NO06G04710.1, NO06G04710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04710.1
Unique NameNO06G04710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length789
Alignment locationchr6:1349756..1350544 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1349756..1350544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04710.1 vs.
Match: EWM27126.1 (peptidase s8 and s53, partial [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 2.700e-37
Identity = 98/263 (37.26%), Postives = 139/263 (52.85%), Query Frame = 0 
Query:    1 MLINSCVPVEKY-VNLTSTIKLGPPPDKYQGFGQVQINRVLKLGT--AASQPSLFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVSPGASRIVLHDLDLVASLDSQGLPIKKKYPNNLQKPDNLNVLEKIRLPTPTPGDVITVNVTGTSITMTDKQAYSLVASGPFVSAAWYCQDNRDHVPWEHGASWRTEHCTLPCTGR-FKKRPLCCETLGGRRGSSFRDGNTCHPSLANASKCSGLTPPQECP 260
            MLINS VP+  +  N  + + LG PPD YQG+G++++  VL + +  A + P+L+VV+       E H YKF++     P TG   +    + TL WI+P+ +  ++  VLHDLDL+     +G      +PN     DN+N +EK+ L +PTPGD +TV VT TS+    +Q Y+L ASG FVS AWYCQ  R       G  + TE+C   C    F K P+CC+   G    S         + A   +C   T P ECP
Sbjct:  138 MLINSAVPMAAFDFNNGTLLPLGLPPDVYQGYGRIKLADVLPIKSLGATTTPNLYVVNGASIKEEEKHVYKFSI-----PATGKSPV----KITLVWIDPDTTASSATTVLHDLDLMVYSQKEG---SSYFPNGRTNADNVNTVEKVALYSPTPGDTLTVTVTATSVATRPEQRYALAASGNFVSGAWYCQSPRSS---RAGEVFTTENCDQSCDNNGFLKEPVCCDASAG----SVCSAQEIAAAAAVGLECDAATRPIECP 381
The following BLAST results are available for this feature:
BLAST of NO06G04710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27126.12.700e-3737.26peptidase s8 and s53, partial [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04710NO06G04710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04710.1NO06G04710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04710.1.cds1NO06G04710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04710.1 ID=NO06G04710.1|Name=NO06G04710.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ATGCTTATCAATTCATGTGTCCCTGTAGAGAAGTATGTCAACCTCACGTC
CACCATCAAACTAGGCCCTCCTCCCGATAAATACCAGGGCTTTGGACAAG
TCCAAATAAATAGGGTCTTGAAACTGGGAACCGCTGCGTCTCAGCCGTCC
CTGTTTGTCGTGGACTCGAGAGAGACGATGACTGGGGAGGTGCACACGTA
CAAGTTCACCGTCCGATCAAATTACGTGCCCCCGACGGGATCTGACACGA
TGAATAATGCTTTTGAGGCGACATTGGCATGGATAGAACCTGAGGTCTCG
CCGGGGGCTTCCAGGATCGTGTTGCATGATCTCGACCTGGTGGCCAGTCT
GGACTCTCAGGGACTTCCTATCAAGAAAAAATACCCCAACAATCTCCAGA
AGCCCGATAATCTGAACGTGCTCGAGAAAATTCGCCTTCCGACCCCGACT
CCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGAC
AGATAAGCAGGCGTATTCTTTGGTTGCGAGTGGCCCCTTCGTATCTGCCG
CGTGGTACTGTCAAGATAATCGGGACCATGTGCCCTGGGAACATGGTGCT
TCGTGGAGAACGGAGCACTGTACTCTGCCGTGCACAGGAAGATTCAAGAA
AAGGCCCTTGTGTTGTGAGACACTTGGCGGTCGACGTGGGAGCTCGTTCA
GAGACGGTAATACGTGCCATCCATCTCTGGCAAATGCCTCTAAGTGCTCG
GGCCTGACGCCCCCTCAAGAATGTCCACCATCAAACTAG
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protein sequence of NO06G04710.1

>NO06G04710.1-protein ID=NO06G04710.1-protein|Name=NO06G04710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MLINSCVPVEKYVNLTSTIKLGPPPDKYQGFGQVQINRVLKLGTAASQPS
LFVVDSRETMTGEVHTYKFTVRSNYVPPTGSDTMNNAFEATLAWIEPEVS
PGASRIVLHDLDLVASLDSQGLPIKKKYPNNLQKPDNLNVLEKIRLPTPT
PGDVITVNVTGTSITMTDKQAYSLVASGPFVSAAWYCQDNRDHVPWEHGA
SWRTEHCTLPCTGRFKKRPLCCETLGGRRGSSFRDGNTCHPSLANASKCS
GLTPPQECPPSN*
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mRNA from alignment at chr6:1349756..1350544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04710.1 ID=NO06G04710.1|Name=NO06G04710.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp|location=Sequence derived from alignment at chr6:1349756..1350544+ (Nannochloropsis oceanica)
ATGCTTATCAATTCATGTGTCCCTGTAGAGAAGTATGTCAACCTCACGTC
CACCATCAAACTAGGCCCTCCTCCCGATAAATACCAGGGCTTTGGACAAG
TCCAAATAAATAGGGTCTTGAAACTGGGAACCGCTGCGTCTCAGCCGTCC
CTGTTTGTCGTGGACTCGAGAGAGACGATGACTGGGGAGGTGCACACGTA
CAAGTTCACCGTCCGATCAAATTACGTGCCCCCGACGGGATCTGACACGA
TGAATAATGCTTTTGAGGCGACATTGGCATGGATAGAACCTGAGGTCTCG
CCGGGGGCTTCCAGGATCGTGTTGCATGATCTCGACCTGGTGGCCAGTCT
GGACTCTCAGGGACTTCCTATCAAGAAAAAATACCCCAACAATCTCCAGA
AGCCCGATAATCTGAACGTGCTCGAGAAAATTCGCCTTCCGACCCCGACT
CCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGAC
AGATAAGCAGGCGTATTCTTTGGTTGCGAGTGGCCCCTTCGTATCTGCCG
CGTGGTACTGTCAAGATAATCGGGACCATGTGCCCTGGGAACATGGTGCT
TCGTGGAGAACGGAGCACTGTACTCTGCCGTGCACAGGAAGATTCAAGAA
AAGGCCCTTGTGTTGTGAGACACTTGGCGGTCGACGTGGGAGCTCGTTCA
GAGACGGTAATACGTGCCATCCATCTCTGGCAAATGCCTCTAAGTGCTCG
GGCCTGACGCCCCCTCAAGAATGTCCACCATCAAACTAG
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Coding sequence (CDS) from alignment at chr6:1349756..1350544+

>NO06G04710.1 ID=NO06G04710.1|Name=NO06G04710.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr6:1349756..1350544+ (Nannochloropsis oceanica)
ATGCTTATCAATTCATGTGTCCCTGTAGAGAAGTATGTCAACCTCACGTC
CACCATCAAACTAGGCCCTCCTCCCGATAAATACCAGGGCTTTGGACAAG
TCCAAATAAATAGGGTCTTGAAACTGGGAACCGCTGCGTCTCAGCCGTCC
CTGTTTGTCGTGGACTCGAGAGAGACGATGACTGGGGAGGTGCACACGTA
CAAGTTCACCGTCCGATCAAATTACGTGCCCCCGACGGGATCTGACACGA
TGAATAATGCTTTTGAGGCGACATTGGCATGGATAGAACCTGAGGTCTCG
CCGGGGGCTTCCAGGATCGTGTTGCATGATCTCGACCTGGTGGCCAGTCT
GGACTCTCAGGGACTTCCTATCAAGAAAAAATACCCCAACAATCTCCAGA
AGCCCGATAATCTGAACGTGCTCGAGAAAATTCGCCTTCCGACCCCGACT
CCGGGCGACGTGATTACGGTGAACGTCACGGGAACGTCCATTACGATGAC
AGATAAGCAGGCGTATTCTTTGGTTGCGAGTGGCCCCTTCGTATCTGCCG
CGTGGTACTGTCAAGATAATCGGGACCATGTGCCCTGGGAACATGGTGCT
TCGTGGAGAACGGAGCACTGTACTCTGCCGTGCACAGGAAGATTCAAGAA
AAGGCCCTTGTGTTGTGAGACACTTGGCGGTCGACGTGGGAGCTCGTTCA
GAGACGGTAATACGTGCCATCCATCTCTGGCAAATGCCTCTAAGTGCTCG
GGCCTGACGCCCCCTCAAGAATGTCCACCATCAAACTAG
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Synonyms
Publications