NO07G01680, NO07G01680 (gene) Nannochloropsis oceanica

Overview
NameNO07G01680
Unique NameNO07G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length773
Alignment locationchr7:507274..508046 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:507274..508046 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO07G01680 vs. NCBI_GenBank
Match: SAL95951.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 67.8 bits (164), Expect = 4.500e-8
Identity = 51/168 (30.36%), Postives = 73/168 (43.45%), Query Frame = 0
Query:   34 CAIDSPLWQRVRVVTLEENVRIRAAHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDHVYGDFNNARNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202
            C I S +WQ V+V+TL EN+R+R  +    D         A +LLAVG G   PP                                + D   L++ +Y   + A + +      R IL  KN+ VD  N++A  +FPG EMVY S D     D+ DA  M+Y + F+
Sbjct:  273 CIISSYIWQGVKVLTLVENMRVRGTNQEAVDF--------AKMLLAVGNG--DPP------------------YQEHVQIPRHWLLDSEDVSTLINKIYPSLSLASDPS--FFATRAILTTKNQFVDRINNHATQAFPGAEMVYRSNDCVIDGDDPDADSMNYPVEFL 410          
BLAST of NO07G01680 vs. NCBI_GenBank
Match: EOA15054.1 (hypothetical protein CARUB_v10028413mg, partial [Capsella rubella])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 0
Query:   32 VVCAIDSP-LWQRVRVVTLEENVRIRA---AHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDH-VYGDFNNA-RNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202
            V+ A++S  LW+ ++V+TL +N+R+ +   +  A +D++ FS     D +LAVGEG+   P                                + DPI  +   VYGD     +    K    R IL P N DV+  N+  +    GEEMVYLSAD     D+E      +T  F+
Sbjct:  233 VLAALNSSYLWEHIKVLTLTKNMRLMSEDLSESAARDIKAFS-----DWILAVGEGKVAEPN---------------DGEALIDIPEEFLIENSNDPIEAISRAVYGDLEMLHKRAEPKFFQSRAILCPTNNDVNTINERLLEKLQGEEMVYLSADSIDPQDSESLNNPVFTQDFL 388          
BLAST of NO07G01680 vs. NCBI_GenBank
Match: XP_010484960.1 (PREDICTED: ATP-dependent DNA helicase PIF1-like [Camelina sativa])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 52/182 (28.57%), Postives = 78/182 (42.86%), Query Frame = 0
Query:   24 PRVAGINTVVCAIDSP-LWQRVRVVTLEENVRIRAAHDA--GQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIR-LLDHVYGDFNNARNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202
            P    + TV+ +I+S  LW   +V+ L +N+R+R A ++    DL  FS       LL +G+G+   P                                  +PI+ ++  +YG  + A  T  K   +R IL P+N DV+  N Y +   PGEE  YLS+D     D  D   M YT  F+
Sbjct:  404 PEAGRVGTVLASINSSLLWNSCKVLQLTQNMRLRKAQNSIDANDLTTFSK-----WLLDIGDGKINKPYNGEVEIDIPKDLLITEFD---------------NPIQAIVKEIYGT-SFATRTDAKFFCERDILGPRNDDVNKINQYMLSQIPGEERQYLSSDSVETSDTSDYDDMTYTQEFL 564          
BLAST of NO07G01680 vs. NCBI_GenBank
Match: XP_006282156.2 (ATP-dependent DNA helicase PIF1 [Capsella rubella])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 52/176 (29.55%), Postives = 78/176 (44.32%), Query Frame = 0
Query:   32 VVCAIDSP-LWQRVRVVTLEENVRIRA---AHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYDPIRLLDH-VYGDFNNA-RNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202
            V+ A++S  LW+ ++V+TL +N+R+ +   +  A +D++ FS     D +LAVGEG+   P                                + DPI  +   VYGD     +    K    R IL P N DV+  N+  +    GEEMVYLSAD     D+E      +T  F+
Sbjct:  201 VLAALNSSYLWEHIKVLTLTKNMRLMSEDLSESAARDIKAFS-----DWILAVGEGKVAEPN---------------DGEALIDIPEEFLIENSNDPIEAISRAVYGDLEMLHKRAEPKFFQSRAILCPTNNDVNTINERLLEKLQGEEMVYLSADSIDPQDSESLNNPVFTQDFL 356          
The following BLAST results are available for this feature:
BLAST of NO07G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
SAL95951.14.500e-830.36hypothetical protein [Absidia glauca][more]
EOA15054.11.000e-729.55hypothetical protein CARUB_v10028413mg, partial [C... [more]
XP_010484960.11.000e-728.57PREDICTED: ATP-dependent DNA helicase PIF1-like [C... [more]
XP_006282156.21.000e-729.55ATP-dependent DNA helicase PIF1 [Capsella rubella][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01680.1NO07G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01680.1NO07G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01680 ID=NO07G01680|Name=NO07G01680|organism=Nannochloropsis oceanica|type=gene|length=773bp
ATGTTGACGATGAAGAGGCAGCTCAGACACACGGAACGGCAGCCGCAAGA
CGCAGAGAAGAACCAGCCACCACGCGTTGCAGGCATAAACACCGTTGTCT
GTGCGATAGATTCgtgggttgggttgggtcaatgagtgatggaaaacgcg
actgcgtcagttgaagtgttgaagtgaacactaccgaataacccccgggg
gatcgacgtaaaatcctcctagtggtccgagacgacgaccaaagtgctac
cgtgcgcgcttccccaatttgtagCCCTCTCTGGCAACGTGTCCGCGTCG
TTACCCTGGAGGAAAACGTGCGTATCCGTGCGGCGCACGACGCGGGCCAG
GATCTTAGGATCTTCTCCAATGGTATGCGGGCGGACCTCCTCCTCGCGGT
AGGGGAAGGACGGGCAACCCCACCCACTCCGACAGTAGGCACCCTCCATT
CCACCCCGCCTTTCCCTCCACCCCAGCTGGAGTTCGTCCTGCCCCCCTTC
ATGCACCCTCCGTCAGAGTTGAACTACGACCCCATTAGGCTCCTCGACCA
CGTCTACGGGGACTTCAATAACGCGCGCAATACAACGAAGAAAACTCTCA
TTGATCGCACCATCCTCAACCCCAAGAATAAGGACGTCGACGCCTCGAAT
GACTACGCCGTCCATTCTTTCCCCGGAGAAGAGATGGTATACCTCTCAGC
AGACAGGCCGGCGCAGGACGATAACGAGGATGCGCGGCCTATGGATTATA
CCATTTTTTTTATCTTAATGTGA
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protein sequence of NO07G01680.1

>NO07G01680.1-protein ID=NO07G01680.1-protein|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MLTMKRQLRHTERQPQDAEKNQPPRVAGINTVVCAIDSPLWQRVRVVTLE
ENVRIRAAHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPTVGTLHSTPP
FPPPQLEFVLPPFMHPPSELNYDPIRLLDHVYGDFNNARNTTKKTLIDRT
ILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFF
ILM*
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Synonyms
Publications