NO06G04740, NO06G04740 (gene) Nannochloropsis oceanica

Overview
NameNO06G04740
Unique NameNO06G04740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr6:1354077..1354382 -

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Properties
Property NameValue
DescriptionAT hook motif-containing protein, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1354077..1354382 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO06G04740 vs. NCBI_GenBank
Match: AAV44035.1 (putative helicase [Oryza sativa Japonica Group])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   20 SQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            +  E +  YPT  LNS N P    H L+LKVG+P++LLRN +   GL NGTR+ I  L  R IEA+I+TG HVG+
Sbjct: 1463 NDSETDVLYPTEFLNSLNFPGMPNHVLKLKVGLPVMLLRNINQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGE 1537          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: AAK54302.1 (putative helicase [Oryza sativa Japonica Group] >AAP54108.1 AT hook motif-containing protein, putative [Oryza sativa Japonica Group])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 0
Query:   23 ENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQL 96
            E E  YPT  LNS   P    HQL+LKVG+P++LLRN +   GL NGTR+ I     RVIEA+I+TG H+G +
Sbjct: 1404 EMEMLYPTEFLNSLKHPGIPNHQLKLKVGLPVMLLRNINQNAGLCNGTRMRITRFGKRVIEAEIITGTHIGDM 1476          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: EEE51084.1 (hypothetical protein OsJ_31783 [Oryza sativa Japonica Group])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 0
Query:   23 ENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQL 96
            E E  YPT  LNS   P    HQL+LKVG+P++LLRN +   GL NGTR+ I     RVIEA+I+TG H+G +
Sbjct:  122 EMEMLYPTEFLNSLKHPGIPNHQLKLKVGLPVMLLRNINQNAGLCNGTRMRITRFGKRVIEAEIITGTHIGDM 194          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_020255298.1 (uncharacterized protein LOC109832283 [Asparagus officinalis])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 0
Query:    7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQLQAATR 101
            L+SD I  ++  L    N+  YPT  LNS   PS   H+++LKVG PI+LL N  P +GL NGTRL++  L   VIEA+I++G H+G     +R
Sbjct:  916 LSSDSICQTSPNLQL--NQSLYPTEFLNSLTFPSMPNHEIKLKVGTPIMLLHNLRPTEGLCNGTRLVVTQLLKWVIEARIISGSHIGSKHFLSR 1007          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021854440.1 (uncharacterized protein LOC110793821 [Spinacia oleracea])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0
Query:   15 SADRL-----SQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQLQAATR 101
            SADR+     +   +E  YPT  LN+   P    H++RLKVG PIIL RN    +GL NGTRL++  L  RVI+AK++TG +VG+  A  R
Sbjct:   79 SADRICPFTNTSTNDEVLYPTEFLNTLQFPGIPNHEIRLKVGCPIILTRNISQSEGLCNGTRLIVSRLDTRVIQAKVVTGTNVGEQVAIPR 169          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021840493.1 (uncharacterized protein LOC110780404 [Spinacia oleracea])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0
Query:   10 DPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            D + P A+R S DE+   YPT  LN+        H++RLKVG PIILLRN + V+GL NGTRL+I  L   VIEA+++TG +VG+
Sbjct:  333 DRVSPLANRTSVDED--LYPTEFLNTLQFLGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEQIVIEAQVVTGTNVGR 415          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021722586.1 (uncharacterized protein LOC110690069 [Chenopodium quinoa])

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-11
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 0
Query:   22 DENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            D+   AYPT  LNS   P    H+L+LK G+P++LLRN +P QGL NGTRL+I HL   VIE KI+TG   G
Sbjct:  204 DQQFDAYPTEYLNSLKLPGLPHHELKLKEGMPVMLLRNINPPQGLCNGTRLIITHLGKFVIEGKIITGSKQG 275          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: BAD68127.1 (helicase-like protein [Oryza sativa Japonica Group])

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-11
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0
Query:   15 SADRLSQ-----DENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            SAD LSQ     ++ +  YP   LNS N  +F  H L+LKVG+PIILLRN +   GL NGTRL+I +L   +IE  I+TG H+G+
Sbjct: 1241 SADTLSQCMDTTNDADILYPVEYLNSLNANNFPTHVLKLKVGVPIILLRNLNQNLGLCNGTRLIITNLGDNIIEGIIITGTHIGE 1325          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_020243206.1 (uncharacterized protein LOC109821431 [Asparagus officinalis])

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-11
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            +SD I P++  L+   NE  YPT  LNS+  P    H+++LKVG PI+LLRN  P  G+ NGTRL+I  L   +IEA+I++G ++G
Sbjct:  202 SSDSICPTSPNLA--SNEILYPTKFLNSQKFPGMPNHEIKLKVGTPIMLLRNLSPADGICNGTRLVITQLLKWIIEARIISGSNIG 285          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_023899951.1 (ATP-dependent DNA helicase PIF1-like [Quercus suber])

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-11
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    7 LNSDPI-PPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            L++D I   S + L QD     YPT LLNS   P    H+LRLKVG+PI+LLRN +   GL NGTRLL+  LS  V+EA+I++G HVG
Sbjct:   13 LSADSICKASTNILDQDV---MYPTELLNSLKYPDIPNHKLRLKVGLPIMLLRNLNQSAGLCNGTRLLVTQLSKWVLEAQIISGSHVG 97          
The following BLAST results are available for this feature:
BLAST of NO06G04740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
AAV44035.19.700e-1250.67putative helicase [Oryza sativa Japonica Group][more]
AAK54302.19.700e-1252.05putative helicase [Oryza sativa Japonica Group] >A... [more]
EEE51084.19.700e-1252.05hypothetical protein OsJ_31783 [Oryza sativa Japon... [more]
XP_020255298.19.700e-1244.68uncharacterized protein LOC109832283 [Asparagus of... [more]
XP_021854440.19.700e-1246.15uncharacterized protein LOC110793821 [Spinacia ole... [more]
XP_021840493.19.700e-1250.59uncharacterized protein LOC110780404 [Spinacia ole... [more]
XP_021722586.11.300e-1154.17uncharacterized protein LOC110690069 [Chenopodium ... [more]
BAD68127.11.300e-1149.41helicase-like protein [Oryza sativa Japonica Group... [more]
XP_020243206.11.700e-1146.51uncharacterized protein LOC109821431 [Asparagus of... [more]
XP_023899951.11.700e-1152.27ATP-dependent DNA helicase PIF1-like [Quercus sube... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04740.1NO06G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04740.1NO06G04740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04740 ID=NO06G04740|Name=NO06G04740|organism=Nannochloropsis oceanica|type=gene|length=306bp
ATGCACCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA
CAGGCTATCGCAGGACGAGAACGAGGGTGCTTACCCCACGGCGCTCTTAA
ACTCCAAGAACCCGCCCAGCTTCGCCCTGCACCAACTACGGCTGAAAGTG
GGCATACCTATCATCCTGTTGCGGAACGCAGACCCGGTACAAGGCCTCGC
CAATGGGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG
CCAAAATTCTGACGGGGATCCACGTGGGTCAATTACAAGCTGCGACACGT
GGATAG
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protein sequence of NO06G04740.1

>NO06G04740.1-protein ID=NO06G04740.1-protein|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MHPPPELNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKV
GIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQLQAATR
G*
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Synonyms
Publications