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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:682048..683634 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02300.1 vs.
Match: EWM27229.1 (peptide methionine sulfoxide reductase b5 [Nannochloropsis gaditana]) HSP 1 Score: 382.1 bits (980), Expect = 1.400e-102 Identity = 187/236 (79.24%), Postives = 197/236 (83.47%), Query Frame = 0
Query: 38 SMRAFPPTFTITTLSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPRMLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFIPEGKDVIQPCTYEGPVYE 274
SMR TI TLS+VQ+A S RGASGFV A K F A+ SA A SR T P MLF+RMF T A DPATNLA KPALTK+KTE+EWKQILSPTAFKVLRRKATEPRKV +AKGGWDDH AKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRD+DGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGF+PEG D +QPCTYEGPVYE
Sbjct: 20 SMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTV--PSMLFSRMFA-TQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp CGTGTGCGCATATTTCGGGTGGGTGTAAGTGTCCAATCTGGGGCATTAGT ATCCTGCTTTTGCGAGGTCGTCGTCCCCAGTACCTCCCTTTTTTGCTTGC TATCGCTCGCTCATCGCTAGACCGTGATATCGAGCAGGTCTGACGACACG ATCAGAACTTCGATTCATCACAATCTGTTCACAAAAGCCCACAAGCTCAA GCACAGGTCGGTGGCGCGTTCTGATGGGAACGACCGAGGAGCAGGATACT GACCTTGGCCATGCCGTCGACTTCACCTGCTACTGACACGGTCTTCAGCC TCATCGTCGTTGCCTGAGCCTATTCCTACACGCCCTTGGATGCCACTCTT CATGTCATGGCACATTTGCCATCCTTGCAATTGAAGGAACGCTTGATGAC TGCTAGTGAAGCCATAATTGGCTTGGCCGCACGGAGATGGGATGTTACCC AAGGTGGATTCTGCGCTGACGGCAGATAATTTCGACGCGTCATTTTTTAT GTTTGTGTCGTCCCAATCACATGACTGCATTTGCCTGGGAAGACCATTGC ACCTTCAATCTTTGAGTAGATGCCATTGCATTGCACAAGTGCCCGGCCGC ACCCGCACTGCAGGCGGCGACCTCCGTCTCTTGCTCACCCTCCTTTCCAT ACATCCACATCGACAATATTTACCATACAGAGCATGCGGGCTTTCCCCCC CACTTTTACCATAACGACGCTCAGCCTCGTTCAGATCGCCGTGTTGTCTA CTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTGCCGCTTCCAAAGCTTTC CTCTTCACGCAAGCCGCCCAATCGGCCAACGCCGCTATCTCCCGTAAGCG CACTGCCGGTGCGCCTCGAATGCTCTTTACCCGCATGTTTGGTGGGACAC CAGCGCCGGACCCGGCCACTAATCTGGCTACTAAGCCTGCCTTGACCAAG ATTAAAACCGAGGACGAATGGAAGCAAATTCTCTCGCCCACGGCCTTCAA GGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAAGGTGAACATGGCAAAGG GTGGATGGGACGATCACACAGCCAAGGGAACGTACGTCTGCACGGGATGC AAGACTCCTTTGTACACCTCGGCGATGAAGTTTGACTGTGGGTGTGGATG GCCCGGGTTTTGGACCAACATCAAGGATGCCGTATATGAGCAGCGTGATT CGGATGGCTTCCGTTGCGAGATTCTGTGCTCGGAGTGCGATGGACACTTG GGCCATGTTTTCCGAAATGAGGGATTCGGGAACCCGCCTCCTGATGAGCG GCACTGTGTGAATTCGGTGTCGGTGGGCTTTATTCCGGAGGGAAAGGATG TAATCCAGCCTTGCACCTATGAGGGGCCTGTTTACGAGTAGGTGGGGGGG TAAGCTTCTGGTAGCGAATGAATGATAAGATTGGAAGCAGATGGAAAGGA AGAGGCCGGGTGGACGGCGAGAAGCAAGAGATATCGGCAGCTGAGGCTGG GAATCCCGAGGCTTGCTCTTCTTTTCCTCTTGCTCTTTTCGGGGCACAAA ACACGCAATCTATGCAAGCGGTAGAAAAGACATTATG back to topprotein sequence of NO07G02300.1 >NO07G02300.1-protein ID=NO07G02300.1-protein|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp MPLHCTSARPHPHCRRRPPSLAHPPFHTSTSTIFTIQSMRAFPPTFTITT LSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANAAISRKRTAGAPR MLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQILSPTAFKVLRRKA TEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTN IKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSV SVGFIPEGKDVIQPCTYEGPVYE* back to topmRNA from alignment at chr7:682048..683634+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at chr7:682048..683634+ (Nannochloropsis oceanica) CGTGTGCGCATATTTCGGGTGGGTGTAAGTGTCCAATCTGGGGCATTAGT
ATCCTGCTTTTGCGAGGTCGTCGTCCCCAGTACCTCCCTTTTTTGCTTGC
TATCGCTCGCTCATCGCTAGACCGTGATATCGAGCAGGTCTGACGACACG
ATCAGAACTTCGATTCATCACAATCTGTTCACAAAAGCCCACAAGCTCAA
GCACAGGTCGGTGGCGCGTTCTGATGGGAACGACCGAGGAGCAGGATACT
GACCTTGGCCATGCCGTCGACTTCACCTGCTACTGACACGGTCTTCAGCC
TCATCGTCGTTGCCTGAGCCTATTCCTACACGCCCTTGGATGCCACTCTT
CATGTCATGGCACATTTGCCATCCTTGCAATTGAAGGAACGCTTGATGAC
TGCTAGTGAAGCCATAATTGGCTTGGCCGCACGGAGATGGGATGTTACCC
AAGGTGGATTCTGCGCTGACGGCAGATAATTTCGACGCGTCATTTTTTAT
GTTTGTGTCGTCCCAATCACATGACTGCATTTGCCTGGGAAGACCATTGC
ACCTTCAATCTTTGAGTAGATGCCATTGCATTGCACAAGTGCCCGGCCGC
ACCCGCACTGCAGGCGGCGACCTCCGTCTCTTGCTCACCCTCCTTTCCAT
ACATCCACATCGACAATATTTACCATACAGAGCATGCGGGCTTTCCCCCC
CACTTTTACCATAACGACGCTCAGCCTCGTTCAGATCGCCGTGTTGTCTA
CTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTGCCGCTTCCAAAGCTTTC
CTCTTCACGCAAGCCGCCCAATCGGCCAACGCCGCTATCTCCCGTAAGCG
CACTGCCGGTGCGCCTCGAATGCTCTTTACCCGCATGTTTGGTGGGACAC
CAGCGCCGGACCCGGCCACTAATCTGGCTACTAAGCCTGCCTTGACCAAG
ATTAAAACCGAGGACGAATGGAAGCAAATTCTCTCGCCCACGGCCTTCAA
GGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAAGGTGAACATGGCAAAGG
GTGGATGGGACGATCACACAGCCAAGGGAACGTACGTCTGCACGGGATGC
AAGACTCCTTTGTACACCTCGGCGATGAAGTTTGACTGTGGGTGTGGATG
GCCCGGGTTTTGGACCAACATCAAGGATGCCGTATATGAGCAGCGTGATT
CGGATGGCTTCCGTTGCGAGATTCTGTGCTCGGAGTGCGATGGACACTTG
GGCCATGTTTTCCGAAATGAGGGATTCGGGAACCCGCCTCCTGATGAGCG
GCACTGTGTGAATTCGGTGTCGGTGGGCTTTATTCCGGAGGGAAAGGATG
TAATCCAGCCTTGCACCTATGAGGGGCCTGTTTACGAGTAGGTGGGGGGG
TAAGCTTCTGGTAGCGAATGAATGATAAGATTGGAAGCAGATGGAAAGGA
AGAGGCCGGGTGGACGGCGAGAAGCAAGAGATATCGGCAGCTGAGGCTGG
GAATCCCGAGGCTTGCTCTTCTTTTCCTCTTGCTCTTTTCGGGGCACAAA
ACACGCAATCTATGCAAGCGGTAGAAAAGACATTATG back to topCoding sequence (CDS) from alignment at chr7:682048..683634+ >NO07G02300.1 ID=NO07G02300.1|Name=NO07G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr7:682048..683634+ (Nannochloropsis oceanica) ATGCCATTGCATTGCACAAGTGCCCGGCCGCACCCGCACTGCAGGCGGCG ACCTCCGTCTCTTGCTCACCCTCCTTTCCATACATCCACATCGACAATAT TTACCATACAGAGCATGCGGGCTTTCCCCCCCACTTTTACCATAACGACG CTCAGCCTCGTTCAGATCGCCGTGTTGTCTACTCGCGGAGCCAGCGGATT TGTTGTGCCAGCTGCCGCTTCCAAAGCTTTCCTCTTCACGCAAGCCGCCC AATCGGCCAACGCCGCTATCTCCCGTAAGCGCACTGCCGGTGCGCCTCGA ATGCTCTTTACCCGCATGTTTGGTGGGACACCAGCGCCGGACCCGGCCAC TAATCTGGCTACTAAGCCTGCCTTGACCAAGATTAAAACCGAGGACGAAT GGAAGCAAATTCTCTCGCCCACGGCCTTCAAGGTGCTCCGTCGCAAGGCT ACCGAGCCTCGTAAGGTGAACATGGCAAAGGGTGGATGGGACGATCACAC AGCCAAGGGAACGTACGTCTGCACGGGATGCAAGACTCCTTTGTACACCT CGGCGATGAAGTTTGACTGTGGGTGTGGATGGCCCGGGTTTTGGACCAAC ATCAAGGATGCCGTATATGAGCAGCGTGATTCGGATGGCTTCCGTTGCGA GATTCTGTGCTCGGAGTGCGATGGACACTTGGGCCATGTTTTCCGAAATG AGGGATTCGGGAACCCGCCTCCTGATGAGCGGCACTGTGTGAATTCGGTG TCGGTGGGCTTTATTCCGGAGGGAAAGGATGTAATCCAGCCTTGCACCTA TGAGGGGCCTGTTTACGAGTAG back to top
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