NO06G04130, NO06G04130 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04130
Unique Name	NO06G04130
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1038
Alignment location	chr6:1156424..1157461 +

Link to JBrowse

Properties


Property Name	Value
Description	Testis 14

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1156424..1157461 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036873	Rhodanese-like_dom_sf
IPR001763	Rhodanese-like_dom

Homology

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: ETP55062.1 (hypothetical protein F442_00349 [Phytophthora parasitica P10297])

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    CGP +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYGNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCGPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 219

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_009822429.1 (hypothetical protein H257_01094 [Aphanomyces astaci] >ETV87566.1 hypothetical protein H257_01094 [Aphanomyces astaci])

HSP 1 Score: 115.9 bits (289), Expect = 2.400e-22
Identity = 65/203 (32.02%), Postives = 112/203 (55.17%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDE-----------------------MRTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SK+++G T+NKV++++  ++++RR ETF RV P  L  L  EY+D                        M  Q + +  E  GP VV++ + +   Y+ P+L+LD R   + T     I  ++ FP A L +D++ PE+ ++KN E  L++LY  DE+  L+   A  L ++G++N++VL+GG   +A + P +VEG
Sbjct:   27 KYKDTQSKLDTGSTVNKVRLISSKEFLKRRDETFRRVTPRCLAELFAEYEDTGKGDAAAPEMVARMVKNADGEFVMERQVSDDNQEHAGPRVVSYDAEEGENYDVPYLILDTRPREDFTENR--IHRSKSFPTAFLCRDQFLPEMHQFKNHESKLIVLYCLDEK--LSIQSANLLGQKGFDNIYVLSGGLMEYAALYPHHVEG 225

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_008861479.1 (hypothetical protein H310_00454 [Aphanomyces invadans] >ETW10068.1 hypothetical protein H310_00454 [Aphanomyces invadans])

HSP 1 Score: 115.2 bits (287), Expect = 4.200e-22
Identity = 63/203 (31.03%), Postives = 112/203 (55.17%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDE-----------------------MRTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +S++++G T+NKV++++  ++++RR ETF RV P  L  L  EY+D                        M  Q + +  E  GP +V++ + +   Y+ P+L+LD R   +       I  ++ FP A L +D++ PE+ ++KN E  L++LY  DE+  L+   A  L ++G++N++VLTGG   +A + P++VEG
Sbjct:   27 KYKDTQSRLDTGSTVNKVRLISSKEFLKRRDETFRRVTPRCLAELFSEYEDTGKGDAAAPELVARMVKNADGEYVMERQVSDDNQEHAGPRIVSYDAEEGENYDVPYLILDTRPREDFAQNR--IHRSKSFPTAFLCRDQFLPEMHQFKNQESKLIVLYCMDEK--LSIQSANLLGQKGFDNIYVLTGGLCEYAALFPEHVEG 225

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: ETO86067.1 (hypothetical protein F444_00357 [Phytophthora parasitica P1976])

HSP 1 Score: 114.8 bits (286), Expect = 5.400e-22
Identity = 65/202 (32.18%), Postives = 115/202 (56.93%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    C P +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYGNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCSPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 219

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_012198044.1 (hypothetical protein SPRG_04064 [Saprolegnia parasitica CBS 223.65] >KDO31449.1 hypothetical protein SPRG_04064 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 114.0 bits (284), Expect = 9.300e-22
Identity = 63/205 (30.73%), Postives = 112/205 (54.63%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDAL-------------------------EEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SK+N+G T+N V++++  ++++RR E+F R+ P  L  L  EY+D  +  D+                           +A+  GP VV++ + +   YE P+L+LD R   E       I   + FP A L +D++ PE+ ++KN E  L+I+Y  DE+  L+   AT L ++G++N+++LTGG + +A   P+++EG
Sbjct:   27 KYKDTQSKLNTGNTVNNVRLISSKEFLKRRDESFRRITPKCLAELFNEYEDVGKGCDSASPEMVARMVKNAKGEYVMERHAADDNQAQSGGPRVVSYDAEEREEYEAPYLILDTRPREEFVENR--IHRAKSFPTAFLCRDQFLPEMHQFKNQESKLIIVYCLDEK--LSVQAATLLGQKGFDNIYLLTGGLSEYAAANPEHIEG 227

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_008618744.1 (hypothetical protein SDRG_14398 [Saprolegnia diclina VS20] >EQC27814.1 hypothetical protein SDRG_14398 [Saprolegnia diclina VS20])

HSP 1 Score: 113.6 bits (283), Expect = 1.200e-21
Identity = 63/205 (30.73%), Postives = 112/205 (54.63%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDAL-------------------------EEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SK+N+G T+N V++++  ++++RR E+F R+ P  L  L  EY+D  +  D+                           +A+  GP VV++ + +   YE P+L+LD R   E       I   + FP A L +D++ PE+ ++KN E  L+I+Y  DE+  L+   AT L ++G++N+++LTGG + +A   P+++EG
Sbjct:   27 KYKDTQSKLNTGNTVNNVRLISSKEFLKRRDESFRRITPKCLADLFNEYEDVGKGCDSASPEMVARMVKNAKGEYVMERHAADDNQAQSGGPRVVSYDAEEREEYEAPYLILDTRPREEFVENR--IHRAKSFPTAFLCRDQFLPEMHQFKNQESKLIIVYCLDEK--LSVQAATLLGQKGFDNIYLLTGGLSEYAAANPEHIEG 227

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_024572279.1 (rhodanese domain containing protein [Plasmopara halstedii] >CEG35910.1 rhodanese domain containing protein [Plasmopara halstedii])

HSP 1 Score: 111.7 bits (278), Expect = 4.600e-21
Identity = 64/198 (32.32%), Postives = 111/198 (56.06%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEV 237
            +Y + +SKI+SG T+NKV++++  ++++RR ETF R+    L  L  EY+D      +  + E    +V      ++  YE P+L+LD R + E       I  ++ +P ++L++D   PE+ ++KN E  L++LYD D+     A  A  LV+RG++NV+VLTGG   +A+  P ++EG     + ++  K     V
Sbjct:   22 KYKNTQSKIDSGSTVNKVRLLSHKEFLKRRDETFRRITCSCLAELFNEYED----TGSASQPEMVAQMVENADEKEE--YEAPYLVLDTRSKEEFANNR--IYRSKSYPASYLNRDVLLPEMHQFKNQEAKLIVLYDLDD--STVAQTAHTLVQRGFDNVYVLTGGLINYADEFPDHIEGTPLPPKPVDPSKVSKRSV 209

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: OQS04849.1 (sporangia induced hypothetical protein [Thraustotheca clavata])

HSP 1 Score: 110.9 bits (276), Expect = 7.900e-21
Identity = 63/204 (30.88%), Postives = 113/204 (55.39%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDA---------LEEAEG---------------CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SK+N+G T+N V++++  ++++RR ETF R+ P  L  L  EY+D  +  DA         ++  +G                GP +V++ + +   Y+ P+L+LD R   +       I   + FP A+L +D++ PE+  +KN E  L+ILY  DE+  L+   AT L ++G++NV++L+GG + +A + P ++EG
Sbjct:   27 KYKDTQSKLNTGNTVNNVRLISSKEFLKRRDETFRRITPKCLAELFGEYEDTGKGCDASSPEMVARMVKNDKGDYIMERHMADNNQNQSGPRIVSYEAEEAEQYDAPYLILDTRPREDFVENR--IHRAKSFPTAYLCRDQFLPEMHAFKNQESKLIILYCLDEK--LSVQAATLLGQKGFDNVYLLSGGLSEYAALYPDHIEG 226

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: CCI50723.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 110.5 bits (275), Expect = 1.000e-20
Identity = 64/200 (32.00%), Postives = 111/200 (55.50%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD---------EMRTQDALEEAEGC-----------GPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SKI+SG T+NKV+ ++  ++++RR ETF R+    L  L  EY+D         EM  +    + + C           GP V+++ + +   Y+ P+L+LD R + E T     +   + FP + + +D   P+++++KN E  L+ILYD D+     A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYKDTKSKIDSGTTVNKVRQISQREFLKRRDETFRRITCKCLAELFGEYEDTNGKCAPGPEMLAKMVERDGKYCLDRVPVNNNSGGPRVISYEADEVEEYDAPYLILDTRSKEEFTTNR--LQRAQSFPSSFVCRDYILPQMQKFKNQENYLIILYDLDDTN--VAQTAHVLVQRGFDNLYVLTGGILEYADFHPEHIEG 217

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: OQR98488.1 (hypothetical protein ACHHYP_08613 [Achlya hypogyna])

HSP 1 Score: 110.2 bits (274), Expect = 1.300e-20
Identity = 63/204 (30.88%), Postives = 108/204 (52.94%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD------------------------EMRTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y   +SK+N+G T+N V++++  ++++RR ETF R+ P  L  L  EY+D                         M    A +     GP VV++ + +   Y+ P+L+LD R   +       I   + FP A L +D++ PE+ ++KN E  L+ILY  DE+    A  AT L ++G++N+++L+GG + +A   P++VEG
Sbjct:   27 KYKDTQSKLNTGNTVNNVRLISSKEFLKRRDETFRRITPKCLADLFNEYEDLGKGCDAASPEMVARMVKNDKGDYVMERHAADDNQAQSGPRVVSYDAEEGEEYDAPYLILDTRPREDFAENR--IHRAKSFPTAFLCRDQFLPEMHQFKNQESKLIILYCLDEKYSTQA--ATLLGQKGFDNIYLLSGGLSEYAATYPEHVEG 226

The following BLAST results are available for this feature:

BLAST of NO06G04130 vs. NCBI_GenBank

BLAST of NO06G04130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
ETP55062.1	1.100e-22	32.67	hypothetical protein F442_00349 [Phytophthora para...	[more]
XP_009822429.1	2.400e-22	32.02	hypothetical protein H257_01094 [Aphanomyces astac...	[more]
XP_008861479.1	4.200e-22	31.03	hypothetical protein H310_00454 [Aphanomyces invad...	[more]
ETO86067.1	5.400e-22	32.18	hypothetical protein F444_00357 [Phytophthora para...	[more]
XP_012198044.1	9.300e-22	30.73	hypothetical protein SPRG_04064 [Saprolegnia paras...	[more]
XP_008618744.1	1.200e-21	30.73	hypothetical protein SDRG_14398 [Saprolegnia dicli...	[more]
XP_024572279.1	4.600e-21	32.32	rhodanese domain containing protein [Plasmopara ha...	[more]
OQS04849.1	7.900e-21	30.88	sporangia induced hypothetical protein [Thraustoth...	[more]
CCI50723.1	1.000e-20	32.00	unnamed protein product [Albugo candida]	[more]
OQR98488.1	1.300e-20	30.88	hypothetical protein ACHHYP_08613 [Achlya hypogyna...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000058	NSK000058	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G04130.1	NO06G04130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558350	gene_6745	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G04130.1	NO06G04130.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G04130 ID=NO06G04130|Name=NO06G04130|organism=Nannochloropsis oceanica|type=gene|length=1038bp
ATGCATCGTGCCCGGTTGACCGAGAGTCGCCGCGCCTTGTCCTCCTCTTC
CACCTCTTCCTCCATCAGCGAGAGACCACTGCCTTTGCCGCCTTTGCCGC
CTCGCACCCAACGGCAATACCATCACGTGCGCAGCAAAATTAATTCGGGC
CCAACAATAAACAAGGTCAAGGTGGTGACTTTCGCGCAGTATGTGCGTCG
ACGGCAAGAGACGTTTTGTCGGGTCAATCCCGGACAGCTCCGAGCTCTAC
TGCTTGAATACGACGATGAAATGAGAACACAAGACGCACTGGAGGAGGCA
GAGGGCTGCGGCCCACTGGTAGTGACGCACGGGAGCCTGGATGATGCTGT
GTATGAGAAGCCTTTTTTGTTGCTCGATGTCCGCGACGAGGGCGAGAGCA
CACCCACTCTTGGGGTCATTACCCACACCCGTCCGTTTCCCCACGCGCAT
TTGCACCAGGACAAGTACTTTCCAGAGCTGCGCCGCTACAAGAATCTGGA
AAGGACATTGGTTATTTTGTACGATGACGATGAGCGTGCAGGACTTGCGG
CGTCGATGGCCACGCAGCTTGTGGAAAGGGGATGGGAGAACGTATTCGTG
TTGACGGGCGGGTTTACGGCCTTTGCCGAGGTCTGTCCGAAGTATGTGGA
GGGAGGGAGGGCGCAGCAGCAGGAAATGGAGGTTAGGAAAGCGGAACATG
AAGAAGTGGGTTCGCATGTGTCGCGCCTTTCGGCGCTCACGCTGGGCAAG
CTTCCAGGTGGAGCCATCACCAGCATCAGCAATACTAGCACCATCAGCAC
TAGCACCAGCACCAGCGGACGAGGACGAGACTACAGGCCAAAGGGCAGTG
TTTATAGAGGCAGGCATCGACAAGGAAATTCCGAGACGTGCTCGATTTTA
TCCTTGTCGTCGTGGCGAGGGAGGAAGAAGGGGAGTGTGAGCGCCCAGAG
CTTGGCACCAACGACCACTACCCTCAGCACTGCCTCCGTCGCCGAGTCGG
TCATCGAGCGGGCTCGGGCCAAGAAGGGACGCTTTTGA

protein sequence of NO06G04130.1

>NO06G04130.1-protein ID=NO06G04130.1-protein|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MHRARLTESRRALSSSSTSSSISERPLPLPPLPPRTQRQYHHVRSKINSG
PTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEA
EGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAH
LHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFV
LTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEVGSHVSRLSALTLGK
LPGGAITSISNTSTISTSTSTSGRGRDYRPKGSVYRGRHRQGNSETCSIL
SLSSWRGRKKGSVSAQSLAPTTTTLSTASVAESVIERARAKKGRF*

Synonyms

Publications