NO06G04740.1, NO06G04740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04740.1
Unique NameNO06G04740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr6:1354077..1354382 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1354077..1354382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G04740.1 vs.
Match: XP_024636396.1 (uncharacterized protein LOC112420871 [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            +SD I  + D +S  + E  YP   LNS N   F  H L LK G+PI+LLRN +P  G+ NGTRL+I HL  RVIEAKI+TG +VG
Sbjct: 1242 SSDEIDKTTDNIS--DQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG 1325          
The following BLAST results are available for this feature:
BLAST of NO06G04740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024636396.16.800e-1352.33uncharacterized protein LOC112420871 [Medicago tru... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04740NO06G04740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04740.1NO06G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04740.1.cds1NO06G04740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04740.1 ID=NO06G04740.1|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGCACCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA
CAGGCTATCGCAGGACGAGAACGAGGGTGCTTACCCCACGGCGCTCTTAA
ACTCCAAGAACCCGCCCAGCTTCGCCCTGCACCAACTACGGCTGAAAGTG
GGCATACCTATCATCCTGTTGCGGAACGCAGACCCGGTACAAGGCCTCGC
CAATGGGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG
CCAAAATTCTGACGGGGATCCACGTGGGTCAATTACAAGCTGCGACACGT
GGATAG
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protein sequence of NO06G04740.1

>NO06G04740.1-protein ID=NO06G04740.1-protein|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MHPPPELNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKV
GIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQLQAATR
G*
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mRNA from alignment at chr6:1354077..1354382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04740.1 ID=NO06G04740.1|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=306bp|location=Sequence derived from alignment at chr6:1354077..1354382- (Nannochloropsis oceanica)
ATGCACCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA CAGGCTATCGCAGGACGAGAACGAGGGTGCTTACCCCACGGCGCTCTTAA ACTCCAAGAACCCGCCCAGCTTCGCCCTGCACCAACTACGGCTGAAAGTG GGCATACCTATCATCCTGTTGCGGAACGCAGACCCGGTACAAGGCCTCGC CAATGGGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG CCAAAATTCTGACGGGGATCCACGTGGGTCAATTACAAGCTGCGACACGT GGATAG
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Coding sequence (CDS) from alignment at chr6:1354077..1354382-

>NO06G04740.1 ID=NO06G04740.1|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr6:1354077..1354382- (Nannochloropsis oceanica)
ATGCACCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA
CAGGCTATCGCAGGACGAGAACGAGGGTGCTTACCCCACGGCGCTCTTAA
ACTCCAAGAACCCGCCCAGCTTCGCCCTGCACCAACTACGGCTGAAAGTG
GGCATACCTATCATCCTGTTGCGGAACGCAGACCCGGTACAAGGCCTCGC
CAATGGGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG
CCAAAATTCTGACGGGGATCCACGTGGGTCAATTACAAGCTGCGACACGT
GGATAG
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Synonyms
Publications