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Properties
| Property Name | Value |
|---|
| Description | C2h2-type zinc finger-containing protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:728436..732582 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003676 | nucleic acid binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR036236 | Znf_C2H2_sf |
| IPR013087 | Znf_C2H2/integrase_DNA-bd |
Homology
BLAST of NO07G02520 vs. NCBI_GenBank
Match: EWM27105.1 (c2h2-type zinc finger-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 214.2 bits (544), Expect = 1.800e-51 Identity = 107/143 (74.83%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 796 PKLFTRVLHGQHVDFLSPDRVLECREGHKHXXXXXXXXXXXXXXXXXXPDLPPSPSTSEKGKLTEKEVGEAQKKCAGEHATKECACVQVYYDGIPHYIIDGKLQRRDESGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTS 939
PKLFTRVLHGQHVDFLSPDRVLECREGHKH GKLTEKEVGEAQKKC GEHAT+ CACVQVYYDGIPHYI+DGKLQRRDE GDLLDLGDFRVLDDDFETFFSSMETLLQEQGRT+
Sbjct: 729 PKLFTRVLHGQHVDFLSPDRVLECREGHKH-----------------------------PGKLTEKEVGEAQKKCPGEHATQACACVQVYYDGIPHYIVDGKLQRRDERGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTN 842
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G02520 ID=NO07G02520|Name=NO07G02520|organism=Nannochloropsis oceanica|type=gene|length=4147bp
TCTTGGAGCTTACTTTGGCGCAATTTACGTGCTCCCTTGACCTCGGACAG
CGAATTTTCCGCAGGCGCTGCGAGTCTTGTTTCATCCGCGCTCCGAAGGC
GCTTCTCCCCCAAGGGGTCGACATGCCATCTCGTCCTCTACGAACAGAGC
AACTCGTTCGTCAATGTCTGTGTGCATGATTTCTGGGGATTTGCTGCCTG
CCGTTGTTGGACGAAGCGAAGGCAATGATACTTCATCCTGGAATCCACAC
ACGCACCACAGCCATCTTCTCATTATGTGGACCACATCATGGGTTTTGCT
GCCGAGCGGCGGGGAACTTATTGCCTTCGCGCCAAAACGCCACTCCCAGG
CGGGTAACAGTCGAGCATGCCTTCATACATAATGCTCAGGCAATTATTCA
ACTCTCACCAGCGTCGACGAGTTAATCGTTGTTACGTTGTTCATAGGGCC
GCATGCACTAAACCTTAGAAGTTTACCAGACGCGCACGCCCCGCATACAG
TCCTCATGACAGTTGGCCACGGAGCGAAGAAAGAAGAAAAGATAGCTGCT
CGCATGTCATCGTCGTCACGGAAGAGGTCGTACCTGCCGGGGGAGGCGGT
CTCCCAAAAAGTTTACGCCGTCGGATGGCATTTTTAAATGCCAACTCGCA
GCGCGCAGCAAAATCGCAGTCTCTCACTCGTCGACCTCCTCACCCCCTGC
AACTTGTCCATCCCCTCCTAATTCAACATTCCTTTCACACCCAACCCGCA
CCCACAGATGCACCCAGGCGAGGTAAGAGGGGATGGCAGCCAAGTGCTGC
CTCCGAACTATACCCAACACCGCCGCTATCAGCAGCAGCAGCAGCAGCAG
GAGCCACCGAGGCACCAGACCAACCTTCCGGAGGACATGGATGGCATAAT
TCCCCGAGCCGCGCCGATGAGAAATCCTCCTCTTGAGCCGGTCCTCGCAG
GGCTTGCATCTCAAAATGGTAGCGGTGACAGTGGTGGCGGCGGCAAGGGA
AAACAAGCCTATCCTCCGGGAGACGGGAGCCATCAGCCATTTTTCATCCA
CGCGCACAACCCGCCACAATTTTCCGTGCTTCCTCCTCCTCCTCCTCCCC
CGCCAGCCGGGGCACAATCGCGCCCCCCACAATTAAACCCTCTCCCAGTT
CCTTCTCTTCCTCTTCCTTCTTGTTCTTCTTCTTATCATTCTTCTTCCAA
CCGTCATTTTGGTTCCCAGCACCCGCCGCCAGTAACTGAAGTGGTCTTGT
CACGGCCACCATCCCCCAGTCCCTCACCACTTCAGCACCTAGAGCAACAG
CAACAACAGCAGAACTACCGCCATAACAGCAGAAACGACAACAACAACAT
TATCGACGTTCCGTTCTCCCATCTGTCCCCTGCTCCCCGTGCACAAGCCT
TCTTCCGCAATCCCCCTCCCCAGGTAGCTCTTCCCCCTCACATCTACAAC
CCAATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACCACTATCGCA
AGAAGAATTTGGGCAACAGCAGCTGCAGCGCCCACACAAGCAACGCGAGG
ACTCCAGGCGGAGAAAGAAAGGCAAAGCTGGCCCCTCTTCATCACCTTCC
TCTTCCTCATATTGCCCCCCCCCCTTTTCCTCCTCTCCCGGCGCCCTCTC
AGATTCCAACTTAACCACCATCAGCCACACCAAAAGTAGCAAAACAACAG
CAACAGCAGCAACTACCGCTGTACCATCCATCCGTGGGGAGTCTTCAAAC
GCCGAGGACGACAATTTGAAAGCTAACAGCTCCATCCTCCCCGATGGCAC
GTTTTCCTGCAACCACTGCCAGAAAACATTCACCCTTAAGGGAAATTTGA
AACGACACCTCCTCACACACGGGGGCGTCCGTCCCTTCTCCTGCTCCATC
TGCGAAAAAACCTTCTCGCGGAAAGCCGACCTGGAAATCCACGTCCGGGT
CCACACAGGCGAGAGACCCTACACCTGCCCCTGGATGAACTGCGGGCGGC
AATTCGCCCGGATTTCTGACTTGAGGTCTCACGAGCGAACACACAGTGGC
TTGAAGGGTTTTTTGTGTCCCTATTCGGGGTGTGGGAGGCGGTTTGCAAG
GAGATACGACATGAACAAGCATGCGAAGGTGCACGAGAAACGTGGGGAGA
CACCGGGGAAGAGCCAGGAGCAGGGCCGATGGGAGGAAGAAATGAAGGTG
TGGGGCGTCCAGGCGAGGGAGAAGGAGAGGAATATTGGGGGGAAGGGAGA
GATGGGAGTCAAAGGCTTTGGTTTGACGTCCATGCCCTCCATCCGTCCTC
CTCACATCAATGTTTTGCCTGCCAAGAATCATGCTTCCCTCTCCCCCTTT
CCTTCTCCTTCCTCTCCCTCGCATTCACCGAATTCGCCCGCTTCCAAAAA
GCGAGGCCGTGGAGTGCGGGATGCAGCAGCATCATCAGTAATGGCAGCAG
CAGCAGCAGCAGGTGGTGGTGGTGGAGGCGGAGGAGGAGCACCTGTTGCA
ATAGAAGGAGTGGCGGCAGGACGTACGACTGAATCAACCCCTTCTCTTGC
AACCTCACACTTCACTACAGCTGCAGCTGCGGTAGGAGCATTGGATGAAT
GTAGCAGCAGTATCAGCAGCAGCAGAAGCAAGCAATCGTATGGTGCAGCA
GGGCAGTTGCAGCTATGGCAACAGTACCAGCACCAGCGTGATTCAAAGAA
TCACCACCACCGCTGTCAACACCACCAGCACCACGAGCAGGCCCATCATC
ATCATGAGGAAAAGGAAGGTGTAAGGGCAGAAGGAGAAAGCGTAGGGGGT
GGAGGAGAGGGAGGAGGCGAAGGACGGGGAGATGCAGGAGGAGAGGCCAA
GAGGGCGTATCTAGCCCGCCTTAACACCACACATCAACCTCCCTGCATCT
CCTCCCTCACTGACTTTGCCGCCAGAGGAATGCAAGCCATGCGCTTAAGC
CCCGATGGCACAGCAGCAGGAGCAGGTAGAGGAGCAGGGGAAGGAAGGCT
TATCGCCGCCGCCGCTGCCGCTGCCGCCGCTGCAGCTGAAGGAGCAGGAG
CAGGAGGGATGGGAGGGGCAGGAGCAGTAGCAGGAGCAGGAGGGGTGGGA
GGGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGCAACCGAAACT
GTTTACACGCGTGCTTCACGGGCAGCATGTCGACTTCCTCTCGCCCGACC
GTGTCCTCGAATGTCGAGAAGGCCACAAACACGACGACCCTCCTTCTCCT
CCGCCGCCTCCTGTCGCTGCCCTTCCCCCCCCTCTCCCCGACTTGCCTCC
CTCCCCCTCCACCTCCGAAAAGGGGAAACTGACCGAAAAAGAAGTAGGGG
AGGCACAAAAGAAGTGCGCAGGAGAACATGCAACAAAAGAGTGTGCATGT
GTCCAGGTCTACTATGACGGGATCCCACATTACATCATTGATGGGAAGCT
GCAACGGAGGGACGAAAGTGGAGACTTACTTGATTTGGGAGATTTTCGTG
TGTTGGACGATGATTTTGAAACCTTTTTCTCATCAAgtaagcttgctctg
tctttaaagggaggggagatgatgcgcgcggctcaaatttcgtttctcgt
gctctgaattacatgttcttatcgtgcttgacactttttgcatcacatct
cacaactcctccctccctctttccatttcccccttcgctttcctaaactc
acagTGGAGACTCTCCTGCAAGAACAAGGTCGGACAAGCTATGTAGGTAG
GTAGAGAGTGGGAAAGGGCGTGCCAAGGTATACTGACATATGCTCAAAAG
CACACTGACATGAACAATAGCGGGCAGCTAGAGGAAATTAACTCTGCCTG
TAGTCAAATTGCGTCATGGTAGGAAGGCCAGAGCGAGGGAAGAGAGTGGA
GAGGAGAGTGGCCGATGTTGTATGGAGAGAGTGATGGAACAATATGAGAA
TTGGCTGGTTAACCGCCGCCTAAATTGATATTAATAACACATATATATGT
ATATATGTATATATATATGTGTGTGTATACATGTATATGTATGTGGGACT
GGAAGAATTTTGCAGTAGGAAGAGATTTAGAAAAGCACGGAGAAAACGAC
ACATAGAGTGGCTTTGAGAAGGATAAAAAGGATTTCCCCTCTTGCAG back to topprotein sequence of NO07G02520.1 >NO07G02520.1-protein ID=NO07G02520.1-protein|Name=NO07G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=943bp
MHPGEVRGDGSQVLPPNYTQHRRYQQQQQQQEPPRHQTNLPEDMDGIIPR
AAPMRNPPLEPVLAGLASQNGSGDSGGGGKGKQAYPPGDGSHQPFFIHAH
NPPQFSVLPPPPPPPPAGAQSRPPQLNPLPVPSLPLPSCSSSYHSSSNRH
FGSQHPPPVTEVVLSRPPSPSPSPLQHLEQQQQQQNYRHNSRNDNNNIID
VPFSHLSPAPRAQAFFRNPPPQVALPPHIYNPMQQQQQQQQQQQPLSQEE
FGQQQLQRPHKQREDSRRRKKGKAGPSSSPSSSSYCPPPFSSSPGALSDS
NLTTISHTKSSKTTATAATTAVPSIRGESSNAEDDNLKANSSILPDGTFS
CNHCQKTFTLKGNLKRHLLTHGGVRPFSCSICEKTFSRKADLEIHVRVHT
GERPYTCPWMNCGRQFARISDLRSHERTHSGLKGFLCPYSGCGRRFARRY
DMNKHAKVHEKRGETPGKSQEQGRWEEEMKVWGVQAREKERNIGGKGEMG
VKGFGLTSMPSIRPPHINVLPAKNHASLSPFPSPSSPSHSPNSPASKKRG
RGVRDAAASSVMAAAAAAGGGGGGGGGAPVAIEGVAAGRTTESTPSLATS
HFTTAAAAVGALDECSSSISSSRSKQSYGAAGQLQLWQQYQHQRDSKNHH
HRCQHHQHHEQAHHHHEEKEGVRAEGESVGGGGEGGGEGRGDAGGEAKRA
YLARLNTTHQPPCISSLTDFAARGMQAMRLSPDGTAAGAGRGAGEGRLIA
AAAAAAAAAAEGAGAGGMGGAGAVAGAGGVGGAGAGAGAGAGAGQPKLFT
RVLHGQHVDFLSPDRVLECREGHKHDDPPSPPPPPVAALPPPLPDLPPSP
STSEKGKLTEKEVGEAQKKCAGEHATKECACVQVYYDGIPHYIIDGKLQR
RDESGDLLDLGDFRVLDDDFETFFSSMETLLQEQGRTSYVGR* back to top
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