCTGCAGAGCCACAACTTCTTCG
CCAACTTCTTTCAAGGTAGCAGCAGGCGTAGTGACATCCGAGGAGGCATC
GTTGTCCAAGgtacttatgggattgtagattggagggaaggagggaggga
gacgacaagcacgcacaccttgagctggtggcactgttaaacttggtgga
gtgtcttaatttagatgtctcgcaaatttggacatagtattcaccttttc
cttcatgtatcataccaacgacagCGCTCCGCGGCCCTGATAGTCCCTCC
TCCTCCTTCTCCCTGTCCCGCAACGTGCCAGCCTGACGCCATCATTAAGA
GACACGGCGCATCTCCTTTATTCTACCTGGCGCGATTTGCCATGGCATTA
GCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTTATCCACAGCGTT
GTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGGATGAGGTGG
GGACAGACACGGATTTTAAGgtaagcgtgcgggaggagtgaggttgggag
atagagcagggagaggaaaggagggggggcacttttctagagcgttaaat
gggaacatattggaatggaaacgtcaagctggcgcatgaagagagataca
ctcacttacagttaattcacccacgtctatatcacgcgtgcacagATAAA
GAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAAGACCATGACTC
GGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAGACCTGACGgta
tggagggagggagggagggagggagggaggggggaagggcctgcgggcga
ggagcaagagaaggtcgttctggaatttcttcccttcttttctcctcttc
gttctcctcctcctcatcactaccctcctcttcctgcttccaatcattat
tcctttatgtgcattcagcatcactcatcgcaactacttgttgctcacca
cttacccctcagGGCGTGAGCTTTCAGCAGTCCTTGGTGCGCGCCGGGAA
CTTCCGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACGCCGACCTGT
CTAgtaagtgccatggaagggtagggtattaggcctttccacaccttcct
ggcctccccacttaatttcttcctcctccctctctttcctccctccctct
ttccctccctccctccctaacttggtttagACGCGGACTTCACGGGCGCG
AACATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCATTCT
GAAGGATGCACTGGTCCGCGAAGCTTACGTGTCAGGGACGACAAGATTGA
CGGGTAGGATGGGGGGAAGGAAGGGCGGGAGAGGAAGGTGTGTGTGGACA
AGACGCGTTGGTTTGCTGCCCAGGAGGGGGAATGGGAGAGACTGAGCGTG
TCGAAGTCTATTCTTTGGCGGACATATCATCTGTCGGGGATACTGTTGGG
CCTGTGACTCAATGGCATGTACCATGCGTGCTCCACTCCCTCGCCACGTC
CTCTTCCCCTGGCCCCATTAGGGAGTGAAGTTGTGGACCAATGACACATC
AAGTATGCACTGGACAAATGTTTTCTTCATAACTGGCATGGCAGCCATAG
AGGAGGCCTCTTCTCGTGCGCTCTGAGCGTTTCTATGAACCTGACTTGCA
CTCCCTCTCACATCATTCCCTCCCACCCCACACCGAACAGGAGTCGAAAT
CGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGACCAGCAGCAAT
ACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAAAATCTCGACC
AAAGAGAGCTTAATGTGCCCGGAATAGAACCCAAAAAATTTGAGGGGGGG
GGGGGGACAAAAAGA
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protein sequence of NO07G03120.2

>NO07G03120.2-protein ID=NO07G03120.2-protein|Name=NO07G03120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MKLTTSNLLLPVLGLLLLLCPATHAFPLHSFFGSGSCRATTSSPTSFKVA
AGVVTSEEASLSKRSAALIVPPPPSPCPATCQPDAIIKRHGASPLFYLAR
FAMALAPSSLMMIGAGTLSTALFAPVETVHAAAGADEVGTDTDFKIKRGA
ASTLNQGIVKTMTRGVNIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFT
ASFFDADLSNADFTGANMDQVNLELANLKGAILKDALVREAYVSGTTRLT
GRMGGRKGGRGRCVWTRRVGLLPRRGNGRD*
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protein sequence of NO07G03120.1

>NO07G03120.1-protein ID=NO07G03120.1-protein|Name=NO07G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MKLTTSNLLLPVLGLLLLLCPATHAFPLHSFFGSGSCRATTSSPTSFKVA
AGVVTSEEASLSKRSAALIVPPPPSPCPATCQPDAIIKRHGASPLFYLAR
FAMALAPSSLMMIGAGTLSTALFAPVETVHAAAGADEVGTDTDFKIKRGA
ASTLNQGIVKTMTRGVNIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFT
ASFFDADLSNADFTGANMDQVNLELANLKGAILKDALVREAYVSGTTRLT
GVEIEGSDWSGTFLRKDQQQYLCNRASGVNPITKISTKESLMCPE*
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Synonyms
Publications