NO07G02300, NO07G02300 (gene) Nannochloropsis oceanica

Overview
NameNO07G02300
Unique NameNO07G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr7:682048..683634 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptide methionine sulfoxide reductase b5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:682048..683634 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0033743peptide-methionine (R)-S-oxide reductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0030091protein repair
GO:0055114oxidation-reduction process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR028427Met_Sox_Rdtase
IPR002579Met_Sox_Rdtase_MsrB
Homology
BLAST of NO07G02300 vs. NCBI_GenBank
Match: EWM27229.1 (peptide methionine sulfoxide reductase b5 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.400e-102
Identity = 187/236 (79.24%), Postives = 197/236 (83.47%), Query Frame = 0
Query:   38 SMRAFPPTFTITTLSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPRMLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGKDVIQPCTYEGPVYE 274
            SMR      TI TLS+VQ+A  S RGASGFV   A  K F    A+ SA  A SR  T   P MLF+RMF  T A DPATNLA KPALTK+KTE+EWKQILSPTAFKVLRRKATEPRKV +AKGGWDDH AKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRD+DGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGF+PEG D +QPCTYEGPVYE
Sbjct:   20 SMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTT--VPSMLFSRMF-ATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: CBJ49291.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57
Identity = 107/170 (62.94%), Postives = 125/170 (73.53%), Query Frame = 0
Query:  107 FGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGK----DVIQPCTYEGPVY 273
            F   PA    T LA +PAL K K + +WK+ L    ++VLR KATEP  V  A GG+DD   KGTYVC GC+TPLY  + KFDCGCGWPGFWTNI+DAVYE++D+DG RCEILCS C GHLGHVFR EGFGNP P+ERHCVNSVS+ FIPEGK    D ++ CTY G V+
Sbjct:   25 FWKPPATSKHTRLAKEPALDKCKPDADWKEQLQQNTYQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVE-CTYTGRVF 193          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: OLP98216.1 (Peptide methionine sulfoxide reductase B5 [Symbiodinium microadriaticum])

HSP 1 Score: 187.6 bits (475), Expect = 5.200e-44
Identity = 92/163 (56.44%), Postives = 107/163 (65.64%), Query Frame = 0
Query:  109 GTPAPDPA----------TNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGC-----KTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIP 257
            G PA DPA          T+L          +E EW + L    +KVLR KATEP        G+DDH   G Y+C+GC     + PLYTS+MKFDCGCGWPGFWTN+KD VYEQRD+DG RCEILCS+CDGHLGHVFR EGFG    DERHCVNS+S+ F+P
Sbjct:    2 GEPARDPAAYEVPKSNGSTHLGKASTAAVRLSEKEWSEKLRTNMWKVLRNKATEPGHRITFPQGFDDHKDSGVYLCSGCYFAGLQVPLYTSSMKFDCGCGWPGFWTNVKDEVYEQRDADGRRCEILCSKCDGHLGHVFRGEGFGY-STDERHCVNSLSLVFLP 163          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: XP_015663566.1 (hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris] >KPA85127.1 hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris])

HSP 1 Score: 181.8 bits (460), Expect = 2.900e-42
Identity = 86/151 (56.95%), Postives = 104/151 (68.87%), Query Frame = 0
Query:  113 PDPATNLA--TKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIP-EGKD 261
            P  ATN A   +   TK K E EW+  LSP  + +LR K T+P       G +DD   +G YVC  CKTPLYTSAMKF CGCGWPGFW +I+ AV EQ D DG R EI+C+ C+ HLGH+FR+EGF NPPP+ERHCVNS S+ FIP +GK+
Sbjct:   47 PSSATNCAQPNEENGTKDKPESEWRATLSPAEYHILREKGTDP-----VGGKYDDLYDEGEYVCAACKTPLYTSAMKFACGCGWPGFWDSIQKAVREQPDKDGRRVEIVCNACNSHLGHIFRHEGFSNPPPNERHCVNSTSILFIPAQGKN 192          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: KPI84299.1 (hypothetical protein ABL78_6642 [Leptomonas seymouri])

HSP 1 Score: 178.7 bits (452), Expect = 2.400e-41
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 0
Query:  115 PATNLA-TKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFI 256
            P TN A      +K K E EW+ IL+P  +++LR K T+P       G +D+   +G YVCT CKTPLYTSAMKF CGCGWPGFW  I  AV EQ D DG R EI+C+ C+ HLGH+FRNEGF NPPP+ERHCVNS S+ F+
Sbjct:    4 PKTNCAQANDGGSKDKPEAEWRAILTPAEYRILREKGTDP-----VGGKYDNFFGEGEYVCTACKTPLYTSAMKFACGCGWPGFWDCIPKAVREQPDKDGRRVEIVCNACNSHLGHIFRNEGFSNPPPNERHCVNSTSITFV 140          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: CCW62236.1 (unnamed protein product [Phytomonas sp. isolate EM1])

HSP 1 Score: 170.6 bits (431), Expect = 6.600e-39
Identity = 75/124 (60.48%), Postives = 91/124 (73.39%), Query Frame = 0
Query:  134 WKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPE 258
            W+  L+ + ++VLRRKAT+PR      G +D+    G YVC GC TPLY SAMKF CGCGWPGFW  +  AV E+ D+DG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVNS S+ FIP+
Sbjct:   31 WRAKLTASQYRVLRRKATDPR-----GGHYDNFFGDGMYVCAGCGTPLYASAMKFACGCGWPGFWDCLPKAVREEPDADGMRTEILCNACNGHLGHVFRGEGFKNPPPNERHCVNSSSIMFIPK 149          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: EPY39141.1 (hypothetical protein AGDE_04788 [Angomonas deanei] >EPY41440.1 hypothetical protein AGDE_02484 [Angomonas deanei])

HSP 1 Score: 164.9 bits (416), Expect = 3.600e-37
Identity = 78/146 (53.42%), Postives = 95/146 (65.07%), Query Frame = 0
Query:  117 TNLATKPALTKIKT--EDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGKD 261
            TN A+      +K   + EWK++LSP AF +LR+K T+ R      G  D   A G Y C  C   LYTS MKFDCGCGWPGFW  +  AV E++D+DG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN  S+ F P  K+
Sbjct:   22 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDAR-----HGPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEPMSKE 162          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: EPY40285.1 (hypothetical protein AGDE_03643 [Angomonas deanei])

HSP 1 Score: 164.9 bits (416), Expect = 3.600e-37
Identity = 78/146 (53.42%), Postives = 95/146 (65.07%), Query Frame = 0
Query:  117 TNLATKPALTKIKT--EDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGKD 261
            TN A+      +K   + EWK++LSP AF +LR+K T+ R      G  D   A G Y C  C   LYTS MKFDCGCGWPGFW  +  AV E++D+DG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN  S+ F P  K+
Sbjct:    3 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDAR-----HGPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEPMSKE 143          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: CCW68573.1 (unnamed protein product [Phytomonas sp. isolate Hart1])

HSP 1 Score: 164.9 bits (416), Expect = 3.600e-37
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 0
Query:   78 LFTQAAQSANAAISRKRTAGAPRMLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPE 258
            +F+ AA S++  IS   + GA         G T    P     +K        +  W+  L+ T ++VLR+K+T+PR      G +DD    G YVC GC TPLYTS MKF CGCGWPGFW  +  AV E+ D+DG R EI+C+ C+GHLGHVFR+EGF NP P+ERHCVN+ S+ FIP+
Sbjct:   24 VFSGAASSSSRLISSMNSNGA---------GSTHCAQPNEKDGSKDI-----GDLAWRAKLNTTQYRVLRQKSTDPR-----GGSYDDFFGDGIYVCAGCDTPLYTSTMKFACGCGWPGFWDCLPKAVREEPDADGRRTEIICNACNGHLGHVFRHEGFKNPLPNERHCVNNSSIKFIPK 184          
BLAST of NO07G02300 vs. NCBI_GenBank
Match: XP_010700621.1 (peptide methionine sulfoxide reductase, putative [Leishmania panamensis] >AIN99914.1 peptide methionine sulfoxide reductase, putative [Leishmania panamensis])

HSP 1 Score: 161.4 bits (407), Expect = 4.000e-36
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 0
Query:  133 EWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIP 257
            EW+++L+   + +LR K T+P       G +DD   +G YVC GCKTPLY S+MKF CGCGWPGF+  I   V EQ D DG R EI+C+ C+GHLGHVFRNEGF NPPP+ERHCVN+ S+   P
Sbjct:   24 EWRRVLTSQEYYILREKGTDP-----VGGKYDDVFEEGVYVCAGCKTPLYLSSMKFACGCGWPGFYDCIPKRVREQPDRDGHRVEIVCNACNGHLGHVFRNEGFRNPPPNERHCVNNTSIVLQP 142          
The following BLAST results are available for this feature:
BLAST of NO07G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27229.11.400e-10279.24peptide methionine sulfoxide reductase b5 [Nannoch... [more]
CBJ49291.11.100e-5762.94conserved unknown protein [Ectocarpus siliculosus][more]
OLP98216.15.200e-4456.44Peptide methionine sulfoxide reductase B5 [Symbiod... [more]
XP_015663566.12.900e-4256.95hypothetical protein ABB37_01513 [Leptomonas pyrrh... [more]
KPI84299.12.400e-4157.04hypothetical protein ABL78_6642 [Leptomonas seymou... [more]
CCW62236.16.600e-3960.48unnamed protein product [Phytomonas sp. isolate EM... [more]
EPY39141.13.600e-3753.42hypothetical protein AGDE_04788 [Angomonas deanei]... [more]
EPY40285.13.600e-3753.42hypothetical protein AGDE_03643 [Angomonas deanei][more]
CCW68573.13.600e-3746.67unnamed protein product [Phytomonas sp. isolate Ha... [more]
XP_010700621.14.000e-3656.45peptide methionine sulfoxide reductase, putative [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000655NSK000655Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02300.1NO07G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100010g75gene3387Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02300.1NO07G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02300 ID=NO07G02300|Name=NO07G02300|organism=Nannochloropsis oceanica|type=gene|length=1587bp
CGTGTGCGCATATTTCGGGTGGGTGTAAGTGTCCAATCTGGGGCATTAGT
ATCCTGCTTTTGCGAGGTCGTCGTCCCCAGTACCTCCCTTTTTTGCTTGC
TATCGCTCGCTCATCGCTAGACCGTGATATCGAGCAGGTCTGACGACACG
ATCAGAACTTCGATTCATCACAATCTGTTCACAAAAGCCCACAAGCTCAA
GCACAGGTCGGTGGCGCGTTCTGATGGGAACGACCGAGGAGCAGGATACT
GACCTTGGCCATGCCGTCGACTTCACCTGCTACTGACACGGTCTTCAGCC
TCATCGTCGTTGCCTGAGCCTATTCCTACACGCCCTTGGATGCCACTCTT
CATGTCATGGCACATTTGCCATCCTTGCAATTGAAGGAACGCTTGATGAC
TGCTAGTGAAGCCATAATTGGCTTGGCCGCACGGAGATGGGATGTTACCC
AAGGTGGATTCTGCGCTGACGGCAGATAATTTCGACGCGTCATTTTTTAT
GTTTGTGTCGTCCCAATCACATGACTGCATTTGCCTGGGAAGACCATTGC
ACCTTCAATCTTTGAGTAGATGCCATTGCATTGCACAAGTGCCCGGCCGC
ACCCGCACTGCAGGCGGCGACCTCCGTCTCTTGCTCACCCTCCTTTCCAT
ACATCCACATCGACAATATTTACCATACAGAGCATGCGGGCTTTCCCCCC
CACTTTTACCATAACGACGCTCAGCCTCGTTCAGATCGCCGTGTTGTCTA
CTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTGCCGCTTCCAAAGCTTTC
CTCTTCACGCAAGCCGCCCAATCGGCCAACGCCGCTATCTCCCGTAAGCG
CACTGCCGGTGCGCCTCGAATGCTCTTTACCCGCATGTTTGGTGGGACAC
CAGCGCCGGACCCGGCCACTAATCTGGCTACTAAGCCTGCCTTGACCAAG
ATTAAAACCGAGGACGAATGGAAGCAAATTCTCTCGCCCACGGCCTTCAA
GGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAAGGTGAACATGGCAAAGG
GTGGATGGGACGATCACACAGCCAAGGGAACGTACGTCTGCACGGGATGC
AAGACTCCTTTGTACACCTCGGCGATGAAGTTTGACTGTGGGTGTGGATG
GCCCGGGTTTTGGACCAACATCAAGGATGCCGTATATGAGCAGCGTGATT
CGGATGGCTTCCGTTGCGAGATTCTGTGCTCGGAGTGCGATGGACACTTG
GGCCATGTTTTCCGAAATGAGGGATTCGGGAACCCGCCTCCTGATGAGCG
GCACTGTGTGAATTCGGTGTCGGTGGGCTTTATTCCGGAGGGAAAGGATG
TAATCCAGCCTTGCACCTATGAGGGGCCTGTTTACGAGTAGGTGGGGGGG
TAAGCTTCTGGTAGCGAATGAATGATAAGATTGGAAGCAGATGGAAAGGA
AGAGGCCGGGTGGACGGCGAGAAGCAAGAGATATCGGCAGCTGAGGCTGG
GAATCCCGAGGCTTGCTCTTCTTTTCCTCTTGCTCTTTTCGGGGCACAAA
ACACGCAATCTATGCAAGCGGTAGAAAAGACATTATG
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protein sequence of NO07G02300.1

>NO07G02300.1-protein ID=NO07G02300.1-protein|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPLHCTSARPHPHCRRRPPSLAHPPFHTSTSTIFTIQSMRAFPPTFTITT
LSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPR
MLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKA
TEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTN
IKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSV
SVGFIPEGKDVIQPCTYEGPVYE*
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Synonyms
Publications