NO07G02220, NO07G02220 (gene) Nannochloropsis oceanica

Overview
NameNO07G02220
Unique NameNO07G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1937
Alignment locationchr7:664613..666549 +

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Properties
Property NameValue
DescriptionRibosomal protein s16
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:664613..666549 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR000754Ribosomal_S9
Homology
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ETL91183.1 (40S ribosomal protein S16 [Phytophthora parasitica] >ETP42550.1 40S ribosomal protein S16 [Phytophthora parasitica P10297])

HSP 1 Score: 218.8 bits (556), Expect = 1.300e-53
Identity = 113/155 (72.90%), Postives = 123/155 (79.35%), Query Frame = 0 
Query:   19 PPSLFTVMADE----LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            PP L    A E    + SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:    9 PPLLIFAQASEMEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGSSARARFQKSYR 163
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: AAY66897.1 (ribosomal protein S16 [Ixodes scapularis])

HSP 1 Score: 218.0 bits (554), Expect = 2.200e-53
Identity = 104/142 (73.24%), Postives = 121/142 (85.21%), Query Frame = 0 
Query:   28 DELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            + ++SVQV GRKKTATAVA+ K G GL+ VNG P+EN+EP  LRYK+LEP+LLL +  FA VDIR+RVKGGG+ AQIYAIRQAISK +VA+YQKYVDE  K E+K+TL+ YDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    7 EAIQSVQVLGRKKTATAVAYCKRGNGLLKVNGRPLENIEPLTLRYKLLEPILLLGKERFAGVDIRIRVKGGGNVAQIYAIRQAISKALVAYYQKYVDEQSKKEIKDTLIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ABI52717.1 (ribosomal protein S16 [Argas monolakensis])

HSP 1 Score: 218.0 bits (554), Expect = 2.200e-53
Identity = 103/142 (72.54%), Postives = 121/142 (85.21%), Query Frame = 0 
Query:   28 DELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            D L +VQVFGRKKTATAVA+ K GRGL+ VNG P+EN+EP  LRYK+LEP+LLL +  FA VDIR+RVKGGG+ AQ+YA+RQA+SK +VA+YQKYVDE  K E+K+ L+ YDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:   11 DRLPTVQVFGRKKTATAVAYCKRGRGLLKVNGRPLENIEPLTLRYKLLEPILLLGKERFAGVDIRIRVKGGGNVAQMYAVRQALSKALVAYYQKYVDEQSKKEIKDILIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 152
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: ELU16265.1 (hypothetical protein CAPTEDRAFT_153161 [Capitella teleta])

HSP 1 Score: 218.0 bits (554), Expect = 2.200e-53
Identity = 105/140 (75.00%), Postives = 121/140 (86.43%), Query Frame = 0 
Query:   30 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            L+SVQVFGRKKTATAVA  K G+GLI VNG P+  +EP++LRYK+ EP+LLL +  FA VDIRVRVKGGG  +Q+YAIRQAISK +VA+YQKYVDEA K E+K+TL+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    8 LQSVQVFGRKKTATAVAHCKSGQGLIKVNGRPLNQLEPQMLRYKVQEPLLLLGKERFAGVDIRVRVKGGGRVSQVYAIRQAISKALVAYYQKYVDEASKKEIKDTLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 147
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_008875223.1 (40S ribosomal protein S16 [Aphanomyces invadans] >XP_009830842.1 40S ribosomal protein S16 [Aphanomyces astaci] >ETV79906.1 40S ribosomal protein S16 [Aphanomyces astaci] >ETV95912.1 40S ribosomal protein S16 [Aphanomyces invadans])

HSP 1 Score: 218.0 bits (554), Expect = 2.200e-53
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0 
Query:   29 ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +++SVQ FGRKK ATAVA+ K+GRGLI VNG PIE VEPE+LR K  EP+LLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K +VA++QKYVDEA KNE+K  LL+YDRTLLVADPR CE KKFGGPSARAR+QKSYR
Sbjct:    6 KIQSVQTFGRKKNATAVAYCKNGRGLIKVNGCPIELVEPEVLRTKTYEPILLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKSLVAYHQKYVDEASKNEIKNILLSYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_009531521.1 (hypothetical protein PHYSODRAFT_355047 [Phytophthora sojae] >EGZ14092.1 hypothetical protein PHYSODRAFT_355047 [Phytophthora sojae])

HSP 1 Score: 217.6 bits (553), Expect = 2.900e-53
Identity = 109/144 (75.69%), Postives = 120/144 (83.33%), Query Frame = 0 
Query:   26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            M  ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:    1 MEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGASARARFQKSYR 144
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_008608456.1 (40S ribosomal protein S16 [Saprolegnia diclina VS20] >XP_012207446.1 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >XP_012207464.1 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >EQC38129.1 40S ribosomal protein S16 [Saprolegnia diclina VS20] >KDO21785.1 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >KDO21891.1 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >OQR91330.1 40S ribosomal protein S16 [Achlya hypogyna])

HSP 1 Score: 217.6 bits (553), Expect = 2.900e-53
Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 0 
Query:   27 ADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            A ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIRVRVKGGGHT+QIYAIRQAI+K IVA+YQKYVDEA K E+K+ LL YDRTLLVADPR CE KKFGGPSARAR+QKSYR
Sbjct:    4 ASKIESVQVFGRKKNATAVAYCKRGHGLIKVNGCPIELVEPEILRTKTYEPVLLLGQQRFANVDIRVRVKGGGHTSQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLDYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_008893682.1 (40S ribosomal protein S16 [Phytophthora parasitica INRA-310] >ETI44660.1 40S ribosomal protein S16 [Phytophthora parasitica P1569] >ETK84645.1 40S ribosomal protein S16 [Phytophthora parasitica] >ETL38081.1 40S ribosomal protein S16 [Phytophthora parasitica] >ETM44510.1 40S ribosomal protein S16 [Phytophthora parasitica] >ETN21978.1 40S ribosomal protein S16 [Phytophthora parasitica INRA-310] >ETO73309.1 40S ribosomal protein S16 [Phytophthora parasitica P1976] >ETP14469.1 40S ribosomal protein S16 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 217.6 bits (553), Expect = 2.900e-53
Identity = 109/144 (75.69%), Postives = 120/144 (83.33%), Query Frame = 0 
Query:   26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            M  ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:   20 MEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGSSARARFQKSYR 163
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: XP_002899087.1 (40S ribosomal protein S16 [Phytophthora infestans T30-4] >EEY62451.1 40S ribosomal protein S16 [Phytophthora infestans T30-4])

HSP 1 Score: 217.6 bits (553), Expect = 2.900e-53
Identity = 110/149 (73.83%), Postives = 123/149 (82.55%), Query Frame = 0 
Query:   21 SLFTVMADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            +L + M  ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:   10 ALASEMEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGGSARARFQKSYR 158
[Close]
BLAST of NO07G02220 vs. NCBI_GenBank
Match: KUF88277.1 (hypothetical protein AM588_10002001 [Phytophthora nicotianae] >KUG01636.1 40S ribosomal protein S16 [Phytophthora nicotianae])

HSP 1 Score: 217.6 bits (553), Expect = 2.900e-53
Identity = 109/144 (75.69%), Postives = 120/144 (83.33%), Query Frame = 0 
Query:   26 MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 170
            M  ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL +  FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:    1 MEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGSSARARFQKSYR 144
The following BLAST results are available for this feature:
BLAST of NO07G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETL91183.11.300e-5372.9040S ribosomal protein S16 [Phytophthora parasitica... [more]
AAY66897.12.200e-5373.24ribosomal protein S16 [Ixodes scapularis][more]
ABI52717.12.200e-5372.54ribosomal protein S16 [Argas monolakensis][more]
ELU16265.12.200e-5375.00hypothetical protein CAPTEDRAFT_153161 [Capitella ... [more]
XP_008875223.12.200e-5375.1840S ribosomal protein S16 [Aphanomyces invadans] >... [more]
XP_009531521.12.900e-5375.69hypothetical protein PHYSODRAFT_355047 [Phytophtho... [more]
XP_008608456.12.900e-5376.2240S ribosomal protein S16 [Saprolegnia diclina VS2... [more]
XP_008893682.12.900e-5375.6940S ribosomal protein S16 [Phytophthora parasitica... [more]
XP_002899087.12.900e-5373.8340S ribosomal protein S16 [Phytophthora infestans ... [more]
KUF88277.12.900e-5375.69hypothetical protein AM588_10002001 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000646NSK000646Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02220.1NO07G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580736gene_2548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g88gene3399Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02220.1NO07G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02220 ID=NO07G02220|Name=NO07G02220|organism=Nannochloropsis oceanica|type=gene|length=1937bp
GGGGGGGGGGGGGCAGCGCGTGAGGATCAGAGGCGACCACGGAACAAGCG
TGCGATGAATGTACCCGCCCTGAAATGACGGCTGTCCTTGGCGCGAGCGT
AGCTCTACACCCGCCATCCATGGCAACATACAGTTGGGGCATGTAGGGCT
TTGCGTGTTGTTTTGTGCGATACAGTGTTGCATCGCGTAAGGCGTGGTAA
AGAATAAGGCATAAATAACAGTCGTACACAGCCTTTAACCCTCGGCACGC
CGCCCGGTTGTTTCCGCGAGTGGATTTTGTGTGGAGGCGCGTAAGAGGTG
GATGGAGGAGGAAGAGGTGAGCATGGCAGGGAATAGAAATGGCAAGGCTT
TGTGCCGCTCTTCTAGAGTGTGTTTCAAGCTCTTGGATTAGTGTGTAGGG
TTTTTGAAAGGCCGATAGCGTTTCATGCAAGATGGCAAGATGGACGGTGG
GCAGCCGCCCGACGAAGAAGGGAGTGGAGGGCAGGCATTCGTCATGCCGT
GCCTTCCTGTTTCCTTCCTCATATAGCGGATGCCCTCAAATCATAATTCT
GCACGGGCATCACAGAATTTATACGAGTATGCTGCGAGAGCCTGTTGGTG
GAATTGAACAGGATGTATACATTTGCATTATCGCTCGTCATAACCACTTC
TCTTTCTTCCACCCACCCTCCATCCCTTTTTACAGTCATGGCAGACGAGT
TGCGCTCGGTACAGGTCTTTGGCCGCAAGgtacgtgtgttagtcaaattg
tacccaaaccataaatgcccggggagtgtatgggtgatagggaggacacg
gcctggaaagaagagggaaagacgagagcgcggcgtgtggggccagatgc
ggcgcggccacttccaagctgcttgtgcaagtcttgctggcgattgtgtc
atggctaagcactactcatctcttacgttaagggactgattgcctcgtgt
cgcggagggcatgtcatggccatggacggttggaggaatggcgtacaaga
cggcggattttattgtcaactattagcgtctttctgtcctaattggagtt
gcctcgcctcgcgcgtctagtcgggctcaaaagagtcgcagtagatgata
atgtctggattgcgggcacggggcttctctctgtgtcatggcggtggcga
agtaatgaataaataattttctccgtttcgttcctgttctgctgatgcat
ccgtaccccaaacccccttctccctgccctttcccattctgacagAAAAC
GGCGACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACGTTA
ATGGGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAGATC
TTGGAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGACAT
TCGTGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTATCC
GACAAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTAGAC
GAGGCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCGCAC
CTTGCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCC
CATCTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGGGTGGCTGGAAG
ATGGAGGAGAGGGGCACGGGAGGGAGAACAGGCTGCAGTCACGGAAGGTG
GCTGGTGCCTGCAGGGCCTTCGACATCATTGGCGCGGGGCGGGCGGTTTC
CTTTTTCTTACATGGGACAGGGTGGTGAAGGTCGGAGGCTCTAGTGGTAT
TGCAGTAGATAGCACCAGTGTTTGTCATTGTAAGACCCGCAGACTGAAGT
GGACCTCGTTGCGGTAGTGACTCACGCACGGAAATAGAAGAAAACAAGAA
GCTTAAAGCTCCTTCGGAAAAATCGAAAAACGAGAGT
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protein sequence of NO07G02220.1

>NO07G02220.1-protein ID=NO07G02220.1-protein|Name=NO07G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MYTFALSLVITTSLSSTHPPSLFTVMADELRSVQVFGRKKTATAVAFVKD
GRGLINVNGAPIENVEPELLRYKILEPVLLLNEATFAKVDIRVRVKGGGH
TAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHC
EPKKFGGPSARARYQKSYR*
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Synonyms
Publications