NO07G01680, NO07G01680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G01680 vs. NCBI_GenBank
Match: SAL95951.1 (hypothetical protein [Absidia glauca]) HSP 1 Score: 67.8 bits (164), Expect = 4.500e-8 Identity = 51/168 (30.36%), Postives = 73/168 (43.45%), Query Frame = 0 Query: 34 CAIDSPLWQRVRVVTLEENVRIRAAHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDHVYGDFNNARNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202 C I S +WQ V+V+TL EN+R+R + D A +LLAVG G PP + D L++ +Y + A + + R IL KN+ VD N++A +FPG EMVY S D D+ DA M+Y + F+ Sbjct: 273 CIISSYIWQGVKVLTLVENMRVRGTNQEAVDF--------AKMLLAVGNG--DPP------------------YQEHVQIPRHWLLDSEDVSTLINKIYPSLSLASDPS--FFATRAILTTKNQFVDRINNHATQAFPGAEMVYRSNDCVIDGDDPDADSMNYPVEFL 410
BLAST of NO07G01680 vs. NCBI_GenBank
Match: EOA15054.1 (hypothetical protein CARUB_v10028413mg, partial [Capsella rubella]) HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7 Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 0 Query: 32 VVCAIDSP-LWQRVRVVTLEENVRIRA---AHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDH-VYGDFNNA-RNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202 V+ A++S LW+ ++V+TL +N+R+ + + A +D++ FS D +LAVGEG+ P + DPI + VYGD + K R IL P N DV+ N+ + GEEMVYLSAD D+E +T F+ Sbjct: 233 VLAALNSSYLWEHIKVLTLTKNMRLMSEDLSESAARDIKAFS-----DWILAVGEGKVAEPN---------------DGEALIDIPEEFLIENSNDPIEAISRAVYGDLEMLHKRAEPKFFQSRAILCPTNNDVNTINERLLEKLQGEEMVYLSADSIDPQDSESLNNPVFTQDFL 388
BLAST of NO07G01680 vs. NCBI_GenBank
Match: XP_010484960.1 (PREDICTED: ATP-dependent DNA helicase PIF1-like [Camelina sativa]) HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7 Identity = 52/182 (28.57%), Postives = 78/182 (42.86%), Query Frame = 0 Query: 24 PRVAGINTVVCAIDSP-LWQRVRVVTLEENVRIRAAHDA--GQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIR-LLDHVYGDFNNARNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202 P + TV+ +I+S LW +V+ L +N+R+R A ++ DL FS LL +G+G+ P +PI+ ++ +YG + A T K +R IL P+N DV+ N Y + PGEE YLS+D D D M YT F+ Sbjct: 404 PEAGRVGTVLASINSSLLWNSCKVLQLTQNMRLRKAQNSIDANDLTTFSK-----WLLDIGDGKINKPYNGEVEIDIPKDLLITEFD---------------NPIQAIVKEIYGT-SFATRTDAKFFCERDILGPRNDDVNKINQYMLSQIPGEERQYLSSDSVETSDTSDYDDMTYTQEFL 564
BLAST of NO07G01680 vs. NCBI_GenBank
Match: XP_006282156.2 (ATP-dependent DNA helicase PIF1 [Capsella rubella]) HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7 Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 0 Query: 32 VVCAIDSP-LWQRVRVVTLEENVRIRA---AHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDH-VYGDFNNA-RNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202 V+ A++S LW+ ++V+TL +N+R+ + + A +D++ FS D +LAVGEG+ P + DPI + VYGD + K R IL P N DV+ N+ + GEEMVYLSAD D+E +T F+ Sbjct: 201 VLAALNSSYLWEHIKVLTLTKNMRLMSEDLSESAARDIKAFS-----DWILAVGEGKVAEPN---------------DGEALIDIPEEFLIENSNDPIEAISRAVYGDLEMLHKRAEPKFFQSRAILCPTNNDVNTINERLLEKLQGEEMVYLSADSIDPQDSESLNNPVFTQDFL 356 The following BLAST results are available for this feature:
BLAST of NO07G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G01680 ID=NO07G01680|Name=NO07G01680|organism=Nannochloropsis oceanica|type=gene|length=773bpback to top protein sequence of NO07G01680.1 >NO07G01680.1-protein ID=NO07G01680.1-protein|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bpback to top Synonyms
Publications
|