NO07G02570.1, NO07G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02570.1
Unique NameNO07G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr7:747178..748110 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:747178..748110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02570.1 vs.
Match: EWM27109.1 (phytanoyl- dioxygenase family protein [Nannochloropsis gaditana])

HSP 1 Score: 332.0 bits (850), Expect = 1.900e-87
Identity = 159/227 (70.04%), Postives = 185/227 (81.50%), Query Frame = 0
Query:   79 FQSHLFLPFVAAIMTSESILEQVRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVALTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDFEENAEFVELQAGEATIHAFRCVHASGPN-TTSSPRVGLAIRYMKPSVQQLAGQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAMQVNYMRQQQE 305
            FQSHL+LPFV AIM++E+IL+QVR++LGPDLLVWFTEWH K P S   Y PHQDSTYAGL P EDVVTVWVALT AT+ NGCL+FVPM  Y+G QLPH+EEPGD +N LL+GQ I    LDF   A  VEL  GEATIHAFRCVHASGPN + +SPRVGLAIRYMKPSV+Q+ G RREGAMLVSG+D++GHFDL P+P EAW   GL LH +EMEAM+VNYM  +++
Sbjct:   59 FQSHLYLPFVVAIMSTEAILKQVRAVLGPDLLVWFTEWHVKRPASSSKYTPHQDSTYAGLVPAEDVVTVWVALTEATRTNGCLEFVPMTEYHGEQLPHVEEPGDSTNLLLRGQRIASEHLDFTAKAVPVELCPGEATIHAFRCVHASGPNRSDASPRVGLAIRYMKPSVRQMQGGRREGAMLVSGQDDFGHFDLQPLPSEAWDRGGLALHAREMEAMRVNYMESRRK 285          
The following BLAST results are available for this feature:
BLAST of NO07G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27109.11.900e-8770.04phytanoyl- dioxygenase family protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02570NO07G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02570.1NO07G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02570.1.cds1NO07G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02570.1 ID=NO07G02570.1|Name=NO07G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAATGAGGC
CCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGCAAACCG
CCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGCGTGCCT
TCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCTAGAAAACGCAGTACG
CCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCCACCTCT
TCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTGGAGCAA
GTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGAGTGGCA
CACCAAGCCTCCACTTTCCAAAAAGGGATATGCCCCTCACCAAGACTCCA
CTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGGGTCGCC
TTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCCCATGCG
CAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAGATCCGA
GCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTTGATTTT
GAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCACCATTCA
CGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTTCCCCTC
GAGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAACTAGCA
GGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGAATGGGG
GCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAGAGGGTT
TGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTATATGAGG
CAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGA
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protein sequence of NO07G02570.1

>NO07G02570.1-protein ID=NO07G02570.1-protein|Name=NO07G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MDPNQGFLGPFRAFNEAQAAAYLAQYKDAFGQTAASRHINTRTEPAARVP
SSSPSGAKSFDLENAVRPLLEGDSDIRPFQSHLFLPFVAAIMTSESILEQ
VRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVA
LTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDF
EENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLA
GQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAMQVNYMR
QQQEGQKEEG*
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mRNA from alignment at chr7:747178..748110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02570.1 ID=NO07G02570.1|Name=NO07G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr7:747178..748110- (Nannochloropsis oceanica)
ATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAATGAGGC CCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGCAAACCG CCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGCGTGCCT TCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCTAGAAAACGCAGTACG CCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCCACCTCT TCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTGGAGCAA GTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGAGTGGCA CACCAAGCCTCCACTTTCCAAAAAGGGATATGCCCCTCACCAAGACTCCA CTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGGGTCGCC TTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCCCATGCG CAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAGATCCGA GCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTTGATTTT GAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCACCATTCA CGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTTCCCCTC GAGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAACTAGCA GGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGAATGGGG GCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAGAGGGTT TGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTATATGAGG CAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGA
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Coding sequence (CDS) from alignment at chr7:747178..748110-

>NO07G02570.1 ID=NO07G02570.1|Name=NO07G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr7:747178..748110- (Nannochloropsis oceanica)
ATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAATGAGGC
CCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGCAAACCG
CCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGCGTGCCT
TCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCTAGAAAACGCAGTACG
CCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCCACCTCT
TCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTGGAGCAA
GTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGAGTGGCA
CACCAAGCCTCCACTTTCCAAAAAGGGATATGCCCCTCACCAAGACTCCA
CTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGGGTCGCC
TTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCCCATGCG
CAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAGATCCGA
GCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTTGATTTT
GAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCACCATTCA
CGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTTCCCCTC
GAGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAACTAGCA
GGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGAATGGGG
GCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAGAGGGTT
TGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTATATGAGG
CAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGA
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Synonyms
Publications