|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:867904..870368 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03120.2 vs.
Match: EWM27031.1 (hypothetical protein Naga_100056g38 [Nannochloropsis gaditana]) HSP 1 Score: 248.4 bits (633), Expect = 2.600e-62 Identity = 156/253 (61.66%), Postives = 176/253 (69.57%), Query Frame = 0
Query: 1 MKLTTSNLLLPVLGLLLLLCPAT-HAFPLHSFFGSGSCRATTSSPTSFKVAAGVVTSEEASLSKRSAALIVPPPPSPCPATCQPDAIIKRHGASPLFYLARFAMALAPSSL--MMIGAGTLSTALFAPVETVHAAAGADEVGTDTDFKIKRGAASTLNQGIVKTMTRGVNIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFTASFFDADLSNADFTGANMDQVNLELANLKGAILKDALVREAYVSGTTRLT 251
M+ T + LP LGLLLL C T F GS + T K A ++ S++KR+AAL+VPP PS + + + GASP FYLARFAMAL PSS+ + IG G L+ AL APV VHA TDTDFKIK+G+ASTLN G VKTMTRGVNIENANFEGKDLT VSFQQSLVR GNFRG+KC +ASFFDADLSNADFTGANMDQ NLELANLKGAI KDA+VREAYVSG TRLT
Sbjct: 41 MRRTAPSSGLP-LGLLLLTCLVTCRGFAFQPLGGS-------HASTLHKTKAATSAPDDVSVAKRTAALMVPPLPSRSGREGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGIGFGALAPALVAPVPAVHAQ-------TDTDFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSNADFTGANMDQANLELANLKGAIFKDAMVREAYVSGATRLT 278
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03120.2 ID=NO07G03120.2|Name=NO07G03120.2|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
CTTGTGAACAGCGTGGTCTGGCCTAATAGCGGTTAATTGAGTGGTAAAGG
GTGTGTGCGGGTATAGAGAAGGATGAGATGATGATGCGGTGTGTGGGTGG
AGGGAGGAGGCGAATGAGGATGCATGGAGGCCTGGGGTCTTGCAAGCCTG
CCTTGTGGCCAATCAGTCATACGACCTCATCTCTCCCCTTGCTTACATAC
CGACAAGGCTTGCCGTTCGTGAGATGGTGTTACACGCGAGGCGACAAGGG
AAGAAGGAGCGAGGCCTTCCATCCACAAGAACGGACTGGAGCCTGCATCT
CGCGCCAGATAAATTCTGTCTTATTCAATGACACTCAAGTAGTGTGTGTT
GTGCGACACCGCAAGCGGTGGCAAAGACAGAAGCATGCCCGGTAGAAAAC
CCTTTTACAACTACGCCTAATGCTCCCCTTTCTCCTCCCTTCTCATTGTC
CCAATAACAACAGGCCACAAAATGAAGTTGACGACAAGCAACTTGCTGCT
TCCCGTCCTCGGCCTTCTCCTACTCCTTTGCCCCGCGACGCACGCCTTTC
CTTTGCACTCCTTCTTTGGCAGCGGCAGCTGCAGAGCCACAACTTCTTCG
CCAACTTCTTTCAAGGTAGCAGCAGGCGTAGTGACATCCGAGGAGGCATC
GTTGTCCAAGCGCTCCGCGGCCCTGATAGTCCCTCCTCCTCCTTCTCCCT
GTCCCGCAACGTGCCAGCCTGACGCCATCATTAAGAGACACGGCGCATCT
CCTTTATTCTACCTGGCGCGATTTGCCATGGCATTAGCCCCGTCCTCGTT
GATGATGATCGGGGCTGGGACGTTATCCACAGCGTTGTTTGCGCCAGTGG
AGACGGTGCATGCTGCTGCTGGGGCGGATGAGGTGGGGACAGACACGGAT
TTTAAGATAAAGAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAA
GACCATGACTCGGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAG
ACCTGACGGGCGTGAGCTTTCAGCAGTCCTTGGTGCGCGCCGGGAACTTC
CGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACGCCGACCTGTCTAA
CGCGGACTTCACGGGCGCGAACATGGATCAAGTCAACCTGGAATTGGCCA
ACTTGAAAGGCGCCATTCTGAAGGATGCACTGGTCCGCGAAGCTTACGTG
TCAGGGACGACAAGATTGACGGGTAGGATGGGGGGAAGGAAGGGCGGGAG
AGGAAGGTGTGTGTGGACAAGACGCGTTGGTTTGCTGCCCAGGAGGGGGA
ATGGGAGAGACTGAGCGTGTCGAAGTCTATTCTTTGGCGGACATATCATC
TGTCGGGGATACTGTTGGGCCTGTGACTCAATGGCATGTACCATGCGTGC
TCCACTCCCTCGCCACGTCCTCTTCCCCTGGCCCCATTAGGGAGTGAAGT
TGTGGACCAATGACACATCAAGTATGCACTGGACAAATGTTTTCTTCATA
ACTGGCATGGCAGCCATAGAGGAGGCCTCTTCTCGTGCGCTCTGAGCGTT
TCTATGAACCTGACTTGCACTCCCTCTCACATCATTCCCTCCCACCCCAC
ACCGAACAGGAGTCGAAATCGAAGGCAGTGATTGGTCGGGCACCTTCCTG
CGCAAGGACCAGCAGCAATACTTGTGCAATCGGGCCAGTGGTGTGAACCC
CATCACTAAAATCTCGACCAAAGAGAGCTTAATGTGCCCGGAATAGAACC
CAAAAAATTTGAGGGGGGGGGGGGGACAAAAAGA back to topprotein sequence of NO07G03120.2 >NO07G03120.2-protein ID=NO07G03120.2-protein|Name=NO07G03120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MKLTTSNLLLPVLGLLLLLCPATHAFPLHSFFGSGSCRATTSSPTSFKVA
AGVVTSEEASLSKRSAALIVPPPPSPCPATCQPDAIIKRHGASPLFYLAR
FAMALAPSSLMMIGAGTLSTALFAPVETVHAAAGADEVGTDTDFKIKRGA
ASTLNQGIVKTMTRGVNIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFT
ASFFDADLSNADFTGANMDQVNLELANLKGAILKDALVREAYVSGTTRLT
GRMGGRKGGRGRCVWTRRVGLLPRRGNGRD* back to topmRNA from alignment at chr7:867904..870368- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03120.2 ID=NO07G03120.2|Name=NO07G03120.2|organism=Nannochloropsis oceanica|type=mRNA|length=2465bp|location=Sequence derived from alignment at chr7:867904..870368- (Nannochloropsis oceanica)
CTTGTGAACAGCGTGGTCTGGCCTAATAGCGGTTAATTGAGTGGTAAAGG
GTGTGTGCGGGTATAGAGAAGGATGAGATGATGATGCGGTGTGTGGGTGG
AGGGAGGAGGCGAATGAGGATGCATGGAGGCCTGGGGTCTTGCAAGCCTG
CCTTGTGGCCAATCAGTCATACGACCTCATCTCTCCCCTTGCTTACATAC
CGACAAGGCTTGCCGTTCGTGAGATGGTGTTACACGCGAGGCGACAAGGG
AAGAAGGAGCGAGGCCTTCCATCCACAAGAACGGACTGGAGCCTGCATCT
CGCGCCAGATAAATTCTGTCTTATTCAATGACACTCAAGTAGTGTGTGTT
GTGCGACACCGCAAGCGGTGGCAAAGACAGAAGCATGCCCGGTAGAAAAC
CCTTTTACAACTACGCCTAATGCTCCCCTTTCTCCTCCCTTCTCATTGTC
CCAATAACAACAGGCCACAAAATGAAGTTGACGACAAGCAACTTGCTGCT
TCCCGTCCTCGGCCTTCTCCTACTCCTTTGCCCCGCGACGCACGCCTTTC
CTTTGCACTCCTTCTTTGGCAGCGGCAGCTGCAGAGCCACAACTTCTTCG
CCAACTTCTTTCAAGGTAGCAGCAGGCGTAGTGACATCCGAGGAGGCATC
GTTGTCCAAGGTACTTATGGGATTGTAGATTGGAGGGAAGGAGGGAGGGA
GACGACAAGCACGCACACCTTGAGCTGGTGGCACTGTTAAACTTGGTGGA
GTGTCTTAATTTAGATGTCTCGCAAATTTGGACATAGTATTCACCTTTTC
CTTCATGTATCATACCAACGACAGCGCTCCGCGGCCCTGATAGTCCCTCC
TCCTCCTTCTCCCTGTCCCGCAACGTGCCAGCCTGACGCCATCATTAAGA
GACACGGCGCATCTCCTTTATTCTACCTGGCGCGATTTGCCATGGCATTA
GCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTTATCCACAGCGTT
GTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGGATGAGGTGG
GGACAGACACGGATTTTAAGGTAAGCGTGCGGGAGGAGTGAGGTTGGGAG
ATAGAGCAGGGAGAGGAAAGGAGGGGGGGCACTTTTCTAGAGCGTTAAAT
GGGAACATATTGGAATGGAAACGTCAAGCTGGCGCATGAAGAGAGATACA
CTCACTTACAGTTAATTCACCCACGTCTATATCACGCGTGCACAGATAAA
GAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAAGACCATGACTC
GGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAGACCTGACGGTA
TGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAAGGGCCTGCGGGCGA
GGAGCAAGAGAAGGTCGTTCTGGAATTTCTTCCCTTCTTTTCTCCTCTTC
GTTCTCCTCCTCCTCATCACTACCCTCCTCTTCCTGCTTCCAATCATTAT
TCCTTTATGTGCATTCAGCATCACTCATCGCAACTACTTGTTGCTCACCA
CTTACCCCTCAGGGCGTGAGCTTTCAGCAGTCCTTGGTGCGCGCCGGGAA
CTTCCGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACGCCGACCTGT
CTAGTAAGTGCCATGGAAGGGTAGGGTATTAGGCCTTTCCACACCTTCCT
GGCCTCCCCACTTAATTTCTTCCTCCTCCCTCTCTTTCCTCCCTCCCTCT
TTCCCTCCCTCCCTCCCTAACTTGGTTTAGACGCGGACTTCACGGGCGCG
AACATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCATTCT
GAAGGATGCACTGGTCCGCGAAGCTTACGTGTCAGGGACGACAAGATTGA
CGGGTAGGATGGGGGGAAGGAAGGGCGGGAGAGGAAGGTGTGTGTGGACA
AGACGCGTTGGTTTGCTGCCCAGGAGGGGGAATGGGAGAGACTGAGCGTG
TCGAAGTCTATTCTTTGGCGGACATATCATCTGTCGGGGATACTGTTGGG
CCTGTGACTCAATGGCATGTACCATGCGTGCTCCACTCCCTCGCCACGTC
CTCTTCCCCTGGCCCCATTAGGGAGTGAAGTTGTGGACCAATGACACATC
AAGTATGCACTGGACAAATGTTTTCTTCATAACTGGCATGGCAGCCATAG
AGGAGGCCTCTTCTCGTGCGCTCTGAGCGTTTCTATGAACCTGACTTGCA
CTCCCTCTCACATCATTCCCTCCCACCCCACACCGAACAGGAGTCGAAAT
CGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGACCAGCAGCAAT
ACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAAAATCTCGACC
AAAGAGAGCTTAATGTGCCCGGAATAGAACCCAAAAAATTTGAGGGGGGG
GGGGGGACAAAAAGA back to topCoding sequence (CDS) from alignment at chr7:867904..870368- >NO07G03120.2 ID=NO07G03120.2|Name=NO07G03120.2|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr7:867904..870368- (Nannochloropsis oceanica)
ATGAAGTTGACGACAAGCAACTTGCTGCTTCCCGTCCTCGGCCTTCTCCT
ACTCCTTTGCCCCGCGACGCACGCCTTTCCTTTGCACTCCTTCTTTGGCA
GCGGCAGCTGCAGAGCCACAACTTCTTCGCCAACTTCTTTCAAGGTAGCA
GCAGGCGTAGTGACATCCGAGGAGGCATCGTTGTCCAAGCGCTCCGCGGC
CCTGATAGTCCCTCCTCCTCCTTCTCCCTGTCCCGCAACGTGCCAGCCTG
ACGCCATCATTAAGAGACACGGCGCATCTCCTTTATTCTACCTGGCGCGA
TTTGCCATGGCATTAGCCCCGTCCTCGTTGATGATGATCGGGGCTGGGAC
GTTATCCACAGCGTTGTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTG
GGGCGGATGAGGTGGGGACAGACACGGATTTTAAGATAAAGAGGGGCGCA
GCCTCGACTCTGAACCAGGGGATTGTCAAGACCATGACTCGGGGCGTTAA
TATCGAGAATGCAAATTTTGAGGGGAAAGACCTGACGGGCGTGAGCTTTC
AGCAGTCCTTGGTGCGCGCCGGGAACTTCCGTGGGTCCAAGTGTTTCACT
GCCTCCTTCTTCGACGCCGACCTGTCTAACGCGGACTTCACGGGCGCGAA
CATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCATTCTGA
AGGATGCACTGGTCCGCGAAGCTTACGTGTCAGGGACGACAAGATTGACG
GGTAGGATGGGGGGAAGGAAGGGCGGGAGAGGAAGGTGTGTGTGGACAAG
ACGCGTTGGTTTGCTGCCCAGGAGGGGGAATGGGAGAGACTGA back to top
|