NO06G04690.1, NO06G04690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04690.1
Unique NameNO06G04690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr6:1347143..1347964 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1347143..1347964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04690.1 vs.
Match: OXA61706.1 (Failed axon connections [Folsomia candida])

HSP 1 Score: 198.0 bits (502), Expect = 3.900e-47
Identity = 108/225 (48.00%), Postives = 141/225 (62.67%), Query Frame = 0 
Query:   34 VKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQD--ENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLA-TPNVVSKQVFM 256
            V+    RAIL P N DVD S+D  +    G+ KTY+S D L  D   +   YP E LNS NP G  PH+L+LKVG  IILLRN +  +GL NGTRL+++ L   +I AK+LTG   G +V++PRI + TN D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYLP+PVF+HGQLYVA SR+    ++ + V      G+      +  TPNVV K + M
Sbjct: 1003 VETFSSRAILCPTNADVDKSNDQVLDILIGDNKTYISTDSLMTDVDSDRDDYPVEFLNSLNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTRLVVVELKTNLILAKVLTGSSEGNIVFIPRIDLTTNSD---LPFTLKRRQFPVKRAFAMTINKSQGQTLDKVGIYLPNPVFSHGQLYVAFSRVRRSCDVKVYVVDTIEQGKLIQGSNVVFTPNVVYKAILM 1224
The following BLAST results are available for this feature:
BLAST of NO06G04690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OXA61706.13.900e-4748.00Failed axon connections [Folsomia candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04690NO06G04690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04690.1NO06G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04690.1.cds1NO06G04690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04690.1 ID=NO06G04690.1|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ATGCCCCCTTTCATGCGCCCTCCGCCAGAGCTGAACTACGACCCCATTCG
GCTCCTCGACCACGTCTACGGGGACTTCAATGATGCGCGCAATACAACGG
TAAAAAATCTCATTGATCGCGCCATCCTCATCCCCAAGAACAGGGACGTT
GACGCCTCGAGCGACCACGCCGTCCAGTTTTTCCCCGGAGAAAAAAAGAC
TTATCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAGGGTGCTTACC
CCACGGAGCTCTTAAACTCCAAGAACCCGCCCGGCTTCGCCCCGCATCAA
CTACGGCTAAAAGTGGGCATACCTATCATCCTGTTGCGGAACGCAGACCC
GGTTCAAGGCCTTGCCAATGGGACACGTTTGCTCATCCTGCATCTTTCTC
CTCGCGTCATCGAGGCCAAAATTCTGACGGGGATCCACGTGGGTCAAGTT
GTCTACCTTCCCAGGATCCACATGCACACCAACGACGACACCAAGGGCGT
ACCTTTCATCCTCCGCCGAGGTCAGTACCCGGTCCGGCCTGCCTTCGCCA
TGACCATAAACAAATTCCAGAGACAGTCCTTCCAAAAGGTCGCAATCTAC
TTGCCGTCCCCAGTATTTGCCCACGGTCAGCTCTATGTCGCGCTTTCGAG
AATAGGAGACCCCACCAACATCACCATGATGGTCACCCACCCTCCTCTCC
ACGGCCAGCCCCCTCCCGCTCCCACACTTGCCACACCAAATGTAGTCTCT
AAGCAAGTGTTCATGTACATGAAACCGCCACAGTCACTACCACAGCAACC
GGAAGACATGATGGAAGTATAG
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protein sequence of NO06G04690.1

>NO06G04690.1-protein ID=NO06G04690.1-protein|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPPFMRPPPELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDV
DASSDHAVQFFPGEKKTYLSADRLAQDENEGAYPTELLNSKNPPGFAPHQ
LRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQV
VYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIY
LPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVS
KQVFMYMKPPQSLPQQPEDMMEV*
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mRNA from alignment at chr6:1347143..1347964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04690.1 ID=NO06G04690.1|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at chr6:1347143..1347964- (Nannochloropsis oceanica)
ATGCCCCCTTTCATGCGCCCTCCGCCAGAGCTGAACTACGACCCCATTCG
GCTCCTCGACCACGTCTACGGGGACTTCAATGATGCGCGCAATACAACGG
TAAAAAATCTCATTGATCGCGCCATCCTCATCCCCAAGAACAGGGACGTT
GACGCCTCGAGCGACCACGCCGTCCAGTTTTTCCCCGGAGAAAAAAAGAC
TTATCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAGGGTGCTTACC
CCACGGAGCTCTTAAACTCCAAGAACCCGCCCGGCTTCGCCCCGCATCAA
CTACGGCTAAAAGTGGGCATACCTATCATCCTGTTGCGGAACGCAGACCC
GGTTCAAGGCCTTGCCAATGGGACACGTTTGCTCATCCTGCATCTTTCTC
CTCGCGTCATCGAGGCCAAAATTCTGACGGGGATCCACGTGGGTCAAGTT
GTCTACCTTCCCAGGATCCACATGCACACCAACGACGACACCAAGGGCGT
ACCTTTCATCCTCCGCCGAGGTCAGTACCCGGTCCGGCCTGCCTTCGCCA
TGACCATAAACAAATTCCAGAGACAGTCCTTCCAAAAGGTCGCAATCTAC
TTGCCGTCCCCAGTATTTGCCCACGGTCAGCTCTATGTCGCGCTTTCGAG
AATAGGAGACCCCACCAACATCACCATGATGGTCACCCACCCTCCTCTCC
ACGGCCAGCCCCCTCCCGCTCCCACACTTGCCACACCAAATGTAGTCTCT
AAGCAAGTGTTCATGTACATGAAACCGCCACAGTCACTACCACAGCAACC
GGAAGACATGATGGAAGTATAG
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Coding sequence (CDS) from alignment at chr6:1347143..1347964-

>NO06G04690.1 ID=NO06G04690.1|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr6:1347143..1347964- (Nannochloropsis oceanica)
ATGCCCCCTTTCATGCGCCCTCCGCCAGAGCTGAACTACGACCCCATTCG
GCTCCTCGACCACGTCTACGGGGACTTCAATGATGCGCGCAATACAACGG
TAAAAAATCTCATTGATCGCGCCATCCTCATCCCCAAGAACAGGGACGTT
GACGCCTCGAGCGACCACGCCGTCCAGTTTTTCCCCGGAGAAAAAAAGAC
TTATCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAGGGTGCTTACC
CCACGGAGCTCTTAAACTCCAAGAACCCGCCCGGCTTCGCCCCGCATCAA
CTACGGCTAAAAGTGGGCATACCTATCATCCTGTTGCGGAACGCAGACCC
GGTTCAAGGCCTTGCCAATGGGACACGTTTGCTCATCCTGCATCTTTCTC
CTCGCGTCATCGAGGCCAAAATTCTGACGGGGATCCACGTGGGTCAAGTT
GTCTACCTTCCCAGGATCCACATGCACACCAACGACGACACCAAGGGCGT
ACCTTTCATCCTCCGCCGAGGTCAGTACCCGGTCCGGCCTGCCTTCGCCA
TGACCATAAACAAATTCCAGAGACAGTCCTTCCAAAAGGTCGCAATCTAC
TTGCCGTCCCCAGTATTTGCCCACGGTCAGCTCTATGTCGCGCTTTCGAG
AATAGGAGACCCCACCAACATCACCATGATGGTCACCCACCCTCCTCTCC
ACGGCCAGCCCCCTCCCGCTCCCACACTTGCCACACCAAATGTAGTCTCT
AAGCAAGTGTTCATGTACATGAAACCGCCACAGTCACTACCACAGCAACC
GGAAGACATGATGGAAGTATAG
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Synonyms
Publications