NO07G02300.1, NO07G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02300.1
Unique NameNO07G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr7:682048..683634 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:682048..683634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02300.1 vs.
Match: EWM27229.1 (peptide methionine sulfoxide reductase b5 [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.400e-102
Identity = 187/236 (79.24%), Postives = 197/236 (83.47%), Query Frame = 0
Query:   38 SMRAFPPTFTITTLSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPRMLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGKDVIQPCTYEGPVYE 274
            SMR      TI TLS+VQ+A  S RGASGFV   A  K F    A+ SA  A SR  T   P MLF+RMF  T A DPATNLA KPALTK+KTE+EWKQILSPTAFKVLRRKATEPRKV +AKGGWDDH AKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRD+DGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGF+PEG D +QPCTYEGPVYE
Sbjct:   20 SMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTV--PSMLFSRMFA-TQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252          
The following BLAST results are available for this feature:
BLAST of NO07G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27229.11.400e-10279.24peptide methionine sulfoxide reductase b5 [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02300NO07G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02300.1NO07G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02300.1.cds1NO07G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
CGTGTGCGCATATTTCGGGTGGGTGTAAGTGTCCAATCTGGGGCATTAGT
ATCCTGCTTTTGCGAGGTCGTCGTCCCCAGTACCTCCCTTTTTTGCTTGC
TATCGCTCGCTCATCGCTAGACCGTGATATCGAGCAGGTCTGACGACACG
ATCAGAACTTCGATTCATCACAATCTGTTCACAAAAGCCCACAAGCTCAA
GCACAGGTCGGTGGCGCGTTCTGATGGGAACGACCGAGGAGCAGGATACT
GACCTTGGCCATGCCGTCGACTTCACCTGCTACTGACACGGTCTTCAGCC
TCATCGTCGTTGCCTGAGCCTATTCCTACACGCCCTTGGATGCCACTCTT
CATGTCATGGCACATTTGCCATCCTTGCAATTGAAGGAACGCTTGATGAC
TGCTAGTGAAGCCATAATTGGCTTGGCCGCACGGAGATGGGATGTTACCC
AAGGTGGATTCTGCGCTGACGGCAGATAATTTCGACGCGTCATTTTTTAT
GTTTGTGTCGTCCCAATCACATGACTGCATTTGCCTGGGAAGACCATTGC
ACCTTCAATCTTTGAGTAGATGCCATTGCATTGCACAAGTGCCCGGCCGC
ACCCGCACTGCAGGCGGCGACCTCCGTCTCTTGCTCACCCTCCTTTCCAT
ACATCCACATCGACAATATTTACCATACAGAGCATGCGGGCTTTCCCCCC
CACTTTTACCATAACGACGCTCAGCCTCGTTCAGATCGCCGTGTTGTCTA
CTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTGCCGCTTCCAAAGCTTTC
CTCTTCACGCAAGCCGCCCAATCGGCCAACGCCGCTATCTCCCGTAAGCG
CACTGCCGGTGCGCCTCGAATGCTCTTTACCCGCATGTTTGGTGGGACAC
CAGCGCCGGACCCGGCCACTAATCTGGCTACTAAGCCTGCCTTGACCAAG
ATTAAAACCGAGGACGAATGGAAGCAAATTCTCTCGCCCACGGCCTTCAA
GGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAAGGTGAACATGGCAAAGG
GTGGATGGGACGATCACACAGCCAAGGGAACGTACGTCTGCACGGGATGC
AAGACTCCTTTGTACACCTCGGCGATGAAGTTTGACTGTGGGTGTGGATG
GCCCGGGTTTTGGACCAACATCAAGGATGCCGTATATGAGCAGCGTGATT
CGGATGGCTTCCGTTGCGAGATTCTGTGCTCGGAGTGCGATGGACACTTG
GGCCATGTTTTCCGAAATGAGGGATTCGGGAACCCGCCTCCTGATGAGCG
GCACTGTGTGAATTCGGTGTCGGTGGGCTTTATTCCGGAGGGAAAGGATG
TAATCCAGCCTTGCACCTATGAGGGGCCTGTTTACGAGTAGGTGGGGGGG
TAAGCTTCTGGTAGCGAATGAATGATAAGATTGGAAGCAGATGGAAAGGA
AGAGGCCGGGTGGACGGCGAGAAGCAAGAGATATCGGCAGCTGAGGCTGG
GAATCCCGAGGCTTGCTCTTCTTTTCCTCTTGCTCTTTTCGGGGCACAAA
ACACGCAATCTATGCAAGCGGTAGAAAAGACATTATG
back to top

protein sequence of NO07G02300.1

>NO07G02300.1-protein ID=NO07G02300.1-protein|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPLHCTSARPHPHCRRRPPSLAHPPFHTSTSTIFTIQSMRAFPPTFTITT
LSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPR
MLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKA
TEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTN
IKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSV
SVGFIPEGKDVIQPCTYEGPVYE*
back to top

mRNA from alignment at chr7:682048..683634+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at chr7:682048..683634+ (Nannochloropsis oceanica)
CGTGTGCGCATATTTCGGGTGGGTGTAAGTGTCCAATCTGGGGCATTAGT ATCCTGCTTTTGCGAGGTCGTCGTCCCCAGTACCTCCCTTTTTTGCTTGC TATCGCTCGCTCATCGCTAGACCGTGATATCGAGCAGGTCTGACGACACG ATCAGAACTTCGATTCATCACAATCTGTTCACAAAAGCCCACAAGCTCAA GCACAGGTCGGTGGCGCGTTCTGATGGGAACGACCGAGGAGCAGGATACT GACCTTGGCCATGCCGTCGACTTCACCTGCTACTGACACGGTCTTCAGCC TCATCGTCGTTGCCTGAGCCTATTCCTACACGCCCTTGGATGCCACTCTT CATGTCATGGCACATTTGCCATCCTTGCAATTGAAGGAACGCTTGATGAC TGCTAGTGAAGCCATAATTGGCTTGGCCGCACGGAGATGGGATGTTACCC AAGGTGGATTCTGCGCTGACGGCAGATAATTTCGACGCGTCATTTTTTAT GTTTGTGTCGTCCCAATCACATGACTGCATTTGCCTGGGAAGACCATTGC ACCTTCAATCTTTGAGTAGATGCCATTGCATTGCACAAGTGCCCGGCCGC ACCCGCACTGCAGGCGGCGACCTCCGTCTCTTGCTCACCCTCCTTTCCAT ACATCCACATCGACAATATTTACCATACAGAGCATGCGGGCTTTCCCCCC CACTTTTACCATAACGACGCTCAGCCTCGTTCAGATCGCCGTGTTGTCTA CTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTGCCGCTTCCAAAGCTTTC CTCTTCACGCAAGCCGCCCAATCGGCCAACGCCGCTATCTCCCGTAAGCG CACTGCCGGTGCGCCTCGAATGCTCTTTACCCGCATGTTTGGTGGGACAC CAGCGCCGGACCCGGCCACTAATCTGGCTACTAAGCCTGCCTTGACCAAG ATTAAAACCGAGGACGAATGGAAGCAAATTCTCTCGCCCACGGCCTTCAA GGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAAGGTGAACATGGCAAAGG GTGGATGGGACGATCACACAGCCAAGGGAACGTACGTCTGCACGGGATGC AAGACTCCTTTGTACACCTCGGCGATGAAGTTTGACTGTGGGTGTGGATG GCCCGGGTTTTGGACCAACATCAAGGATGCCGTATATGAGCAGCGTGATT CGGATGGCTTCCGTTGCGAGATTCTGTGCTCGGAGTGCGATGGACACTTG GGCCATGTTTTCCGAAATGAGGGATTCGGGAACCCGCCTCCTGATGAGCG GCACTGTGTGAATTCGGTGTCGGTGGGCTTTATTCCGGAGGGAAAGGATG TAATCCAGCCTTGCACCTATGAGGGGCCTGTTTACGAGTAGGTGGGGGGG TAAGCTTCTGGTAGCGAATGAATGATAAGATTGGAAGCAGATGGAAAGGA AGAGGCCGGGTGGACGGCGAGAAGCAAGAGATATCGGCAGCTGAGGCTGG GAATCCCGAGGCTTGCTCTTCTTTTCCTCTTGCTCTTTTCGGGGCACAAA ACACGCAATCTATGCAAGCGGTAGAAAAGACATTATG
back to top

Coding sequence (CDS) from alignment at chr7:682048..683634+

>NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:682048..683634+ (Nannochloropsis oceanica)
ATGCCATTGCATTGCACAAGTGCCCGGCCGCACCCGCACTGCAGGCGGCG
ACCTCCGTCTCTTGCTCACCCTCCTTTCCATACATCCACATCGACAATAT
TTACCATACAGAGCATGCGGGCTTTCCCCCCCACTTTTACCATAACGACG
CTCAGCCTCGTTCAGATCGCCGTGTTGTCTACTCGCGGAGCCAGCGGATT
TGTTGTGCCAGCTGCCGCTTCCAAAGCTTTCCTCTTCACGCAAGCCGCCC
AATCGGCCAACGCCGCTATCTCCCGTAAGCGCACTGCCGGTGCGCCTCGA
ATGCTCTTTACCCGCATGTTTGGTGGGACACCAGCGCCGGACCCGGCCAC
TAATCTGGCTACTAAGCCTGCCTTGACCAAGATTAAAACCGAGGACGAAT
GGAAGCAAATTCTCTCGCCCACGGCCTTCAAGGTGCTCCGTCGCAAGGCT
ACCGAGCCTCGTAAGGTGAACATGGCAAAGGGTGGATGGGACGATCACAC
AGCCAAGGGAACGTACGTCTGCACGGGATGCAAGACTCCTTTGTACACCT
CGGCGATGAAGTTTGACTGTGGGTGTGGATGGCCCGGGTTTTGGACCAAC
ATCAAGGATGCCGTATATGAGCAGCGTGATTCGGATGGCTTCCGTTGCGA
GATTCTGTGCTCGGAGTGCGATGGACACTTGGGCCATGTTTTCCGAAATG
AGGGATTCGGGAACCCGCCTCCTGATGAGCGGCACTGTGTGAATTCGGTG
TCGGTGGGCTTTATTCCGGAGGGAAAGGATGTAATCCAGCCTTGCACCTA
TGAGGGGCCTGTTTACGAGTAG
back to top
Synonyms
Publications