NO06G04740, NO06G04740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_024636396.1 (uncharacterized protein LOC112420871 [Medicago truncatula]) HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0 Query: 8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94 +SD I + D +S + E YP LNS N F H L LK G+PI+LLRN +P G+ NGTRL+I HL RVIEAKI+TG +VG Sbjct: 1242 SSDEIDKTTDNIS--DQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG 1325
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_024640496.1 (uncharacterized protein LOC112422023 [Medicago truncatula]) HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0 Query: 8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94 +SD I + D +S + E YP LNS N F H L LK G+PI+LLRN +P G+ NGTRL+I HL RVIEAKI+TG +VG Sbjct: 1235 SSDEIDKTTDNIS--DQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG 1318
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021860944.1 (ATP-dependent DNA helicase PIF1-like, partial [Spinacia oleracea]) HSP 1 Score: 80.9 bits (198), Expect = 2.600e-12 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0 Query: 8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 ++D + P +R S DE+ YPT LN+ P H++RLKVG PIILLRN + V+GL NGTRL+I L VIEA+++TG +VG+ Sbjct: 336 SADRVSPLTNRSSVDED--LYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGR 420
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021836944.1 (ATP-dependent DNA helicase PIF1-like [Spinacia oleracea]) HSP 1 Score: 80.9 bits (198), Expect = 2.600e-12 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0 Query: 8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 ++D + P +R S DE+ YPT LN+ P H++RLKVG PIILLRN + V+GL NGTRL+I L VIEA+++TG +VG+ Sbjct: 474 SADRVSPLTNRSSVDED--LYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGR 558
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021971792.1 (uncharacterized protein LOC110866959 [Helianthus annuus]) HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0 Query: 7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94 L+SD + P A Q++ E YPT LN N H+L LKV PIILLRN + GL NGTRL+I L PRVIEA+++TGI +G Sbjct: 942 LSSDSLTPHA--TDQEDTEILYPTEYLNHMNFNGLPPHRLELKVNAPIILLRNINQTAGLCNGTRLIITQLLPRVIEAQVITGIAIG 1026
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_022026205.1 (uncharacterized protein LOC110926864 [Helianthus annuus]) HSP 1 Score: 79.7 bits (195), Expect = 5.700e-12 Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0 Query: 7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 L++D I PS + DE + YPT LN+ H L+LKVG PIILLRN + +GL NGTRL++ +S RVIEA I+TG HVG+ Sbjct: 476 LSADAICPSTNNF--DEIQAMYPTEFLNTLQFSGIPNHVLKLKVGAPIILLRNLNLKKGLCNGTRLVVSQISRRVIEAVIITGTHVGE 561
BLAST of NO06G04740 vs. NCBI_GenBank
Match: PNY11526.1 (ATP-dependent DNA helicase PIF1 [Trifolium pratense]) HSP 1 Score: 79.7 bits (195), Expect = 5.700e-12 Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0 Query: 8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94 +SD I + D LS E E YP LNS F H L LK G+P++LLRN +P G+ NGTRL+I HL VIEAKI+TG +VG Sbjct: 1320 SSDEIDKTTDNLS--EQELMYPVEFLNSMKINGFPNHCLELKEGLPVMLLRNINPALGMCNGTRLIITHLGDWVIEAKIITGCNVG 1403
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_008663236.1 (uncharacterized protein LOC103641690 [Zea mays]) HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12 Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 0 Query: 15 SADRLSQDENEGA-----YPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 S DR++ N G YP LNS N +F H+L LK G+PIILLRN + +GL NGTRL+I L V+EA+ILTG H G+ Sbjct: 210 SCDRIASQSNTGGTLDLLYPVDFLNSINSNNFPQHKLLLKEGVPIILLRNLNQSEGLCNGTRLIITALGDMVLEAQILTGTHAGK 294
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_018461035.1 (PREDICTED: uncharacterized protein LOC108832040 [Raphanus sativus]) HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12 Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 Query: 7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 L+SD I P AD S+DE+ + LLNS H +RL++G P++L+RN DP +GL NGTRL I+ ++P ++EAK++TG +G+ Sbjct: 1318 LSSDSIDP-ADTKSKDES--IFTPELLNSIKASGLPNHSIRLRIGTPVMLIRNIDPNEGLCNGTRLQIMQMAPHIVEAKVITGTRIGE 1402
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_022019810.1 (uncharacterized protein LOC110919870 [Helianthus annuus]) HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12 Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0 Query: 7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95 L++D I PS + DE + YPT LN+ H L+LKVG PIILLRN + +GL NGTRL++ +S RVIEA I+TG HVG+ Sbjct: 1122 LSADAICPSTNNF--DEIQAMYPTEFLNTLQFSGIPNHVLKLKVGAPIILLRNLNLKKGLCNGTRLVVSQISRRVIEAIIITGTHVGE 1207 The following BLAST results are available for this feature:
BLAST of NO06G04740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G04740 ID=NO06G04740|Name=NO06G04740|organism=Nannochloropsis oceanica|type=gene|length=306bpback to top protein sequence of NO06G04740.1 >NO06G04740.1-protein ID=NO06G04740.1-protein|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bpback to top Synonyms
Publications
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