NO06G04550, NO06G04550 (gene) Nannochloropsis oceanica

Overview
NameNO06G04550
Unique NameNO06G04550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4679
Alignment locationchr6:1299336..1304014 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1299336..1304014 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO06G04550 vs. NCBI_GenBank
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 6.400e-23
Identity = 83/284 (29.23%), Postives = 129/284 (45.42%), Query Frame = 0 
Query:  274 FATPSILPHPTNPDEDHLIIARLINYRIDSVGRYYKDYLPKDDKSGILRSACVLYTGRGADRGDVVRIMDGRFERVSYRFLGTEDPRL-----FQLESGEIRVFWTSWEFSKYLGEGSRIISGVLHVNTSTIYVDHLFQSPFNRFLEKNWVVFQVPGGPLRIIYEWHP-LRIGTFNHSVDIDKIQLDLTIDTPLVFKHARGSTNGCFHKGELWFLIHGTTWHKGPGPIYYHRIAVLDGTTLDLKRYTYPFKLESQYGPVEFSLGMTIDAKDRLSIAYSVFDSSS 552
            F+TP+ L        D  ++ R +NY     G Y+        K+ +L      Y           RI +  +        G ED R      ++  S  I     S E+S+     ++++ GV+  +T T+ +  + + PF    EKNWV      G   ++YEW+P +RIG  +   D  +  +D +I +PL F + RGSTNG  H+ E WF+ H      G   IY HRI +L+     + RY+ PF   S+   +E+ LG+  D  + L+  YSV D SS
Sbjct:  264 FSTPTFL--------DSHVLLREVNYFAAEDGSYHVSQ-DSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQLL-GVIEPDTWTLTIQDIIRGPFGDRTEKNWVFV---NGIESLVYEWYPFIRIGHIDR--DKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNSE-TDIEYCLGLKAD-NEGLTFGYSVRDKSS 530
[Close]
BLAST of NO06G04550 vs. NCBI_GenBank
Match: YP_009174077.1 (putative glycosyl transferase [Yellowstone lake mimivirus] >BAT21964.1 putative glycosyl transferase [Yellowstone lake mimivirus])

HSP 1 Score: 104.0 bits (258), Expect = 1.600e-18
Identity = 77/283 (27.21%), Postives = 139/283 (49.12%), Query Frame = 0 
Query:  287 DEDHLIIARLINYRIDSVGRYY--KDYLPKDDKSGILRSACVLYTGRGADRGDVVRIMDGRFER--VSYRFLGTEDPRLFQ-------------LESGEIRVFWTSWEFSKYLGEGSRIISGVLHVNTSTIYVDHLFQSPFNRF-LEKNWVVFQVPGGPLRIIYEWHPLRIGTFNHSVDIDKIQLDLTIDTPLVFKHARGSTNGCFHKGELWFLIHGTTWHKGPGPIYYHRIAVLDGTTLDLKRYTYPFKLESQYGPVEFSLGMTIDAKDRLSIAYSVFDSSS 552
            D  +++  R++NY ID+ G Y+  + ++   +K  +L S             D   + + +F +  V  R++G ED R+FQ              E  EI    T +  +  +G    I+ G   +++  I   +   + F     EKNW VF        IIY+WHPL++   +   ++  I+L   I+ P  F  +RGST G  ++ E+WF++H  ++ +     YYH + VLD   + LKRY+ PFK + +   +E+ +G+ ++ +DR+ + YS +D ++
Sbjct:  397 DNQYVMNVRMVNYLIDNNGNYHDCEKHIITINKYVVLDS-------------DFTIVKEQQFNQDYVDRRYIGIEDLRIFQNSLDNVLDNNGLDNEKREINYIGTGYHQNNKIG----IVYGKYDLDSEEITDINEINTAFTTSNCEKNW-VFTEYNNETHIIYKWHPLQLCKLDKKDNL--IRLVKEIEMPAFFSLSRGSTCGSKYEDEIWFVVHIVSYEEPRH--YYHCLVVLD-NNMKLKRYSAPFKFKGE--TIEYCIGLLVE-EDRVIMTYSCWDRTT 653
[Close]
BLAST of NO06G04550 vs. NCBI_GenBank
Match: EWM20170.1 (hypothetical protein Naga_101281g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 6.400e-15
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 0 
Query:  407 QSPFNRFLEKNWVVFQVPGGPLRIIYEWHP-LRIGTFNHSVDIDKIQLDLTIDTPLVFKHARGSTNGCFHKGELWFLIHGTTWHKGPGPIYYHRIAVLDGTTLDLKRYTYPFKLESQYGPVEFSLGMTIDAKDRLSIAYSVFDSSS 552
            + PF     KNWV      G   ++YEW+P +RIG  +   D  +  +D +I +PL F + RGSTNG  H+ E WF+ H      G   IY +R+ +L+     + RY+ PF   S+   +E+ LG+  D  + L+  YSV D SS
Sbjct:    2 RGPFGDRTGKNWVFV---NGIESLVYEWYPFIRIGHIDR--DKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTNRMVILNFEMSQILRYSLPFTFNSE-TDIEYCLGLKAD-NEGLTFGYSVRDKSS 140
The following BLAST results are available for this feature:
BLAST of NO06G04550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20240.16.400e-2329.23hypothetical protein Naga_100380g2 [Nannochloropsi... [more]
YP_009174077.11.600e-1827.21putative glycosyl transferase [Yellowstone lake mi... [more]
EWM20170.16.400e-1535.62hypothetical protein Naga_101281g2, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04550.1NO06G04550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|256511gene_9633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04550.1NO06G04550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04550 ID=NO06G04550|Name=NO06G04550|organism=Nannochloropsis oceanica|type=gene|length=4679bp
TAGCACTCCGAGTCCTGAAAAACAATTTCCGAGCGCGAAAACTTGGCAAG
CAATTATGGGGGCATTCTTCTTTGAAGTTTGTCGAGCGAGGCGACGACTT
TGCTCTCTGGTCGAGCACTGTGCGGTGTCTGCCCTCACAAAGAGGGCAAC
AAGGGACAGTAGATGCGAGTGGTACATTGTTCTCTCCTTGAACCCACGAC
TGCATTCTAGACAATCACAGTGCAACGAGCACACACAGGCATCGTCGTCA
TCCATGAGCGGGACATAATGAGGGGTGATCGTCCCTCGTAAACATCAAAA
ACAGGTCTGACACCGATAGCAACATCCACCCAGAAGCCAGTTGGGTCGGT
CGAGGAGGCGTGAGGTTGAGGGAGCGCATCGCTTTCGAGATGATTTACTT
TGCTCTTGAAGCCTCGTGGGTCTCGGGCGGGCTTATTTTATTGCTCATAA
TATGATAAAGTAGAGGCCACCATGGCGGTGGCTTTGTCCGTGATGGCGAT
TAGTACCCCAGAAAATAAAAAATAAAATAAAAACTTTGGTCCGTAGGTAA
TTGCCATGCATGCTGAATGACTGGCTAAGCATCTCACTTCCCCCCACGTC
ACTAATGATAATAATATTATTAATATAATAATGTAATCGGCAGAAGAAAC
GTGGTTTCCGCGATGGACGCTGGGTAATTGAGATGGAATGACCATATCCA
TGATGACTCGGTGCTCTCTCCGATCATCCCGGCCCCCACCTCTACACCCA
TTTACACACTCTTAATGGCTACTACTTGAACTCAAAAAACAGATGATTAA
GATCAATTCGATGGATAATGAAAGCGAAGGGTTAGGTGTTCATTTATATA
TTTCGTCATCGAAAGCATTTTGTTTACTTTGGTCACTTATTATGGCTATC
ACTTTGCTCCTTTTAATCATGCCGTCGGGGCAAGTCTCCCGCGAAGCTTT
GTCTGATCAAAAAGAAATGAACAATACTTGTCAAGACGTAATCGCCAAGC
TATACACAAACGCCTCGGTGCTGGCGATTCCTCTTTTAAGTCCATCTTGT
ACGGCCCCGGAACTCGGCTACTTGCTCTACCAGCGTGAGGACTACGTCCA
TGCCGCGCGTCTTTACGAGGAAATGCTGGGCAACGGGATACCAAATACAT
ATGTTGAGATTGCTGCTTATCGGTGGCTTTCGGGTTGTTACGAACATCTC
GGTCTCTCGGAGTCCGCAGAATTTTATGCGCGCAGAGCTTTGGAAATCGG
AGGTGAGGTTATGCCCGCACTGAATATAGCAACGCGCTTGGAGGAAAAGG
GAGAGATTGATGAAGCGGCCGGTCAGTTCAGGCTCGCTTGCACTTTGTAT
CTGGCATCACAACCGCTTCCCAAGGATGGCCGAGAGCAGCTTGAATCCGG
TGACCAACGCGTGCTGTGGCCACATACCTTTTCGACGGGATATCTGAAGA
AGCTGCAGACACTTGATGCCATCGGGAATGATCACGAAATCACCGATGAA
ACACGGGCTCAGGTCCATTGGGAGTTGATTTCTCTAACGCGGCCTCTATT
GAATTGTGGTGAGGAGCTCTTTCGCCGCGGAGGCAATTACGGTAACGGAC
AGGACTATTATTTTGCGACGCCTTCGATCCTGCCGCACCCGACCAACCCG
GATGAGGACCACCTTATTATCGCGCGACTTATAAATTATCGCATCGACTC
CGTAGGACGTTATTACAAGGATTATCTACCAAAAGATGATAAGAGCGGTA
TCCTGCGTAGCGCGTGTGTGCTTTATACCGGTCGTGGTGCAGATCGTGGC
GACGTGGTGCGCATCATGGACGGGCGATTTGAAAGGGTATCATATCGTTT
CCTAGGCACCGAGGATCCTCGGCTATTTCAATTGGAATCAGGGGAGATTC
GCGTTTTTTGGACTAGCTGGGAATTTTCCAAGTACCTTGGTGAAGGGTCA
AGGATAATAAGCGGAGTCCTACACGTCAATACTTCTACCATTTATGTGGA
CCACCTCTTCCAAAGCCCCTTTAATCGATTCTTAGAGAAGAATTGGGTTG
TTTTCCAAGTCCCCGGGGGGCCGCTAAGGATTATTTATGAGTGGCATCCC
CTCCGGATAGGCACATTTAATCACAGTGTTGATATCGACAAAATACAGCT
GGATTTAACGATTGATACGCCACTGGTTTTCAAGCACGCCCGCGGATCGA
CGAATGGATGTTTTCACAAGGGCGAGCTTTGGTTCCTTATCCACGGTACT
ACGTGGCATAAGGGACCAGGGCCAATCTACTACCATCGAATAGCTGTGTT
AGACGGAACCACCTTGGATTTGAAGCGGTACACATACCCCTTTAAGCTTG
AATCACAGTATGGGCCTGTTGAATTCTCTCTGGGGATGACCATAGATGCT
AAAGATCGGCTTTCTATTGCTTATAGTGTGTTTGATTCGTCGTCTGTAAT
TAGGCGGATTCCAATGTGGAAAGTTGAAGCGTTGATGAGAAAACACCAAA
ATCGGCTGCCCCTTTTTCGAGAGGATCAGATAGCACGTGATACGAAAAAT
ATCTGAAATTTTTATTCACAATCAGCTCTATATTATGTATGAGATTTATC
AGCGGTGGTCACGTCGCATATGCAATTTCTAGCTTCGAGTGGATTTCCTT
AATCTGTGGATTGAGTTGAGAATAAACTGGATATTTCGGTGGAAAGCCAA
CAAGAGGAGGTCTCCGTGTGAAGCTGACGCCGGCATAGGTGAGAGTAATC
TTACAACTACGGTAGGATCTCCTCCCTTCCAGAGAGAACCCAGCGGATTC
ATTAGGGTCGATCGCCGGCAAGTGCGGTGCTAATATGATGCTGCAGACCA
GTCTTATTCGGTGTCTGTGCGTGGTACACATATGTGTAATGAAAGATAGC
CAGCAACTTGTTTTATTCCGATACTCACTCAAAATTATCCCGGGAAGGAA
GGTACTAGCGGGCGAATCCAGCATATTCATACATTTATTCTTGTAGATGA
GTGGATTCGAAACCCATAGCTAACGGTCACCACATGGTCCTATAAGGGAC
TATTCACCAGCGGCATTTCAAGAAAATTGCCCTCTGCACATTCGTGCAAA
TGCCTCTACATCCCGCACGGTATTCAAGTGAAAGCTGGTGGCATCGTAAA
GCGGGGAAAGATTGTACAGATCGATCTGGAGGCATGTATTCCTGGTATTC
AGGGGATGCGTAACAATCTCGGTTTGGCTTTGGAGCGGGAGCAGGCCGTG
TTGAAATAATGCTCTGTGGACGATTGGGTGCTGAACGTCAGCAACCAAGG
TTGCAGAAAGTTCGCTTAAGCCATTAATGGCGAAGATGGCTGCCAACCGC
GTCGATACCAGGTATTAAATGCCTGACGCTTGGAAGCAGCTGAGACAGAT
GCGTAGTGTGTATTGGTGCGCGTCTGTCGCGGTGAAGTCATGTTGGGTAC
CCTCTTAGCTTTCTTGAGCGACATACGGGCGCCCATAGTCTTGCAAACAA
TTCTTTAACATTGTTGGTCGATTTTAAATCAGCGGGATCAAAAGCCTCCT
CATTCACGACGACACCCCTCGAGTTATACAGCACAGCAGTCCTGCCAAAC
TCGTCCAATTTGCCGCCAGGGTCTTTGAGGTAGCCTTTGACATTCCATTG
GTCCTTGTTAGCCCTGTCCCTGTCGACGACCTTGATTGAGGTGAGGGCCA
ACGTCGGCTGAGCTGCCGTGAGGGCGAAGGTGATAACGATTGCGAGAAGA
GGAAAAGTGCGACGAATAGATTCCCGTAAGGGAGGCTTCTTTACTCTCAT
GGCATGAGGTGTAGGTGGGTGCTTTGACTGATTCTTGGGATGTCTGTCGG
TTAAAGAAAATCTTCAACGTCTTGTGAGTAAGCACAACCGGGGATCAGGA
AGCTTTATGCGGCAGATTCAAAGGCTTATATCATTCCGTGTGTGAGATGT
CTTGCGAGCGGATAGATGTGGTGTGCGTGGGGGCGATAATATGCGTTGTG
CATGCATTCCTGACTTGCACGGGAGGGAGGTGGAGGTGATGAAGATGAGA
AATGAAAAGATGAGACTGGGGAAGGGAGCTCCATTGTTTAATAGTTGCAT
TATGTTTGGTCGAAATATCGTTGTCTAGCTCATATGATCGCAACTCTTCA
GGACTCCCACAAAGAAATACCATAAATTAGCGGAGTAATACCGCCCCGCC
GGGCGAGGAAGGTGGAAGATAGAAGAGGAATGAAAAACAAAATTAAAAGT
AGAACAACGGAGATAAGGGAAAAGAGAAGGGCAGAGAGAAGGATGGGGAA
GAGAAGAGGAGGAGGAGCAATGGAGGGTACTGAACATGTCCGGGCCTCTC
TTTTCATAAAGCCACATAAATGGTGCCCCCACACGTTATGTTGACAAGTA
GAAGACATTGCAACTACCTTAATAAATATATTAACATCTTGTGAGTACCA
AAATAGCCCCCCCCCCCAGGGTCACGGTGCACATACCGGCATCAGGTCAC
TGCCATTTCTGTGGGACGATGACGCCAAGCTGGTACTGATGAGAGAGGCG
GGGAGGTGAAGGAGGTGTAGGAGAGGGAGGCAAAAAAGGTGGAGGAGGTG
AAGGGGGAGGGAGGCAGAGTAGGGGAGGTAGAAGAGGAAGGGGGGAGGAG
GGAGAGGCGAAGGAGGAGAAGGGATCTGG
back to top

protein sequence of NO06G04550.1

>NO06G04550.1-protein ID=NO06G04550.1-protein|Name=NO06G04550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MIKINSMDNESEGLGVHLYISSSKAFCLLWSLIMAITLLLLIMPSGQVSR
EALSDQKEMNNTCQDVIAKLYTNASVLAIPLLSPSCTAPELGYLLYQRED
YVHAARLYEEMLGNGIPNTYVEIAAYRWLSGCYEHLGLSESAEFYARRAL
EIGGEVMPALNIATRLEEKGEIDEAAGQFRLACTLYLASQPLPKDGREQL
ESGDQRVLWPHTFSTGYLKKLQTLDAIGNDHEITDETRAQVHWELISLTR
PLLNCGEELFRRGGNYGNGQDYYFATPSILPHPTNPDEDHLIIARLINYR
IDSVGRYYKDYLPKDDKSGILRSACVLYTGRGADRGDVVRIMDGRFERVS
YRFLGTEDPRLFQLESGEIRVFWTSWEFSKYLGEGSRIISGVLHVNTSTI
YVDHLFQSPFNRFLEKNWVVFQVPGGPLRIIYEWHPLRIGTFNHSVDIDK
IQLDLTIDTPLVFKHARGSTNGCFHKGELWFLIHGTTWHKGPGPIYYHRI
AVLDGTTLDLKRYTYPFKLESQYGPVEFSLGMTIDAKDRLSIAYSVFDSS
SVIRRIPMWKVEALMRKHQNRLPLFREDQIARDTKNI*
back to top
Synonyms
Publications