NO06G04740, NO06G04740 (gene) Nannochloropsis oceanica

Overview
NameNO06G04740
Unique NameNO06G04740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr6:1354077..1354382 -

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Properties
Property NameValue
DescriptionAT hook motif-containing protein, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1354077..1354382 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_024636396.1 (uncharacterized protein LOC112420871 [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            +SD I  + D +S  + E  YP   LNS N   F  H L LK G+PI+LLRN +P  G+ NGTRL+I HL  RVIEAKI+TG +VG
Sbjct: 1242 SSDEIDKTTDNIS--DQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG 1325          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_024640496.1 (uncharacterized protein LOC112422023 [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            +SD I  + D +S  + E  YP   LNS N   F  H L LK G+PI+LLRN +P  G+ NGTRL+I HL  RVIEAKI+TG +VG
Sbjct: 1235 SSDEIDKTTDNIS--DQELMYPVEFLNSLNINGFPRHCLELKEGMPIMLLRNINPALGMCNGTRLIITHLGERVIEAKIITGSNVG 1318          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021860944.1 (ATP-dependent DNA helicase PIF1-like, partial [Spinacia oleracea])

HSP 1 Score: 80.9 bits (198), Expect = 2.600e-12
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            ++D + P  +R S DE+   YPT  LN+   P    H++RLKVG PIILLRN + V+GL NGTRL+I  L   VIEA+++TG +VG+
Sbjct:  336 SADRVSPLTNRSSVDED--LYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGR 420          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021836944.1 (ATP-dependent DNA helicase PIF1-like [Spinacia oleracea])

HSP 1 Score: 80.9 bits (198), Expect = 2.600e-12
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            ++D + P  +R S DE+   YPT  LN+   P    H++RLKVG PIILLRN + V+GL NGTRL+I  L   VIEA+++TG +VG+
Sbjct:  474 SADRVSPLTNRSSVDED--LYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGR 558          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_021971792.1 (uncharacterized protein LOC110866959 [Helianthus annuus])

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            L+SD + P A    Q++ E  YPT  LN  N      H+L LKV  PIILLRN +   GL NGTRL+I  L PRVIEA+++TGI +G
Sbjct:  942 LSSDSLTPHA--TDQEDTEILYPTEYLNHMNFNGLPPHRLELKVNAPIILLRNINQTAGLCNGTRLIITQLLPRVIEAQVITGIAIG 1026          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_022026205.1 (uncharacterized protein LOC110926864 [Helianthus annuus])

HSP 1 Score: 79.7 bits (195), Expect = 5.700e-12
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            L++D I PS +    DE +  YPT  LN+        H L+LKVG PIILLRN +  +GL NGTRL++  +S RVIEA I+TG HVG+
Sbjct:  476 LSADAICPSTNNF--DEIQAMYPTEFLNTLQFSGIPNHVLKLKVGAPIILLRNLNLKKGLCNGTRLVVSQISRRVIEAVIITGTHVGE 561          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: PNY11526.1 (ATP-dependent DNA helicase PIF1 [Trifolium pratense])

HSP 1 Score: 79.7 bits (195), Expect = 5.700e-12
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 0
Query:    8 NSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVG 94
            +SD I  + D LS  E E  YP   LNS     F  H L LK G+P++LLRN +P  G+ NGTRL+I HL   VIEAKI+TG +VG
Sbjct: 1320 SSDEIDKTTDNLS--EQELMYPVEFLNSMKINGFPNHCLELKEGLPVMLLRNINPALGMCNGTRLIITHLGDWVIEAKIITGCNVG 1403          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_008663236.1 (uncharacterized protein LOC103641690 [Zea mays])

HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 0
Query:   15 SADRLSQDENEGA-----YPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            S DR++   N G      YP   LNS N  +F  H+L LK G+PIILLRN +  +GL NGTRL+I  L   V+EA+ILTG H G+
Sbjct:  210 SCDRIASQSNTGGTLDLLYPVDFLNSINSNNFPQHKLLLKEGVPIILLRNLNQSEGLCNGTRLIITALGDMVLEAQILTGTHAGK 294          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_018461035.1 (PREDICTED: uncharacterized protein LOC108832040 [Raphanus sativus])

HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0
Query:    7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            L+SD I P AD  S+DE+   +   LLNS        H +RL++G P++L+RN DP +GL NGTRL I+ ++P ++EAK++TG  +G+
Sbjct: 1318 LSSDSIDP-ADTKSKDES--IFTPELLNSIKASGLPNHSIRLRIGTPVMLIRNIDPNEGLCNGTRLQIMQMAPHIVEAKVITGTRIGE 1402          
BLAST of NO06G04740 vs. NCBI_GenBank
Match: XP_022019810.1 (uncharacterized protein LOC110919870 [Helianthus annuus])

HSP 1 Score: 79.3 bits (194), Expect = 7.500e-12
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    7 LNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQ 95
            L++D I PS +    DE +  YPT  LN+        H L+LKVG PIILLRN +  +GL NGTRL++  +S RVIEA I+TG HVG+
Sbjct: 1122 LSADAICPSTNNF--DEIQAMYPTEFLNTLQFSGIPNHVLKLKVGAPIILLRNLNLKKGLCNGTRLVVSQISRRVIEAIIITGTHVGE 1207          
The following BLAST results are available for this feature:
BLAST of NO06G04740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024636396.16.800e-1352.33uncharacterized protein LOC112420871 [Medicago tru... [more]
XP_024640496.16.800e-1352.33uncharacterized protein LOC112422023 [Medicago tru... [more]
XP_021860944.12.600e-1249.43ATP-dependent DNA helicase PIF1-like, partial [Spi... [more]
XP_021836944.12.600e-1249.43ATP-dependent DNA helicase PIF1-like [Spinacia ole... [more]
XP_021971792.13.400e-1250.57uncharacterized protein LOC110866959 [Helianthus a... [more]
XP_022026205.15.700e-1250.00uncharacterized protein LOC110926864 [Helianthus a... [more]
PNY11526.15.700e-1251.16ATP-dependent DNA helicase PIF1 [Trifolium pratens... [more]
XP_008663236.17.500e-1249.41uncharacterized protein LOC103641690 [Zea mays][more]
XP_018461035.17.500e-1244.32PREDICTED: uncharacterized protein LOC108832040 [R... [more]
XP_022019810.17.500e-1250.00uncharacterized protein LOC110919870 [Helianthus a... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04740.1NO06G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04740.1NO06G04740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04740 ID=NO06G04740|Name=NO06G04740|organism=Nannochloropsis oceanica|type=gene|length=306bp
ATGCACCCTCCGCCAGAGCTCAACAGCGACCCCATTCCCCCCTCAGCAGA
CAGGCTATCGCAGGACGAGAACGAGGGTGCTTACCCCACGGCGCTCTTAA
ACTCCAAGAACCCGCCCAGCTTCGCCCTGCACCAACTACGGCTGAAAGTG
GGCATACCTATCATCCTGTTGCGGAACGCAGACCCGGTACAAGGCCTCGC
CAATGGGACACGTTTGCTCATCCTGCATCTTTCTCCTCGCGTCATCGAGG
CCAAAATTCTGACGGGGATCCACGTGGGTCAATTACAAGCTGCGACACGT
GGATAG
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protein sequence of NO06G04740.1

>NO06G04740.1-protein ID=NO06G04740.1-protein|Name=NO06G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MHPPPELNSDPIPPSADRLSQDENEGAYPTALLNSKNPPSFALHQLRLKV
GIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQLQAATR
G*
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Synonyms
Publications