NO06G04690, NO06G04690 (gene) Nannochloropsis oceanica

Overview
NameNO06G04690
Unique NameNO06G04690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr6:1347143..1347964 -

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Properties
Property NameValue
DescriptionPIF1 helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1347143..1347964 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003678DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003840DNA_helicase
IPR010285DNA_helicase_pif1-like
Homology
BLAST of NO06G04690 vs. NCBI_GenBank
Match: OXA61706.1 (Failed axon connections [Folsomia candida])

HSP 1 Score: 198.0 bits (502), Expect = 3.900e-47
Identity = 108/225 (48.00%), Postives = 141/225 (62.67%), Query Frame = 0
Query:   34 VKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQ--DENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLA-TPNVVSKQVFM 256
            V+    RAIL P N DVD S+D  +    G+ KTY+S D L    D +   YP E LNS NP G  PH+L+LKVG  IILLRN +  +GL NGTRL+++ L   +I AK+LTG   G +V++PRI + TN D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYLP+PVF+HGQLYVA SR+    ++ + V      G+      +  TPNVV K + M
Sbjct: 1003 VETFSSRAILCPTNADVDKSNDQVLDILIGDNKTYISTDSLMTDVDSDRDDYPVEFLNSLNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTRLVVVELKTNLILAKVLTGSSEGNIVFIPRIDLTTNSD---LPFTLKRRQFPVKRAFAMTINKSQGQTLDKVGIYLPNPVFSHGQLYVAFSRVRRSCDVKVYVVDTIEQGKLIQGSNVVFTPNVVYKAILM 1224          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021953640.1 (uncharacterized protein LOC110850511 [Folsomia candida])

HSP 1 Score: 192.6 bits (488), Expect = 1.600e-45
Identity = 104/224 (46.43%), Postives = 142/224 (63.39%), Query Frame = 0
Query:    9 PELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDENEGA--YPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTH 231
            PE       ++  ++GD     N  V+   +RAIL P N +VD  ++  +Q   GE KTYLS D +  DE+     YP E LN+ NP G +PH+L+LKVG  I+LLRN +  +GL NGTRL++  L P +I AK+LTG   G +V++PRI + T+ D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYL SPVF HGQLYVA SR+    ++ + VT+
Sbjct: 1248 PESMLASENIVKDIFGDCLTPEN--VEQFCNRAILCPTNAEVDKINNQVLQILQGECKTYLSTDSIVTDEDSSRDDYPVEFLNTLNPSGSSPHELKLKVGALIMLLRNLNTKRGLCNGTRLVVTELKPNLIIAKVLTGSAEGNLVFIPRIDLITDSD---LPFHLKRRQFPVKLAFAMTINKSQGQTLDKVGIYLASPVFGHGQLYVAFSRVRRSIDVRVHVTN 1466          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021995583.1 (uncharacterized protein LOC110892742 [Helianthus annuus])

HSP 1 Score: 191.0 bits (484), Expect = 4.700e-45
Identity = 98/219 (44.75%), Postives = 139/219 (63.47%), Query Frame = 0
Query:   17 RLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRL-----AQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIH-MHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVT 230
            +L+  +Y D +   N T  NL +RAI+ PKN   D  ++  +   PGE  TYLS D +     +Q + +  YP E LN  N  G   H L+LK+  P+IL+RN D   GL NGTRLL+  L PR+IEA+I+TG  +G  VY+PRI+ +H  +D   +PF+  R Q+P++  +AMTINK Q QS  K+A+YLP P+F+HGQLYVALSR   P+ + +++T
Sbjct: 1238 QLIKFIYDD-DILHNPTASNLSERAIVCPKNETADEINELVLASSPGECSTYLSVDSITPHSHSQGDTDLMYPPEYLNLLNFQGIPSHCLKLKINTPVILMRNIDQKSGLCNGTRLLVSQLLPRIIEARIITGTAIGHRVYIPRINFVHKTND---LPFVFTRRQFPIKTCYAMTINKSQGQSLNKIAVYLPEPIFSHGQLYVALSRATSPSGLKVLIT 1452          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_020081827.1 (uncharacterized protein LOC109705509 [Ananas comosus])

HSP 1 Score: 190.7 bits (483), Expect = 6.200e-45
Identity = 101/216 (46.76%), Postives = 139/216 (64.35%), Query Frame = 0
Query:   18 LLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQ-----DENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMV 229
            ++  +YGD  +  N  V  L DRAI+ P N   D  + + +   P E+K YLS+D L +     ++N+  YP + LNS    G   H+L+LK+G PI+LLRN +   GL NGTRL+I  L+ RVIEA+I TG HVG+ VY+PRI M+   +TK  PF L+R Q+PVR  +AMTINK Q Q+ QKV +YLP PVF+HGQLYV +SR+     I +++
Sbjct:  661 IISAIYGDIQENYN-KVSYLRDRAIITPMNETTDEINKYVLSLLPNEEKVYLSSDSLCKSSRNAEDNDVLYPVDFLNSLKFNGVPNHELKLKIGAPIMLLRNINQSAGLCNGTRLVITQLASRVIEAQIFTGNHVGEKVYIPRIVMNVT-ETKW-PFTLKRRQFPVRLCYAMTINKSQEQTLQKVGLYLPRPVFSHGQLYVGVSRVTSRDGIRILI 873          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_010436751.1 (PREDICTED: ATP-dependent DNA helicase PIF1-like [Camelina sativa])

HSP 1 Score: 189.9 bits (481), Expect = 1.100e-44
Identity = 108/229 (47.16%), Postives = 141/229 (61.57%), Query Frame = 0
Query:   32 TTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLA------QDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVF 255
            T  + L +RAIL PKN  VD  +   +   PGE K Y S+D +A      +DEN G YP E LNS    G   H L LKVG P++LLRN +  +GL NGTR+++  L  RVIEA++LTG HVG+ V +PRI +   D     PF LRR Q+P+R  +AMTINK Q QS +KVA+YLP+PVF+HGQLYVA SR+     +  ++   PLH +P         NVV K++F
Sbjct:  361 TKQEYLTERAILTPKNDAVDEVNQFLLDQIPGEVKEYYSSDSVAIGDSNMEDEN-GIYPPEYLNSLKFSGLPNHVLSLKVGAPVMLLRNLNQKEGLCNGTRMVVTRLGERVIEAELLTGTHVGKTVIIPRIILSPTDTI--YPFTLRRRQFPIRLCYAMTINKSQGQSLKKVALYLPNPVFSHGQLYVAFSRVTSAQGL-KVINMKPLHAKP------TVSNVVYKEIF 579          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_018461035.1 (PREDICTED: uncharacterized protein LOC108832040 [Raphanus sativus])

HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44
Identity = 103/247 (41.70%), Postives = 157/247 (63.56%), Query Frame = 0
Query:   14 DPIR-LLDHVYGD-FNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRL----AQDENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVF 255
            DPI  ++  VYG+ F D+++       +RAIL P N DVD  +++ +    GE+K YLS+D +     + ++E  +  ELLNS    G   H +RL++G P++L+RN DP +GL NGTRL I+ ++P ++EAK++TG  +G+ V+L R+ + T  D+K +PF +RR Q+P + AFAMTINK Q Q+  KV +YLP PVF+HGQLYVA+SR+     + +++T+          P  +T NVV K +F
Sbjct: 1263 DPIECIVSEVYGNTFKDSKDPLF--FQERAILCPTNEDVDMINNYMLDHLTGEEKVYLSSDSIDPADTKSKDESIFTPELLNSIKASGLPNHSIRLRIGTPVMLIRNIDPNEGLCNGTRLQIMQMAPHIVEAKVITGTRIGEKVFLHRM-LITPTDSK-IPFKMRRRQFPFKVAFAMTINKSQGQTLAKVGLYLPRPVFSHGQLYVAVSRVKSRKGLKILITN------KEGKPETSTMNVVYKDIF 1499          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021958925.1 (uncharacterized protein LOC110854787 [Folsomia candida])

HSP 1 Score: 189.1 bits (479), Expect = 1.800e-44
Identity = 110/248 (44.35%), Postives = 149/248 (60.08%), Query Frame = 0
Query:    9 PELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDE--NEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQ-PPPAPTLATPNVVSKQV 254
            PE       ++  ++G+     N  V+    RAIL P N +VD  ++  ++   GE KTY+S+D L  DE  +   YP E LNS  P G APH+L LK G  I+LLRN +  +GL NGTRL I+ L P +I AK+LTG   G VV++PRI + T+ D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYLP+PVF HGQ YVA SR+    ++ + V     HG+  P +  + T NVV K +
Sbjct:  239 PESMLTSENIIKDIFGETLTPDN--VEQFSQRAILCPTNDEVDNINEKILEILEGEAKTYISSDSLVTDEDSDRNDYPVEFLNSLKPSGSAPHELNLKKGALIMLLRNLNTKRGLCNGTRLKIIDLKPNLIIAKVLTGSAEGNVVFIPRIDLITDSD---LPFQLKRRQFPVKLAFAMTINKSQGQTMDKVGIYLPTPVFGHGQFYVAFSRVRRSCDVKVHVVTTLEHGKLLPDSNKIFTRNVVYKDI 481          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021959697.1 (uncharacterized protein LOC110855596 [Folsomia candida])

HSP 1 Score: 188.7 bits (478), Expect = 2.300e-44
Identity = 105/231 (45.45%), Postives = 141/231 (61.04%), Query Frame = 0
Query:    9 PELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDE--NEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQP 238
            PE       ++  ++G+     N  V+    RAIL P N +VD  ++  ++   GE KTY+S+D L  DE  +   YP E LNS  P G APH+L LK G  I+LLRN +  +GL NGTRL I+ L P +I AK+LTG   G VV++PRI + T+ D   +PF L+R Q+PV+ AFAMTINK Q Q+  KV IYLP+PVF HGQLYVA SR+    ++  + T  P+   P
Sbjct:  368 PESMLTSENIIKDIFGETLTPDN--VEQFSQRAILCPTNDEVDNINEKILEILEGEAKTYISSDSLVTDEDSDRNDYPVEFLNSLKPSGSAPHELNLKKGALIMLLRNLNTKRGLCNGTRLKIIDLKPNLIIAKVLTGSAEGNVVFIPRIDLITDSD---LPFQLKRRQFPVKLAFAMTINKSQGQTMDKVGIYLPTPVFGHGQLYVAFSRVRRSCDVKKVATMNPIIALP 593          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021722586.1 (uncharacterized protein LOC110690069 [Chenopodium quinoa])

HSP 1 Score: 188.3 bits (477), Expect = 3.100e-44
Identity = 108/247 (43.72%), Postives = 144/247 (58.30%), Query Frame = 0
Query:   13 YDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQ-----DENEGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVF 255
            +D   +++ +Y +F   RN     L +RAIL P N   D+ +D+ +   P E+KTY S D +       D+   AYPTE LNS   PG   H+L+LK G+P++LLRN +P QGL NGTRL+I HL   VIE KI+TG   G  V +PRI M        +PFIL+R QYP++P +AMTINK Q QS   V +YLP+PVF+HGQLYVA SR   P  +   +               +T N+V K+VF
Sbjct:  136 FDLKMVVETIYQNFEQRRN-DANYLRERAILTPLNDTTDSINDYMMGLLPIEEKTYKSCDEICLSSTECDQQFDAYPTEYLNSLKLPGLPHHELKLKEGMPVMLLRNINPPQGLCNGTRLIITHLGKFVIEGKIITGSKQGNKVLIPRIVM--TSTYHKLPFILKRKQYPLKPCYAMTINKSQGQSLSYVGVYLPNPVFSHGQLYVAASRTTSPEGLKFFI------DDSLQKYKRSTKNIVYKEVF 373          
BLAST of NO06G04690 vs. NCBI_GenBank
Match: XP_021836944.1 (ATP-dependent DNA helicase PIF1-like [Spinacia oleracea])

HSP 1 Score: 188.3 bits (477), Expect = 3.100e-44
Identity = 106/244 (43.44%), Postives = 151/244 (61.89%), Query Frame = 0
Query:   16 IRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDVDASSDHAVQFFPGEKKTYLSADRLAQDEN-----EGAYPTELLNSKNPPGFAPHQLRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQVVYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIYLPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVSKQVF 255
            + L++ +Y D    R T +  L +RAIL  K   VD  +++ +   PGE+  Y SADR++   N     E  YPTE LN+   PG   H++RLKVG PIILLRN + V+GL NGTRL+I  L   VIEA+++TG +VG+ V +PR+ M  ++ T  +PF ++R Q+PV+  FAMTINK Q Q+F +V +YLP PVF+HGQLYV +SR+   T + + +     HG         T NVV +++F
Sbjct:  421 VALVEEIYPDLLH-RYTDINYLAERAILAHKKECVDEINNYILSMIPGEEGVYKSADRVSPLTNRSSVDEDLYPTEFLNTLQFPGIPNHEIRLKVGCPIILLRNINQVEGLCNGTRLIITRLEAIVIEAQVVTGKNVGRRVSIPRVEMTPSNHT--LPFTMKRRQFPVKVCFAMTINKSQGQTFNRVGVYLPEPVFSHGQLYVVVSRVTCRTGLKICIGR---HGN-DTEDCSETKNVVYREIF 657          
The following BLAST results are available for this feature:
BLAST of NO06G04690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OXA61706.13.900e-4748.00Failed axon connections [Folsomia candida][more]
XP_021953640.11.600e-4546.43uncharacterized protein LOC110850511 [Folsomia can... [more]
XP_021995583.14.700e-4544.75uncharacterized protein LOC110892742 [Helianthus a... [more]
XP_020081827.16.200e-4546.76uncharacterized protein LOC109705509 [Ananas comos... [more]
XP_010436751.11.100e-4447.16PREDICTED: ATP-dependent DNA helicase PIF1-like [C... [more]
XP_018461035.11.800e-4441.70PREDICTED: uncharacterized protein LOC108832040 [R... [more]
XP_021958925.11.800e-4444.35uncharacterized protein LOC110854787 [Folsomia can... [more]
XP_021959697.12.300e-4445.45uncharacterized protein LOC110855596 [Folsomia can... [more]
XP_021722586.13.100e-4443.72uncharacterized protein LOC110690069 [Chenopodium ... [more]
XP_021836944.13.100e-4443.44ATP-dependent DNA helicase PIF1-like [Spinacia ole... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04690.1NO06G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04690.1NO06G04690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04690 ID=NO06G04690|Name=NO06G04690|organism=Nannochloropsis oceanica|type=gene|length=822bp
ATGCCCCCTTTCATGCGCCCTCCGCCAGAGCTGAACTACGACCCCATTCG
GCTCCTCGACCACGTCTACGGGGACTTCAATGATGCGCGCAATACAACGG
TAAAAAATCTCATTGATCGCGCCATCCTCATCCCCAAGAACAGGGACGTT
GACGCCTCGAGCGACCACGCCGTCCAGTTTTTCCCCGGAGAAAAAAAGAC
TTATCTCTCAGCAGACAGGCTAGCGCAGGACGAGAACGAGGGTGCTTACC
CCACGGAGCTCTTAAACTCCAAGAACCCGCCCGGCTTCGCCCCGCATCAA
CTACGGCTAAAAGTGGGCATACCTATCATCCTGTTGCGGAACGCAGACCC
GGTTCAAGGCCTTGCCAATGGGACACGTTTGCTCATCCTGCATCTTTCTC
CTCGCGTCATCGAGGCCAAAATTCTGACGGGGATCCACGTGGGTCAAGTT
GTCTACCTTCCCAGGATCCACATGCACACCAACGACGACACCAAGGGCGT
ACCTTTCATCCTCCGCCGAGGTCAGTACCCGGTCCGGCCTGCCTTCGCCA
TGACCATAAACAAATTCCAGAGACAGTCCTTCCAAAAGGTCGCAATCTAC
TTGCCGTCCCCAGTATTTGCCCACGGTCAGCTCTATGTCGCGCTTTCGAG
AATAGGAGACCCCACCAACATCACCATGATGGTCACCCACCCTCCTCTCC
ACGGCCAGCCCCCTCCCGCTCCCACACTTGCCACACCAAATGTAGTCTCT
AAGCAAGTGTTCATGTACATGAAACCGCCACAGTCACTACCACAGCAACC
GGAAGACATGATGGAAGTATAG
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protein sequence of NO06G04690.1

>NO06G04690.1-protein ID=NO06G04690.1-protein|Name=NO06G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPPFMRPPPELNYDPIRLLDHVYGDFNDARNTTVKNLIDRAILIPKNRDV
DASSDHAVQFFPGEKKTYLSADRLAQDENEGAYPTELLNSKNPPGFAPHQ
LRLKVGIPIILLRNADPVQGLANGTRLLILHLSPRVIEAKILTGIHVGQV
VYLPRIHMHTNDDTKGVPFILRRGQYPVRPAFAMTINKFQRQSFQKVAIY
LPSPVFAHGQLYVALSRIGDPTNITMMVTHPPLHGQPPPAPTLATPNVVS
KQVFMYMKPPQSLPQQPEDMMEV*
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Synonyms
Publications