NO07G02570, NO07G02570 (gene) Nannochloropsis oceanica

Overview
NameNO07G02570
Unique NameNO07G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr7:747178..748110 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhytanoyl-dioxygenase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:747178..748110 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO07G02570 vs. NCBI_GenBank
Match: XP_021361587.1 (uncharacterized protein LOC110455660 [Mizuhopecten yessoensis])

HSP 1 Score: 141.4 bits (355), Expect = 4.900e-30
Identity = 83/212 (39.15%), Postives = 122/212 (57.55%), Query Frame = 0
Query:   79 FQSHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENA-EFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRK 290
            F++HL LP++  ++T   +++ V  +LGPD++ W T+   K P S K    HQDSTY G++PP D +TVWVALT +   NGC++F       G QL H     D S  LL GQ IP   ++ E++     EL AG+A++H    VH+SGPN ++  R+G+A+RY    V+Q      +    V G+D  GHF   P P + + EE ++ HRK
Sbjct:   56 FKAHLLLPWLHDLVTHPKVVDLVCQLLGPDVVCWSTDLFPKDPGSGKSCGWHQDSTYIGMDPP-DALTVWVALTDSNIDNGCVEFSSKSHLKG-QLDHTNTMSDKS-MLLYGQEIP---VEVEKSTIVSAELTAGQASVHHVMTVHSSGPNNSNVRRIGVALRYCGAYVKQKL-DIGDSVTYVCGQDH-GHFSFEPQPSKIFGEEEIIAHRK 259          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: OUU37386.1 (hypothetical protein CBC11_09205 [Proteobacteria bacterium TMED51])

HSP 1 Score: 141.0 bits (354), Expect = 6.400e-30
Identity = 88/218 (40.37%), Postives = 121/218 (55.50%), Query Frame = 0
Query:   82 HLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAM-QVNY 299
            HLFLPF+  ++   +IL  V SILG DLLVW T + TK P S    A HQD  Y GL+   D VTVWVAL+ A+  +GC++FVP      ++ PH + P   +  L +GQ +  A  D    A    L  G+ ++H     HAS PN     R+G AIRY+KPS++Q AG  R  A LV G+D + +F+L P P      E + L ++ +    Q+NY
Sbjct:   66 HLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGLD-ARDEVTVWVALSQASVESGCMRFVPASHI--KEAPHADRPAKGA-MLSRGQELIEAVDD--SQAVNAPLLPGQMSLHHGLTFHASMPNRADDRRIGFAIRYIKPSMRQ-AGGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINY 276          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: OUU40344.1 (hypothetical protein CBC11_03400 [Proteobacteria bacterium TMED51])

HSP 1 Score: 141.0 bits (354), Expect = 6.400e-30
Identity = 88/218 (40.37%), Postives = 121/218 (55.50%), Query Frame = 0
Query:   82 HLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAM-QVNY 299
            HLFLPF+  ++   +IL  V SILG DLLVW T + TK P S    A HQD  Y GL+   D VTVWVAL+ A+  +GC++FVP      ++ PH + P   +  L +GQ +  A  D    A    L  G+ ++H     HAS PN     R+G AIRY+KPS++Q AG  R  A LV G+D + +F+L P P      E + L ++ +    Q+NY
Sbjct:   66 HLFLPFLDGLIRHPAILGSVASILGEDLLVWGTSFFTKEPRSADYVAWHQDLHYWGLD-ARDEVTVWVALSQASVESGCMRFVPASHI--KEAPHADRPAKGA-MLSRGQELIEAVDD--SQAVNAPLLPGQMSLHHGLTFHASMPNRADDRRIGFAIRYIKPSMRQ-AGGERGVATLVQGEDRYQNFELAPRPQSVAAPEDIALWQRAVSIQNQINY 276          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: WP_068333997.1 (phytanoyl-CoA dioxygenase family protein [Ruegeria profundi] >KUJ81411.1 phytanoyl-CoA dioxygenase [Ruegeria profundi])

HSP 1 Score: 140.2 bits (352), Expect = 1.100e-29
Identity = 78/209 (37.32%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   81 SHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRK 290
            +HL +P  A I   + +L+ V  ILGPD++VW  E+  K   ++     HQD TY G+    D VT W+AL+ AT A+GC+ FV    +    LPH +   D +N L +GQ I  A    EE    +EL  G+ ++H    +H SGPN +   R+GLAIRY+ P+ +QL    R+ AML  G+D   +F  +  P E + E+ L L+ +
Sbjct:   67 AHLVIPLAAQIALDKRVLDVVEHILGPDIMVWSAEFFVKEANTEHTVGMHQDLTYWGMGETPDQVTAWIALSPATVASGCMDFV-QGSHKNPILPHTDTYSD-TNLLSRGQEI--AVEVAEEEKTHIELAPGQMSLHHGLTIHGSGPNRSDDRRIGLAIRYLNPNARQLVAD-RDYAMLARGRDGQSNFVAVDPPQELFSEQSLALYEQ 270          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: CUH47547.1 (chlorinating enzymes [Ruegeria atlantica])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 76/209 (36.36%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   81 SHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRK 290
            +HL +P  A + T   +L+ V  +LGPD+LVW  E+  K P +      HQD TY G+    D +T W+AL+ AT  +GC+ FV    +    LPH +   D +N L +GQ +  A    EE+   +EL  G+ ++H    +H SGPN +   R+GLAIRY+ P+ +QL  + R+ AML  G+D   +F  +  P E +  + L L+ K
Sbjct:  109 AHLVMPLAARVATDPRVLDVVEGVLGPDILVWSAEFFIKEPRTAHTVGMHQDLTYWGMGETPDQITAWIALSPATVESGCMDFV-RASHKKPILPHKDTYSD-TNLLSRGQEV--AVDVAEEDKTHIELAPGQISLHHGLTIHGSGPNQSDDRRIGLAIRYLNPNAKQLVAE-RDYAMLARGQDGQNNFVHVQPPTELFSADALALYEK 312          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: WP_058277251.1 (phytanoyl-CoA dioxygenase family protein [Ruegeria atlantica])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 76/209 (36.36%), Postives = 115/209 (55.02%), Query Frame = 0
Query:   81 SHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRK 290
            +HL +P  A + T   +L+ V  +LGPD+LVW  E+  K P +      HQD TY G+    D +T W+AL+ AT  +GC+ FV    +    LPH +   D +N L +GQ +  A    EE+   +EL  G+ ++H    +H SGPN +   R+GLAIRY+ P+ +QL  + R+ AML  G+D   +F  +  P E +  + L L+ K
Sbjct:   68 AHLVMPLAARVATDPRVLDVVEGVLGPDILVWSAEFFIKEPRTAHTVGMHQDLTYWGMGETPDQITAWIALSPATVESGCMDFV-RASHKKPILPHKDTYSD-TNLLSRGQEV--AVDVAEEDKTHIELAPGQISLHHGLTIHGSGPNQSDDRRIGLAIRYLNPNAKQLVAE-RDYAMLARGQDGQNNFVHVQPPTELFSADALALYEK 271          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: PPR63490.1 (hypothetical protein CFH04_00600 [Alphaproteobacteria bacterium MarineAlpha3_Bin3])

HSP 1 Score: 139.8 bits (351), Expect = 1.400e-29
Identity = 86/217 (39.63%), Postives = 116/217 (53.46%), Query Frame = 0
Query:   82 HLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEEN-AEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAMQVN 298
            HL     A ++ +E+ILE V  ++GPD+LVW T    K P      + HQDSTY GLEPP D+VT WVAL+     +G ++F+P     G QL H  +  D +N L +GQ     +LD +E+ A    L  GE ++H  R  HAS  N T   RVG+AIR + P V+Q  G  R  A LV G+D++GHFD  P P      + +  H   M     N
Sbjct:   56 HLLFTGFADLVRNEAILEAVEDVIGPDILVWGTNLFIKDPRDPAFVSWHQDSTYWGLEPP-DLVTAWVALSDVPVESGAMKFIPGSHTRG-QLAH-HDTFDENNLLTRGQ-----SLDMDESRAVPAPLTRGEMSLHDVRLAHASSANETGERRVGIAIRCIPPHVRQTEG--RTSATLVRGRDDFGHFDPEPRPTADMTPDAVAAHEAAMSERFAN 262          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: CUH44614.1 (chlorinating enzymes [Ruegeria atlantica])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 79/232 (34.05%), Postives = 123/232 (53.02%), Query Frame = 0
Query:   61 DLENAVRPLLEGD-----SDIRPFQSHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLH 288
            +LE   R  L+ D     +  +   +HL +P  A + T   +L+ V  +LGPD++VW  E+  K P +      HQD TY G+    D VT W+AL+ AT  +GC+ FV    +    LPH +   D +N L +GQ +  A    E++   +EL  G+ ++H    +H SGPN +   R+GLAIRY+ P+ +QL  + R+ AML  G+D   +F  +  P E +  + L L+
Sbjct:   84 ELERIEREWLDADLPLPLNTYKRVNAHLVMPLAARVATDPRVLDVVEGVLGPDIMVWSAEFFIKEPHTAHTVGMHQDLTYWGMGETPDQVTAWIALSPATVESGCMDFV-RGSHKNPILPHKDTYSD-TNLLSRGQEV--AVDVAEKDKTHIELAPGQMSLHHGLTIHGSGPNQSGDRRIGLAIRYLNPNAKQLVAE-RDYAMLARGQDGQSNFVHVEPPTELFSADALALY 310          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: WP_058274630.1 (phytanoyl-CoA dioxygenase family protein [Ruegeria atlantica])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 79/232 (34.05%), Postives = 123/232 (53.02%), Query Frame = 0
Query:   61 DLENAVRPLLEGD-----SDIRPFQSHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLH 288
            +LE   R  L+ D     +  +   +HL +P  A + T   +L+ V  +LGPD++VW  E+  K P +      HQD TY G+    D VT W+AL+ AT  +GC+ FV    +    LPH +   D +N L +GQ +  A    E++   +EL  G+ ++H    +H SGPN +   R+GLAIRY+ P+ +QL  + R+ AML  G+D   +F  +  P E +  + L L+
Sbjct:   43 ELERIEREWLDADLPLPLNTYKRVNAHLVMPLAARVATDPRVLDVVEGVLGPDIMVWSAEFFIKEPHTAHTVGMHQDLTYWGMGETPDQVTAWIALSPATVESGCMDFV-RGSHKNPILPHKDTYSD-TNLLSRGQEV--AVDVAEKDKTHIELAPGQMSLHHGLTIHGSGPNQSGDRRIGLAIRYLNPNAKQLVAE-RDYAMLARGQDGQSNFVHVEPPTELFSADALALY 269          
BLAST of NO07G02570 vs. NCBI_GenBank
Match: OUU56701.1 (hypothetical protein CBC21_07850 [Proteobacteria bacterium TMED61])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 87/218 (39.91%), Postives = 122/218 (55.96%), Query Frame = 0
Query:   58 KSFDLENAVRPLLEGDSDIRPFQSHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVP 276
            + F+      P++ GD + R    HLFLPF+  +    +IL  V SILG DLLVW T + TK P S    A HQD  Y GL+   D VT WVAL+ A+  +GC++F+     + ++  H + PGD +  L +GQ +  A+   E  A    L  G+A++H     HAS PN ++  R+G AIRY+KPS++Q  GQ    A LV G D + HF+L P P
Sbjct:   51 EDFEARYQSHPIV-GDGEFRT-SCHLFLPFLDELTRHPAILAAVSSILGNDLLVWGTSFFTKEPRSPDYVAWHQDLHYWGLD-ARDEVTAWVALSPASVESGCMRFIAAS--HTKEAAHADRPGDGA-MLSRGQEL--ASPVDESRAVNAPLLPGQASLHHGLTFHASLPNRSNDRRIGFAIRYIKPSMRQAGGQAGV-ATLVQGDDSYHHFELAPRP 259          
The following BLAST results are available for this feature:
BLAST of NO07G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_021361587.14.900e-3039.15uncharacterized protein LOC110455660 [Mizuhopecten... [more]
OUU37386.16.400e-3040.37hypothetical protein CBC11_09205 [Proteobacteria b... [more]
OUU40344.16.400e-3040.37hypothetical protein CBC11_03400 [Proteobacteria b... [more]
WP_068333997.11.100e-2937.32phytanoyl-CoA dioxygenase family protein [Ruegeria... [more]
CUH47547.11.400e-2936.36chlorinating enzymes [Ruegeria atlantica][more]
WP_058277251.11.400e-2936.36phytanoyl-CoA dioxygenase family protein [Ruegeria... [more]
PPR63490.11.400e-2939.63hypothetical protein CFH04_00600 [Alphaproteobacte... [more]
CUH44614.13.200e-2934.05chlorinating enzymes [Ruegeria atlantica][more]
WP_058274630.13.200e-2934.05phytanoyl-CoA dioxygenase family protein [Ruegeria... [more]
OUU56701.13.200e-2939.91hypothetical protein CBC21_07850 [Proteobacteria b... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000602NSK000602Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02570.1NO07G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580840gene_2588Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g8gene3434Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02570.1NO07G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02570 ID=NO07G02570|Name=NO07G02570|organism=Nannochloropsis oceanica|type=gene|length=933bp
ATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAATGAGGC
CCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGCAAACCG
CCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGCGTGCCT
TCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCTAGAAAACGCAGTACG
CCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCCACCTCT
TCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTGGAGCAA
GTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGAGTGGCA
CACCAAGCCTCCACTTTCCAAAAAGGGATATGCCCCTCACCAAGACTCCA
CTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGGGTCGCC
TTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCCCATGCG
CAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAGATCCGA
GCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTTGATTTT
GAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCACCATTCA
CGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTTCCCCTC
GAGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAACTAGCA
GGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGAATGGGG
GCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAGAGGGTT
TGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTATATGAGG
CAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGA
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protein sequence of NO07G02570.1

>NO07G02570.1-protein ID=NO07G02570.1-protein|Name=NO07G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MDPNQGFLGPFRAFNEAQAAAYLAQYKDAFGQTAASRHINTRTEPAARVP
SSSPSGAKSFDLENAVRPLLEGDSDIRPFQSHLFLPFVAAIMTSESILEQ
VRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVA
LTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDF
EENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLA
GQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAMQVNYMR
QQQEGQKEEG*
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Synonyms
Publications