NO06G04200, NO06G04200 (gene) Nannochloropsis oceanica

Overview
NameNO06G04200
Unique NameNO06G04200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr6:1170260..1171799 +

Link to JBrowse

Properties
Property NameValue
DescriptionATP synthase mitochondrial F1 complex assembly factor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1170260..1171799 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0065003protein-containing complex assembly
Vocabulary: INTERPRO
TermDefinition
IPR010591ATP11
Homology
BLAST of NO06G04200 vs. NCBI_GenBank
Match: CCI46249.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 143.3 bits (360), Expect = 1.100e-30
Identity = 64/175 (36.57%), Postives = 114/175 (65.14%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRK 260
            F+YPAPR L +I+K+ L+      +I E+W EYH+E+ D++A  I  ++ +I+ +RA ++R+ + PV+R++G+  ++ QFQD+CFL T LE ++K PS A+P L  ++Y +F ++K + L+RGD+   + ++E E L++ ++  Y+  ELY  +   N   ++F FE Y   + K
Sbjct:   31 FSYPAPRALNEIVKIDLLASENADKITEIWAEYHREKVDSVAKVIAEKKMQIITERASSARLSVIPVYRDNGFFNILCQFQDTCFLLTSLEAYQKAPSSASPCLTFSIYKDFASEKSITLIRGDIVSTVNKKESESLLSSILHLYSAPELYNWVVQLNQASENFDFEAYREALDK 205          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_008876516.1 (hypothetical protein H310_11571 [Aphanomyces invadans] >ETV94925.1 hypothetical protein H310_11571 [Aphanomyces invadans])

HSP 1 Score: 142.5 bits (358), Expect = 1.900e-30
Identity = 70/181 (38.67%), Postives = 110/181 (60.77%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFR------ESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRK 260
            F +P+PR L  ++K+  + K  P  I+ +W EYH  + DAL +++ A Q   L  R K    F++PV+R      E G+ T++SQFQD CFL T L+ +R+NPS A P L +++YD+ ++ K L L+RGDV + L + E   L+T L+  Y   +L+KT+  FN +P  F+F+ Y+   +K
Sbjct:   24 FHFPSPRSLQSLVKLDDLEKETPDAIRRIWGEYHDAKTDALGTSLTATQLDTLTARGKKCAFFVFPVYRTNAETKEEGFFTMLSQFQDKCFLLTTLDAYRENPSQAPPCLTVSIYDDLVSSKELALVRGDVANVLDKPEASELLTALLARYVDDDLFKTVEAFNLKPHDFNFDAYLAECKK 204          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: CCA18012.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 142.1 bits (357), Expect = 2.500e-30
Identity = 61/175 (34.86%), Postives = 116/175 (66.29%), Query Frame = 0
Query:   85 FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVRGVRK 260
            F+YPAPR L +I+K+ L+      +I ++W EYH+++ D+LA  IP ++ +++ DRA ++R+ + PV+RE G++ ++ QFQD+CFL T LE ++K P+ A+P +  ++Y++  ++K + L+RGD+   ++++E + L++ ++  Y+  ELY+ +   N   + F FE Y   + K
Sbjct:   31 FSYPAPRALNEIVKIDLLANENADKIAQIWAEYHRDKIDSLAKVIPDKEMQLITDRASSARLSVIPVYREEGFLNMLCQFQDTCFLVTSLEAYQKAPANASPCVTFSIYNDLASEKSITLVRGDIVSTVSKKESKSLLSSILHIYSVPELYERIVQLNQASEKFDFEAYREALDK 205          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_024571741.1 (protein mitochondrial precursor [Plasmopara halstedii] >CEG35372.1 protein mitochondrial precursor [Plasmopara halstedii])

HSP 1 Score: 141.0 bits (354), Expect = 5.600e-30
Identity = 71/184 (38.59%), Postives = 115/184 (62.50%), Query Frame = 0
Query:   70 HAPSSSPFSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKY 254
            HA + + FS  +   F+YP  R L  I+K+ L+      +I+ +W+E+H ++ DA+A T+ A +F+ L  RA A+  F+ PV+R+ GY  ++ QFQ SCFL T+LE F++NP+ A P + ++LY + +  K L LLR DV + L + E + L+ QL+  Y + +LY+ +  FN++P  F FE Y
Sbjct:   18 HARNVANFSVSNG--FSYPGARSLEQIVKLDLLENEHAPKIRSIWEEFHADKDDAVAMTLDAIEFQALVTRATAAPYFVLPVYRQEGYFNMLCQFQQSCFLVTYLEAFKENPAAAPPCIAVSLYIDLLETKKLVLLRADVINMLDKNESQQLLMQLLTSYQNDKLYEHVDKFNNKPDQFDFEAY 199          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: OQS07591.1 (hypothetical protein THRCLA_00413 [Thraustotheca clavata])

HSP 1 Score: 138.7 bits (348), Expect = 2.800e-29
Identity = 68/185 (36.76%), Postives = 111/185 (60.00%), Query Frame = 0
Query:   77 FSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFR------ESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYVR 256
            FS      F++P+PR L  I+K+  + +  P EI ++W +YH ++ D++AS IP   F+ L  RAK    F+ PV+R      E G+ T++SQFQD CFL T L+ +R+NP+ A P L ++L+D+ +  K L L+RGDV + L + E + L   L++ Y   + +  +  FN  P  F+F++Y++
Sbjct:   12 FSTSKGGGFSFPSPRSLQSIVKLDELSQQNPEEITQIWTDYHADQTDSVASIIPKANFETLISRAKECPFFVMPVYRVNQETKEEGFFTMLSQFQDKCFLITTLDAYRENPAQAPPVLTISLFDDLLTTKELALIRGDVANLLDKPEAQVLFHALLKRYIDDKHFDMVHAFNKRPNEFNFDEYLK 196          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: OQR87744.1 (hypothetical protein ACHHYP_08083 [Achlya hypogyna])

HSP 1 Score: 137.1 bits (344), Expect = 8.100e-29
Identity = 65/184 (35.33%), Postives = 113/184 (61.41%), Query Frame = 0
Query:   77 FSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFR------ESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYV 255
            FS      F++P+PR L  I+K+  + +  P +I+ +W E+H ++ D++A+T+   ++++L +RAK    F+ PV+R      E G+ T++SQFQD CFL T L+ +R+NP+ A P L ++++D+ +A K L LLRGDV + L ++E + L   L + Y     +  +  FN  P+ F+F+ Y+
Sbjct:   13 FSTSKGGGFSFPSPRSLQSIVKLETLAQEAPEDIRRIWTEFHADKTDSVAATLAKDEWEVLMERAKDCPFFVLPVYRRNQETNEVGFFTMLSQFQDKCFLVTTLDAYRENPAQAPPCLTVSIFDDLVASKDLALLRGDVANLLDKQEADVLFQALTKRYIDDAHFDMVHAFNKRPQEFNFDAYL 196          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_001459087.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK91690.1 unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 135.6 bits (340), Expect = 2.300e-28
Identity = 63/179 (35.20%), Postives = 115/179 (64.25%), Query Frame = 0
Query:   77 FSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDV-GHHLTREEGEYLITQLVEHYTHAELY-KTLWTFNHEPKSFSFEKY 254
            F  +++  FTYP PRKL +I+K+ L  +    ++  +W EYHKE+++ +A  +   +++ILK   K S +FL P+ R+ G+  LI Q Q +  LFTFLE+++K+ S ++P+  LT+++E +A K + L+RGD+  + + ++E  +L  Q ++ Y   ELY K ++T NH+ + F+++ +
Sbjct:    5 FLNKYQFAFTYPCPRKLREIVKMSLFERESKDQVISLWMEYHKEKQNNVAYVVSKDEYEILKRNTKESPLFLLPIKRKGGHFQLIGQSQTNSILFTFLEEYKKSGSFSSPYFILTIFEELLAQKQVALIRGDIMDYKIDKDEATFLTNQFLKFYMTPELYEKYIYTLNHKQQEFNYDDF 183          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: CBN78230.1 (Protein atp11, mitochondrial precursor [Ectocarpus siliculosus])

HSP 1 Score: 135.2 bits (339), Expect = 3.100e-28
Identity = 77/224 (34.38%), Postives = 131/224 (58.48%), Query Frame = 0
Query:   36 ARKRVSCALASSLPAASAASAAH--LPIHARSFPLVHAPSSSPFSFQHRSV-FTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYT-HAELYKTLWTFNHEPKSFSFEKYVR 256
            A +R +C    +L  + AA+  H  +P  A++        ++  S   R + F++P PRKL DI  +PL+ K E   I ++W  YH ER D+L + IP      L+ +AK   +F+ PV+R+ G+  ++SQ+QD CFL T+LED++ NP GA P+  +++Y++ +  K LGL+R D+  +LT++E + L+  L+  Y+ HA  +  +  FN  P+ F  +K ++
Sbjct:    2 AVRRAAC-YGKTLLWSRAAARPHSVVPAAAKTMAAATGARAARVSQARRELSFSFPGPRKLEDITNLPLLAKEEKESIADIWTAYHDEREDSLGTVIPGDSLDGLQAKAKKCPMFVLPVWRDGGHFMMLSQYQDKCFLLTYLEDYKVNPGGAQPYATISMYNDLVDSKGLGLIRADITPNLTKKEVDRLVRLLIRFYSPHA--HHHVEAFNLRPQEFDLDKLLQ 222          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_008619952.1 (hypothetical protein SDRG_15554 [Saprolegnia diclina VS20] >EQC26614.1 hypothetical protein SDRG_15554 [Saprolegnia diclina VS20])

HSP 1 Score: 134.4 bits (337), Expect = 5.200e-28
Identity = 68/184 (36.96%), Postives = 106/184 (57.61%), Query Frame = 0
Query:   77 FSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFR------ESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYV 255
            FS      F++P+PR L  I+K+  + +  P  I+ +W E+H ++ D++AS +    F++L  RAK    F+ PV+R      E GY T++SQFQD CFL T L+ +R+NPS A P L ++L+D+ +  K L LLRGDV + L + E   L   L + Y     +  +  FN  P+ F+F+ Y+
Sbjct:    9 FSTSKGGGFSFPSPRSLQSIVKLETLSQEAPDAIRRIWTEFHADKSDSVASALSKTDFELLTGRAKDCPFFVLPVYRVNSETNEEGYFTMLSQFQDKCFLITTLDAYRENPSQAPPCLTISLFDDLLTTKELALLRGDVANVLDKPEATTLFEALTKRYIDDAHFDMVHAFNKRPQEFNFDAYL 192          
BLAST of NO06G04200 vs. NCBI_GenBank
Match: XP_012202350.1 (hypothetical protein SPRG_07682 [Saprolegnia parasitica CBS 223.65] >KDO26969.1 hypothetical protein SPRG_07682 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 134.4 bits (337), Expect = 5.200e-28
Identity = 67/184 (36.41%), Postives = 107/184 (58.15%), Query Frame = 0
Query:   77 FSFQHRSVFTYPAPRKLTDIMKVPLVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYPVFR------ESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADKCLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSFEKYV 255
            FS      F++P+PR L  I+K+  + +  P  I+ +W ++H ++ D++AS +    F++L  RAK    F+ PV+R      E G+ T++SQFQD CFL T L+ +R+NPS A P L ++L+D+ +A K L LLRGDV + L + E   L   L + Y     +  +  FN  P+ F+F+ Y+
Sbjct:    9 FSTSKGGGFSFPSPRSLQSIVKLETLSEEAPDAIRRIWTDFHADKSDSVASALSKTDFELLTSRAKDCPFFVLPVYRVNSETNEEGFFTMLSQFQDKCFLITTLDAYRENPSQAPPCLTISLFDDLLATKDLALLRGDVANVLDKPEATTLFEALTKRYVDDAHFDMVHAFNKRPQEFNFDAYL 192          
The following BLAST results are available for this feature:
BLAST of NO06G04200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCI46249.11.100e-3036.57unnamed protein product [Albugo candida][more]
XP_008876516.11.900e-3038.67hypothetical protein H310_11571 [Aphanomyces invad... [more]
CCA18012.12.500e-3034.86conserved hypothetical protein [Albugo laibachii N... [more]
XP_024571741.15.600e-3038.59protein mitochondrial precursor [Plasmopara halste... [more]
OQS07591.12.800e-2936.76hypothetical protein THRCLA_00413 [Thraustotheca c... [more]
OQR87744.18.100e-2935.33hypothetical protein ACHHYP_08083 [Achlya hypogyna... [more]
XP_001459087.12.300e-2835.20hypothetical protein [Paramecium tetraurelia strai... [more]
CBN78230.13.100e-2834.38Protein atp11, mitochondrial precursor [Ectocarpus... [more]
XP_008619952.15.200e-2836.96hypothetical protein SDRG_15554 [Saprolegnia dicli... [more]
XP_012202350.15.200e-2836.41hypothetical protein SPRG_07682 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000054NSK000054Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04200.1NO06G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605066gene_9593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04200.1NO06G04200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04200 ID=NO06G04200|Name=NO06G04200|organism=Nannochloropsis oceanica|type=gene|length=1540bp
ATGCACAACTCCCCACTCACACAGGCGCCGGAAGGAAAGCAACGACACGA
CCGGATGACGACGGCCTCGGTCTTGCTCCGTCGAGGGGCCATCGCCTTTC
CTGCCGCCCGCAAACGTGTTTCCTGCGCTTTAGCCTCCTCTCTCCCAGCA
GCATCGGCAGCATCAGCAGCGCACCTCCCCATCCACGCCCGCTCTTTTCC
CCTCGTCCATGCTCCCTCCTCCTCTCCATTCTCCTTTCAGCATCGATCGG
TCTTCACCTATCCCGCGCCGCGGAAGCTGACCGATATCATGAAAGTGCCT
CTAGTCCGGAAGTGCGAGCCGGTGGAGATCAAGgtaaggagggaggaggg
gggcgcgtaggagtgaagggtggaagaaagggacgaacttctgaagagca
cgaatctattctccttcattctgccccctgagttattcgtcctccgtgct
catcgcccttccgccctccttccttccctccttccctcccctccttccct
cccctccttcccttttcatccactccgtagGAAATGTGGCAGGAATACCA
CAAGGAGCGAAGAGATGCGTTGGCAAGTACCATTCCCGCGCAGCAATTTA
AGATCCTGAAGGACCGAGCCAAGGCCAGgtgtgtgtgaatggaggaaggg
agggggggggaacggaggcgaagcttcaggaacaaccgtcggtttaaatt
cacgtttttctgtgtcgatttccctgggcaagttgccacgagaacgttat
caaatgacgtttactcacaccccctctgctttgatgtcacgtctgcgaca
ctcgaccgttcacaccacacgtccctccctccctccctctccctccctcc
agCCGGGTTTTCCTCTACCCCGTATTCCGGGAGTCAGGCTACATGACCCT
CATCTCTCAGTTCCAAGATTCATGCTTCCTCTTCACCTTCTTAGgtcatt
tgaaaatagggagggagggaggatgggagggcgggaggggaaaggggggc
agtcgtagactttccagagttccacacaattctcacacttccctctcccc
ttccctccttccctcccttccttccttagAGGACTTCCGTAAGAATCCAA
GCGGCGCGACGCCCTGGCTGTGCCTGACTCTGTACGACGAGTTCATGGCC
GACAAGTGCCTGGGATTACTGCGAGGCGACGTGGGTCACCACCTCACACG
GGAGgtagggaaagaggaagggagggagggaaggagggttgcgacatgat
gaggtgttttagttgtttacctgtttacctgtggtacgacgtaggaagtc
tttttctcaatcgccccgccctccttcccccccgcacccccgccctccct
ccctcctttcttgccccagGAGGGAGAGTACCTCATCACACAGCTGGTGG
AGCACTACACACACGCGGAGCTTTATAAGACCTTGTGGACCTTCAACCAC
GAGCCCAAAAGTTTCTCGTTCGAGAAGTATGTCCGCGGTGTCCGCAAGCC
CGACCCGCCCAAGAAGGCTCCGTCGCCCATCATCACCTGA
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protein sequence of NO06G04200.1

>NO06G04200.1-protein ID=NO06G04200.1-protein|Name=NO06G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MHNSPLTQAPEGKQRHDRMTTASVLLRRGAIAFPAARKRVSCALASSLPA
ASAASAAHLPIHARSFPLVHAPSSSPFSFQHRSVFTYPAPRKLTDIMKVP
LVRKCEPVEIKEMWQEYHKERRDALASTIPAQQFKILKDRAKASRVFLYP
VFRESGYMTLISQFQDSCFLFTFLEDFRKNPSGATPWLCLTLYDEFMADK
CLGLLRGDVGHHLTREEGEYLITQLVEHYTHAELYKTLWTFNHEPKSFSF
EKYVRGVRKPDPPKKAPSPIIT*
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Synonyms
Publications