NO06G04690, NO06G04690 (gene) Nannochloropsis oceanica

Overview
NameNO06G04690
Unique NameNO06G04690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr6:1347143..1347964 -

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Properties
Property NameValue
DescriptionPIF1 helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1347143..1347964 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003678DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003840DNA_helicase
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_022031893.1 (uncharacterized protein LOC110932951 [Helianthus annuus])

HSP 1 Score: 188.3 bits (477), Expect = 3.100e-44
Identity = 105/232 (45.26%), Postives = 140/232 (60.34%), Query Frame = 0
Query:    8 PPELNY-DPIRLLDHVYGDFNDAR---NTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDENEGA-----YPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTH 231
            PPE    DP   L ++     D +   N +   +++RAI+ PKN  VD  +D      PGE  +Y S D +     +G+     YP E LN  N  G   H LRLK   PI+L+RN DP  GL NGTRLL+  L PRVIEA+I+TG  VG+ VY+PRI+     DTK +PF+  R Q+PV+  +AMTINK Q QS +KV +YLP PVF+HGQLYVALSR   P ++ ++ ++
Sbjct: 1300 PPEFTLKDPNDGLQNLISFIYDTQLLANPSPAAILERAIICPKNDTVDEINDLVHAMSPGECTSYFSTDSMVPHSKDGSEIDAMYPPEYLNVLNFNGIPSHCLRLKRNSPIMLMRNMDPKNGLCNGTRLLVTQLLPRVIEARIITGTSVGKKVYIPRINF--VHDTKDIPFVFTRRQFPVKICYAMTINKSQGQSLKKVGLYLPEPVFSHGQLYVALSRATSPNSLKILTSN 1529          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: OAJ11428.1 (hypothetical protein A4X03_g7067 [Tilletia caries])

HSP 1 Score: 188.0 bits (476), Expect = 4.000e-44
Identity = 108/242 (44.63%), Postives = 142/242 (58.68%), Query Frame = 0
Query:   14 DPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDENEG--AYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGI--HVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSK 252
            +P +L++ VYGD         +    RAIL  +N DVD ++ H +    G+ K   SADR    + +    +P E L + NP G  PHQL +KVG P++LLRN DP  GL NGTRLL+ H+  +V+EAKILTG   H G+ V++PRI   + D    +PFIL R QYP++  FAMTINK Q QS  +V I L  P FAHGQLYVALSR  DP+ +  ++          P    ATPN+V K
Sbjct:  778 EPTKLINAVYGDHATTAEDRERYWSRRAILHARNIDVDDTNTHVLGMISGQVKVVHSADRALTPDGDSHPGFPPETLATINPSGMPPHQLAVKVGTPVMLLRNLDPSHGLCNGTRLLLTHIGNKVMEAKILTGASKHKGKSVFIPRIRNRSGDGV--LPFILDRLQYPLKLCFAMTINKSQGQSIHRVGIDLRYPAFAHGQLYVALSRTTDPSTVRCLL----------PKGHTATPNIVLK 1007          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021961405.1 (uncharacterized protein LOC110857109 [Folsomia candida])

HSP 1 Score: 188.0 bits (476), Expect = 4.000e-44
Identity = 104/227 (45.81%), Postives = 140/227 (61.67%), Query Frame = 0
Query:    9 PELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDE--NEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPL 234
            PE       ++  ++G+     N  V+    RAIL P N +VD  ++  ++   GE KTY+S+D L  DE  +   YP E LNS  P G APH+L LK G  I+LLRN +  +GL NGTRL I+ L P +I AK+LTG   G VV++PRI + T+ D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYLP+PVF HGQLYVA SR+    ++  + T  P+
Sbjct: 1132 PESMLTSENIIKDIFGETLTPDN--VEQFSQRAILCPTNDEVDNINEKILEILEGEAKTYISSDSLVTDEDSDRNDYPVEFLNSLKPSGSAPHELNLKKGALIMLLRNLNTKRGLCNGTRLKIIDLKPNLIIAKVLTGSAEGNVVFIPRIDLITDSD---LPFQLKRRQFPVKLAFAMTINKSQGQTMDKVGIYLPTPVFGHGQLYVAFSRVRRSCDVKKVATMNPI 1353          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021971105.1 (uncharacterized protein LOC110866060 [Helianthus annuus])

HSP 1 Score: 188.0 bits (476), Expect = 4.000e-44
Identity = 97/219 (44.29%), Postives = 138/219 (63.01%), Query Frame = 0
Query:   17 RLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRL-----AQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIH-MHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVT 230
            +L+  +Y D +   N T  NL +RAI+ PKN   D  ++  +   PGE  TYLS D +     +Q + +  YP E LN  N  G   H L+LK+  P+IL+RN D   GL NGTRLL+  L PR+IEA+I+TG  +G  VY+PRI+ +H  +D   +PF+  R Q+P++  +AMTINK Q QS  K+A+YLP P+F+HGQLYVALSR    + + +++T
Sbjct: 1258 QLIKFIYDD-DILHNPTASNLSERAIVCPKNETADEINELVLASSPGECSTYLSVDSITPHSHSQGDTDLMYPPEYLNLLNFQGIPSHCLKLKINTPVILMRNIDQKSGLCNGTRLLVSQLLPRIIEARIITGTAIGHRVYIPRINFVHKTND---LPFVFTRRQFPIKTCYAMTINKSQGQSLNKIAVYLPEPIFSHGQLYVALSRATSASGLKVLIT 1472          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_009145634.2 (PREDICTED: uncharacterized protein LOC103869326 [Brassica rapa])

HSP 1 Score: 187.6 bits (475), Expect = 5.200e-44
Identity = 111/246 (45.12%), Postives = 150/246 (60.98%), Query Frame = 0
Query:   14 DPIR-LLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDE----NEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVF 255
            DPIR ++  VYG+ +  R    K   +RAIL P+N DVD  +++ +    GE+++YLS+D +   +    ++  Y  E LNS    G   H L+LK+G PI+LLRN DP  GL NGTRLL+  L+  VI+AK +TG  VGQ V LPR  M  +      PF +RR Q+PV  AFAMTINK Q Q+ QKV +YLP PVF+HGQLYVA+SR+   T + +++T           P  +T NVV K+VF
Sbjct: 1275 DPIREIVKEVYGN-SYTRERNPKFYQERAILSPRNEDVDKINEYMLSQIKGEERSYLSSDSIDTSDTSKIDDMVYTQEYLNSIKISGLPNHDLKLKIGAPIMLLRNIDPKGGLCNGTRLLVTQLANHVIQAKFITGDKVGQNVLLPR--MFVSPPEARFPFRMRRRQFPVALAFAMTINKSQGQTLQKVGLYLPRPVFSHGQLYVAVSRVTSRTGLKILIT------DEKGNPQKSTMNVVYKEVF 1511          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021970357.1 (uncharacterized protein LOC110865421 [Helianthus annuus])

HSP 1 Score: 187.6 bits (475), Expect = 5.200e-44
Identity = 98/217 (45.16%), Postives = 133/217 (61.29%), Query Frame = 0
Query:   18 LLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDENEGA-----YPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVT 230
            L+  VY D +   N   +NL +RAI+ PKN   D  ++  +   PGE +TY+S D +       A     YP E LN  + P   PH+L LKV  P+ILLRN +   GL NGTRLL+  L PR+IEA ++TG   G+ VY+PRI    ND  K +PF+  R Q+P++  +AMTINK Q QS +K+ +YLP PVF HGQLYVALSR   P ++ +++T
Sbjct:  934 LIRFVYND-SILANPCAENLSNRAIVCPKNDTADQINNIILNMIPGESRTYISHDSMVPHMQNAADCETLYPQEYLNELSFPSIPPHKLNLKVNTPVILLRNINQTLGLCNGTRLLVSQLLPRIIEAYVITGTSTGRRVYIPRIKFVQND--KDMPFVFTRRQFPLKICYAMTINKSQGQSLKKIGVYLPQPVFTHGQLYVALSRATSPNSLKILLT 1147          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_024314275.1 (ATP-dependent DNA helicase PIF1-like [Brachypodium distachyon])

HSP 1 Score: 187.6 bits (475), Expect = 5.200e-44
Identity = 109/241 (45.23%), Postives = 151/241 (62.66%), Query Frame = 0
Query:   17 RLLDHVYGDFNDARNTTVKNLI-DRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMM-VTHPPLHGQPPPA--PTLATPNVVSKQV 254
            RL++HV+ D +  +N T  N I  RAIL  +N +VD  +   ++ FPGE+  Y S DR A D+    YP++ LNS  P    PH L+LK+  PIILLRN DP  GL NGTRL++  L    I+A+I+ G + G+ V+LPRI +  +DD + +PF  +R Q+PVR +FAMTINK Q Q+   V +YLP PV++HGQLYVALSR     NI ++ +      G+   A  P  +TPN+V K+V
Sbjct:  306 RLIEHVFPDLD--KNLTNPNYITSRAILTTRNDNVDRINMKMIERFPGEEVIYYSFDR-AADDPHNYYPSDFLNSLTPNWLPPHVLKLKINCPIILLRNIDPANGLCNGTRLVVRGLQKNAIDAEIIVGQYSGRRVFLPRIPLCPSDD-EMLPFRFKRKQFPVRLSFAMTINKAQGQTIPNVGVYLPDPVYSHGQLYVALSRATSRRNIKILAIPDKDKSGRTKSAKPPRTSTPNIVYKEV 542          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_013639239.1 (PREDICTED: uncharacterized protein LOC106344395 [Brassica oleracea var. oleracea])

HSP 1 Score: 187.2 bits (474), Expect = 6.800e-44
Identity = 104/256 (40.62%), Postives = 154/256 (60.16%), Query Frame = 0
Query:   14 DPIR-LLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRL-----AQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVFMYMKPPQSL 264
            DP+  +++  YGD N   N+   +  D+AIL P+N  VD  + + +    G  + Y S+D         D+N   Y  E LNS    G   H+L LKVG P++LLRN +  +GL NGTR+++ H+  R+++AKI+TG H+G+ V +PRI +   D+TK +PF LRR Q+P+R  +AMTINK Q QS +KV +YLP PVF+HGQLYVALSR+   T +T++ T          +  +   N+V K++F  + P + L
Sbjct:  784 DPLEGVVEAAYGDINKPTNSQT-SYTDKAILTPRNETVDEINAYIISRTDGVTRDYFSSDSFEISDTTSDQNNTLYAIEYLNSLEFSGLPSHRLALKVGAPVMLLRNINQKKGLCNGTRMILTHVGNRILKAKIITGSHIGEEVLIPRIVL-LYDETK-LPFTLRRRQFPIRLCYAMTINKSQGQSLKKVTLYLPKPVFSHGQLYVALSRVTSKTGLTIIKTE--------GSHQMRVKNIVFKEIFKSLIPNKGL 1028          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021958962.1 (uncharacterized protein LOC110854839 [Folsomia candida])

HSP 1 Score: 187.2 bits (474), Expect = 6.800e-44
Identity = 107/248 (43.15%), Postives = 151/248 (60.89%), Query Frame = 0
Query:    9 PELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDE--NEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQ-PPPAPTLATPNVVSKQV 254
            PE       ++  ++GD     N  V+     AIL P N +VD  ++  +    GE KTYLS D +  DE  ++  YPTE LN+ NP G A H+L+LKVG  I+LLRN +  +GL NGTRL++  L P +I AK++TG   G +V++PRI + T+ D   +PF LRR Q+P++ AFAMTINK Q Q+  KV IYL +PVF+HGQLYVA SR+    ++ + V +   HG+    +  + T NVV K +
Sbjct: 1389 PEAMLASENIIKDIFGDSLTLEN--VEQFSKMAILCPTNAEVDKINEQVLNILQGECKTYLSTDSIMTDEDSDKDDYPTEFLNTLNPSGSASHELKLKVGSLIMLLRNLNTKRGLCNGTRLVVAELKPNLIIAKVITGSAKGNIVFIPRIDLITDSD---LPFRLRRRQFPIKLAFAMTINKSQGQTLDKVGIYLATPVFSHGQLYVAFSRVRRSCDVKVYVRNTAEHGKLLENSNKVFTRNVVFKDI 1631          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021980558.1 (uncharacterized protein LOC110876704 [Helianthus annuus])

HSP 1 Score: 187.2 bits (474), Expect = 6.800e-44
Identity = 96/219 (43.84%), Postives = 138/219 (63.01%), Query Frame = 0
Query:   17 RLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRL-----AQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIH-MHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVT 230
            +L+  +Y D +   N T  NL +RAI+ PKN   D  ++  +   PGE  TYLS D +     +Q + +  YP + LN  N  G   H L+LK+  P+IL+RN D   GL N TRLL+  L PR+IEA+I+TG  +G  VY+PRI+ +H  +D   +PF+  R Q+P++  +AMTINK Q QS  K+A+YLP P+F+HGQLYVALSR   P+ + +++T
Sbjct:  932 QLIKFIYDD-DILHNPTASNLSERAIVCPKNETADEINELVLASSPGECSTYLSVDSITPHSHSQGDTDLMYPPKYLNLLNFQGIPSHCLKLKINTPVILMRNIDQKSGLCNSTRLLVSQLLPRIIEARIITGTAIGHRVYIPRINFVHKTND---LPFVFTRRQFPIKTCYAMTINKSQGQSLNKIAVYLPEPIFSHGQLYVALSRATSPSGLKVLIT 1146          
The following BLAST results are available for this feature:
BLAST of NO06G04690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022031893.13.100e-4445.26uncharacterized protein LOC110932951 [Helianthus a... [more]
OAJ11428.14.000e-4444.63hypothetical protein A4X03_g7067 [Tilletia caries][more]
XP_021961405.14.000e-4445.81uncharacterized protein LOC110857109 [Folsomia can... [more]
XP_021971105.14.000e-4444.29uncharacterized protein LOC110866060 [Helianthus a... [more]
XP_009145634.25.200e-4445.12PREDICTED: uncharacterized protein LOC103869326 [B... [more]
XP_021970357.15.200e-4445.16uncharacterized protein LOC110865421 [Helianthus a... [more]
XP_024314275.15.200e-4445.23ATP-dependent DNA helicase PIF1-like [Brachypodium... [more]
XP_013639239.16.800e-4440.63PREDICTED: uncharacterized protein LOC106344395 [B... [more]
XP_021958962.16.800e-4443.15uncharacterized protein LOC110854839 [Folsomia can... [more]
XP_021980558.16.800e-4443.84uncharacterized protein LOC110876704 [Helianthus a... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04690.1NO06G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04690.1NO06G04690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04690 ID=NO06G04690|Name=NO06G04690|organism=Nannochloropsis oceanica|type=gene|length=822bp
ATGCCCCCTTTCATGCGCCCTCCGCCAGAGCTGAACTACGACCCCATTCG
GCTCCTCGACCACGTCTACGGGGACTTCAATGATGCGCGCAATACAACGG
TAAAAAATCTCATTGATCGCGCCATCCTCATCCCCAAGAACAGGGACGTT
GACGCCTCGAGCGACCACGCCGTCCAGTTTTTCCCCGGAGAAAAAAAGAC
TTATCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAGGGTGCTTACC
CCACGGAGCTCTTAAACTCCAAGAACCCGCCCGGCTTCGCCCCGCATCAA
CTACGGCTAAAAGTGGGCATACCTATCATCCTGTTGCGGAACGCAGACCC
GGTTCAAGGCCTTGCCAATGGGACACGTTTGCTCATCCTGCATCTTTCTC
CTCGCGTCATCGAGGCCAAAATTCTGACGGGGATCCACGTGGGTCAAGTT
GTCTACCTTCCCAGGATCCACATGCACACCAACGACGACACCAAGGGCGT
ACCTTTCATCCTCCGCCGAGGTCAGTACCCGGTCCGGCCTGCCTTCGCCA
TGACCATAAACAAATTCCAGAGACAGTCCTTCCAAAAGGTCGCAATCTAC
TTGCCGTCCCCAGTATTTGCCCACGGTCAGCTCTATGTCGCGCTTTCGAG
AATAGGAGACCCCACCAACATCACCATGATGGTCACCCACCCTCCTCTCC
ACGGCCAGCCCCCTCCCGCTCCCACACTTGCCACACCAAATGTAGTCTCT
AAGCAAGTGTTCATGTACATGAAACCGCCACAGTCACTACCACAGCAACC
GGAAGACATGATGGAAGTATAG
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protein sequence of NO06G04690.1

>NO06G04690.1-protein ID=NO06G04690.1-protein|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPPFMRPPPELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDV
DASSDHAVQFFPGEKKTYLSADRLAQDENEGAYPTELLNSKNPPGFAPHQ
LRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQV
VYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIY
LPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVS
KQVFMYMKPPQSLPQQPEDMMEV*
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Synonyms
Publications