NO06G04710, NO06G04710 (gene) Nannochloropsis oceanica

Overview
NameNO06G04710
Unique NameNO06G04710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr6:1349756..1350544 +

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Properties
Property NameValue
DescriptionPeptidase s8 and s53
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1349756..1350544 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Homology
BLAST of NO06G04710 vs. NCBI_GenBank
Match: CEO95568.1 (hypothetical protein PBRA_004294 [Plasmodiophora brassicae])

HSP 1 Score: 67.4 bits (163), Expect = 7.600e-8
Identity = 54/195 (27.69%), Postives = 95/195 (48.72%), Query Frame = 0
Query:    1 MLINSCVPVEKYVNLTST--IKLGPPPDKYQGFGQVQINRVLKLGTAASQPSLFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVSPGASRIVLHDLDLVASLDSQGLPIKKKYPNNLQKP-------------DNLNVLEKIRLPTPTPGDVITVNVTGTSITMTDKQAYSLVASGPF 181
            M INS V +  +V   +   + + PPP   QG+G++Q++R+L L  AA Q  L + D+R  +TG+ H + F VR +  P          F+A+L W +P     A  +++++LDL+ +     +P    +  N +               D +N +E++ +  P    +  V V+GT + +   Q Y+LV +G F
Sbjct:  624 MAINSGVTMTGWVVSLNAGPVNVDPPPSMLQGYGRMQLDRILPLAPAAFQ--LVISDNRSMVTGDHHHFCFRVRPSDRP----------FKASLVWTDPPPDLDADYLLINNLDLIVT----SIPTGALWIGNFRDSIIADNSTRLHTFMDAMNNVEQVDV-GPDQDGLFDVMVSGTHV-VVGPQPYALVVTGTF 800          
BLAST of NO06G04710 vs. NCBI_GenBank
Match: CEO97668.1 (hypothetical protein PBRA_005782 [Plasmodiophora brassicae])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 54/176 (30.68%), Postives = 78/176 (44.32%), Query Frame = 0
Query:   22 GPPPDKYQGFGQVQINRVLKLGTAASQPSLFVV-------DSRETMTGEVHTYKFTVRSNYV--PPTGSDTMNNAFEATLAWIEPEVSPGASRIVLHDLDLVASLDSQGLPIKKKYPNNLQKPDNLNVLEKIRLPTPT-PGDVITVNVTGTSITM------TDKQAYSLVASGPFV 182
            G PPD  QGFG+V++NRVL      S   +  +       D   + +   HTY F V   Y   PP            TL W +     G S  ++ DLDL  +L +   P    Y N     D +N +E++ L +   PG  ITV V+G ++ +      +  Q Y+LVA+G  V
Sbjct:  624 GTPPDNQQGFGRVRLNRVLYFADEDSTAHVTFMPRGPNRADPVLSQSNHTHTYTFCVSYLYTLWPP----------RFTLVWTDAPQIAGTSPTIIQDLDLTVTLSTS--PAATIYANGGTGYDRVNTVERVVLDSNVQPGVEITVTVSGANLPVQMPGYPSSTQPYALVATGRIV 787          
BLAST of NO06G04710 vs. NCBI_GenBank
Match: PSC76614.1 (Serine protease ABC transporter B family tagA isoform B [Micractinium conductrix])

HSP 1 Score: 64.3 bits (155), Expect = 6.400e-7
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 0
Query:   19 IKLGPPPDKYQGFGQVQINRVLKLGTAASQPSLFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVSPGASRIVLHDLDL-VASLDSQGLPI--KKKYPNNLQKPDNLNVLEKIRLPTPTPGDVITVNVTGTSI-TMTDKQAYSLVASGPF 181
            + + PPP   QG+G+V +   + L   A+ P L V+D+     GE H Y   +R+N  P             TL W +        +++++DLDL V +    G+P+       +N   PD+ N +E++ L T  PG V  V V G+SI T      Y+LV +G F
Sbjct:  818 LPIDPPPSFRQGYGRVWLGNSVYLAGNANSPQLQVLDAVPINQGESHEY--CIRANGGP----------LSITLVWADFPGDVAGGKVLVNDLDLSVRAAGLNGVPLLGNGGSVSNAANPDSENNVEQVALTTLPPGPV-AVTVRGSSIFTAAGAPQYALVVNGDF 970          
BLAST of NO06G04710 vs. NCBI_GenBank
Match: PSC76615.1 (Serine protease ABC transporter B family tagA isoform A [Micractinium conductrix])

HSP 1 Score: 64.3 bits (155), Expect = 6.400e-7
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = 0
Query:   19 IKLGPPPDKYQGFGQVQINRVLKLGTAASQPSLFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVSPGASRIVLHDLDL-VASLDSQGLPI--KKKYPNNLQKPDNLNVLEKIRLPTPTPGDVITVNVTGTSI-TMTDKQAYSLVASGPF 181
            + + PPP   QG+G+V +   + L   A+ P L V+D+     GE H Y   +R+N  P             TL W +        +++++DLDL V +    G+P+       +N   PD+ N +E++ L T  PG V  V V G+SI T      Y+LV +G F
Sbjct:  818 LPIDPPPSFRQGYGRVWLGNSVYLAGNANSPQLQVLDAVPINQGESHEY--CIRANGGP----------LSITLVWADFPGDVAGGKVLVNDLDLSVRAAGLNGVPLLGNGGSVSNAANPDSENNVEQVALTTLPPGPV-AVTVRGSSIFTAAGAPQYALVVNGDF 970          
The following BLAST results are available for this feature:
BLAST of NO06G04710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
CEO95568.17.600e-827.69hypothetical protein PBRA_004294 [Plasmodiophora b... [more]
CEO97668.11.300e-730.68hypothetical protein PBRA_005782 [Plasmodiophora b... [more]
PSC76614.16.400e-730.72Serine protease ABC transporter B family tagA isof... [more]
PSC76615.16.400e-730.72Serine protease ABC transporter B family tagA isof... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04710.1NO06G04710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04710.1NO06G04710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04710 ID=NO06G04710|Name=NO06G04710|organism=Nannochloropsis oceanica|type=gene|length=789bp
ATGCTTATCAATTCATGTGTCCCTGTAGAGAAGTATGTCAACCTCACGTC
CACCATCAAACTAGGCCCTCCTCCCGATAAATACCAGGGCTTTGGACAAG
TCCAAATAAATAGGGTCTTGAAACTGGGAACCGCTGCGTCTCAGCCGTCC
CTGTTTGTCGTGGACTCGAGAGAGACGATGACTGGGGAGGTGCACACGTA
CAAGTTCACCGTCCGATCAAATTACGTGCCCCCGACGGGATCTGACACGA
TGAATAATGCTTTTGAGGCGACATTGGCATGGATAGAACCTGAGGTCTCG
CCGGGGGCTTCCAGGATCGTGTTGCATGATCTCGACCTGGTGGCCAGTCT
GGACTCTCAGGGACTTCCTATCAAGAAAAAATACCCCAACAATCTCCAGA
AGCCCGATAATCTGAACGTGCTCGAGAAAATTCGCCTTCCGACCCCGACT
CCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGAC
AGATAAGCAGGCGTATTCTTTGGTTGCGAGTGGCCCCTTCGTATCTGCCG
CGTGGTACTGTCAAGATAATCGGGACCATGTGCCCTGGGAACATGGTGCT
TCGTGGAGAACGGAGCACTGTACTCTGCCGTGCACAGGAAGATTCAAGAA
AAGGCCCTTGTGTTGTGAGACACTTGGCGGTCGACGTGGGAGCTCGTTCA
GAGACGGTAATACGTGCCATCCATCTCTGGCAAATGCCTCTAAGTGCTCG
GGCCTGACGCCCCCTCAAGAATGTCCACCATCAAACTAG
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protein sequence of NO06G04710.1

>NO06G04710.1-protein ID=NO06G04710.1-protein|Name=NO06G04710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MLINSCVPVEKYVNLTSTIKLGPPPDKYQGFGQVQINRVLKLGTAASQPS
LFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVS
PGASRIVLHDLDLVASLDSQGLPIKKKYPNNLQKPDNLNVLEKIRLPTPT
PGDVITVNVTGTSITMTDKQAYSLVASGPFVSAAWYCQDNRDHVPWEHGA
SWRTEHCTLPCTGRFKKRPLCCETLGGRRGSSFRDGNTCHPSLANASKCS
GLTPPQECPPSN*
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Synonyms
Publications