NO07G02190, NO07G02190 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G02190
Unique Name	NO07G02190
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1785
Alignment location	chr7:659073..660857 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:659073..660857 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO07G02190 vs. NCBI_GenBank

BLAST of NO07G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR071	ncniR071	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO07G02190.1	NO07G02190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580730	gene_2545	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO07G02190.1	NO07G02190.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO07G02190 ID=NO07G02190|Name=NO07G02190|organism=Nannochloropsis oceanica|type=gene|length=1785bp
CAGTCATCACTCACACAAGGGGTTAAATATGCCAAAGCAGGTCAGCGTCA
TGGCATTTTCCCGCTGCTGCGGCGGTGAAAGAGGCGGCCAGGGGAGGGGT
GGAGGATGCCACGCTGGCAGTGGGGGTCAAGATGCTGGTGCTGGCGCTGG
ACTTGGCACTGGACGAGGCGGTGCGGCAGAAAGAGGCATCAAACGgtacg
tttttagcaggaaaacataaatgaaatattgttttatttacttctctcca
tatccgcccagGACAGGCGTTCGCACATGGAGGACGAGAGGACGTACGAC
CAGCAGCAGTCGTCCCCAACCAAAAGGTCAAGGGTGACCGCGGGAGACAG
CGGCCGCCTCAACTCCCATGAAACCTCATGGATATCCGTTATTTCCTATA
GTGTCACTCATAGTACCACTCGTAGCAGCAATGGAAAAGTTATTGCTCCT
CGCCCTCAAGCACTACCACCACCTCTCCCTCTCGCTCCTCTAGCGTCCTC
CTCCTGCTCATCCGCACCCTCCCCTGCATCCTCCTCCTCCGCATCTTCTT
CATCGTCATCATCATCTTCTTCTTCTTCTTCTCCTCCTTCTTCTTCTGCT
GCTACTGAAGACTGGCAGCACAAGGCCCTGTGGCTCGAGCATCGTGCGCA
TGCCGAAGGTGTTCAAACCGTTAATTCAAGGGAGGTAGAAGAGGAGGACC
ATGGCGTGAAGAACATGGCGGTGGGAGAGGAAGGGTTGAGTAGTGAAGGA
GGACGAGAGAGCAGTAGCTGGGCGCCCTTGCCTCCGCGACGACACTGGGA
CCGAAGGCGGGGACAGCAGCAGGGACGGTCACGGGCGGCTTCGATCGAGA
TGGTGACGTCGTAGTCAGAACCTGCGTTTCACAAGGCACGGGCAGAAAGA
TTTGAGGAGCAAGCATAAAGCACTGCCCTTTGTGGACGGAAAGCGAGAAG
CCTCTTTTTGTACCATGGTGGACGCTGAAGAGTAGCAGCGCTACAAGGCT
GAGCACAATAAAGTTAGCTTTCCCCCGATATTGGGCGATGAGACCGTCAC
TATACGGTGATAACGGGGTGCTGGAATACCTTCAATGCCGCCTGGGTGGT
GGGAACGGGTCAGGTACGGCACTTTCTTCGCAAGACCGCTTCAGGGCCTG
CTGTCGGTTGTAGAGAACGGGATGGGCAAGGAGGCAGAAGCTGTGGAGAT
GCATATGGTGCAGGAGCAGCGTGGGAATAGGAGGAGTTCGGGGAGGATTA
TGAGCTGCATAGCAGCTAAATTACTTCCAAATCGCCAACCTCCTTCCTCT
TACCGTGCACTCGGCACTGCGTGCCCACGTCCTGCTCGGAGCAGCACGCT
ATGGCTGCAGCCGTGCAGCAGGGTGCTCTCGAAGTTTTTCCCTTGATGCT
CGGTGCAGGCGCAGAGCTGGCAGCTCTCAATGCTGCCGGCGCAGAAGGAT
GATAACGTCCATCACGAGCAGCAGCGGCAGCGTGTCAACGGGGTGCGGAT
AATTACGGGACAAAATGTCAGGGCTGAGTTAATCCGCTACACCTGATGCA
CATCAAGAGGCTCGTCCCTCCAGATCACTTTGGTGGCTGCAAAGTGAATA
ACGACGGCTTTAAGATCCTGAAGCTTTAAGGGGAAGAGGAGAGGGTATAT
GAAGTACTTGAGTGGTACCAGTGCCGTGACGCGGGTCGCAATTATTGTAA
GCGAGCGAAAGAAAAGGCCAGGGGCTCTTAGAGTGAAAACGAAAGGAGCA
AGAATAGATGCATGTCCCACTCCTTACACCTTTGC

protein sequence of NO07G02190.1

>NO07G02190.1-protein ID=NO07G02190.1-protein|Name=NO07G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MPRWQWGSRCWCWRWTWHWTRRCGRKRHQTDRRSHMEDERTYDQQQSSPT
KRSRVTAGDSGRLNSHETSWISVISYSVTHSTTRSSNGKVIAPRPQALPP
PLPLAPLASSSCSSAPSPASSSSASSSSSSSSSSSSSPPSSSAATEDWQH
KALWLEHRAHAEGVQTVNSREVEEEDHGVKNMAVGEEGLSSEGGRESSSW
APLPPRRHWDRRRGQQQGRSRAASIEMVTS*

Synonyms

Publications