NO06G04130.1, NO06G04130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04130.1
Unique NameNO06G04130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr6:1156424..1157461 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1156424..1157461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04130.1 vs.
Match: XP_005855866.1 (testis 14 [Nannochloropsis gaditana CCMP526]; EKU20491.1 testis 14 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 165.2 bits (417), Expect = 3.500e-37
Identity = 88/158 (55.70%), Postives = 111/158 (70.25%), Query Frame = 0 
Query:  104 GPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGG----------RAQQQEMEVRKAEHEEVGSHVSRLSALTLGKL 252
            GPL+VTH S D+AVY+KPFL+LDVRD G+   +   I H RPFP AHLHQ+KY PELRRY+N   TL+I YDDDE+ G AAS+A QLVERGWENVFVL+GG  AFA+  P YVEGG          +A  +E + R+ + E +G   +R+SA +L +L
Sbjct:   30 GPLIVTHESADEAVYDKPFLILDVRD-GDQDHSKRRIVHARPFPLAHLHQEKYSPELRRYRNRVGTLIIFYDDDEKMGQAASLAAQLVERGWENVFVLSGGIEAFAQAWPAYVEGGLGMRCGGKGSKAGVEEGKGRREDVEPLGG--NRISAHSLSRL 184
The following BLAST results are available for this feature:
BLAST of NO06G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855866.13.500e-3755.70testis 14 [Nannochloropsis gaditana CCMP526]; EKU2... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04130NO06G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04130.1NO06G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04130.1.cds1NO06G04130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04130.1 ID=NO06G04130.1|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATGCATCGTGCCCGGTTGACCGAGAGTCGCCGCGCCTTGTCCTCCTCTTC
CACCTCTTCCTCCATCAGCGAGAGACCACTGCCTTTGCCGCCTTTGCCGC
CTCGCACCCAACGGCAATACCATCACGTGCGCAGCAAAATTAATTCGGGC
CCAACAATAAACAAGGTCAAGGTGGTGACTTTCGCGCAGTATGTGCGTCG
ACGGCAAGAGACGTTTTGTCGGGTCAATCCCGGACAGCTCCGAGCTCTAC
TGCTTGAATACGACGATGAAATGAGAACACAAGACGCACTGGAGGAGGCA
GAGGGCTGCGGCCCACTGGTAGTGACGCACGGGAGCCTGGATGATGCTGT
GTATGAGAAGCCTTTTTTGTTGCTCGATGTCCGCGACGAGGGCGAGAGCA
CACCCACTCTTGGGGTCATTACCCACACCCGTCCGTTTCCCCACGCGCAT
TTGCACCAGGACAAGTACTTTCCAGAGCTGCGCCGCTACAAGAATCTGGA
AAGGACATTGGTTATTTTGTACGATGACGATGAGCGTGCAGGACTTGCGG
CGTCGATGGCCACGCAGCTTGTGGAAAGGGGATGGGAGAACGTATTCGTG
TTGACGGGCGGGTTTACGGCCTTTGCCGAGGTCTGTCCGAAGTATGTGGA
GGGAGGGAGGGCGCAGCAGCAGGAAATGGAGGTTAGGAAAGCGGAACATG
AAGAAGTGGGTTCGCATGTGTCGCGCCTTTCGGCGCTCACGCTGGGCAAG
CTTCCAGGTGGAGCCATCACCAGCATCAGCAATACTAGCACCATCAGCAC
TAGCACCAGCACCAGCGGACGAGGACGAGACTACAGGCCAAAGGGCAGTG
TTTATAGAGGCAGGCATCGACAAGGAAATTCCGAGACGTGCTCGATTTTA
TCCTTGTCGTCGTGGCGAGGGAGGAAGAAGGGGAGTGTGAGCGCCCAGAG
CTTGGCACCAACGACCACTACCCTCAGCACTGCCTCCGTCGCCGAGTCGG
TCATCGAGCGGGCTCGGGCCAAGAAGGGACGCTTTTGA
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protein sequence of NO06G04130.1

>NO06G04130.1-protein ID=NO06G04130.1-protein|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MHRARLTESRRALSSSSTSSSISERPLPLPPLPPRTQRQYHHVRSKINSG
PTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEA
EGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAH
LHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFV
LTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEVGSHVSRLSALTLGK
LPGGAITSISNTSTISTSTSTSGRGRDYRPKGSVYRGRHRQGNSETCSIL
SLSSWRGRKKGSVSAQSLAPTTTTLSTASVAESVIERARAKKGRF*
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mRNA from alignment at chr6:1156424..1157461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04130.1 ID=NO06G04130.1|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at chr6:1156424..1157461+ (Nannochloropsis oceanica)
ATGCATCGTGCCCGGTTGACCGAGAGTCGCCGCGCCTTGTCCTCCTCTTC
CACCTCTTCCTCCATCAGCGAGAGACCACTGCCTTTGCCGCCTTTGCCGC
CTCGCACCCAACGGCAATACCATCACGTGCGCAGCAAAATTAATTCGGGC
CCAACAATAAACAAGGTCAAGGTGGTGACTTTCGCGCAGTATGTGCGTCG
ACGGCAAGAGACGTTTTGTCGGGTCAATCCCGGACAGCTCCGAGCTCTAC
TGCTTGAATACGACGATGAAATGAGAACACAAGACGCACTGGAGGAGGCA
GAGGGCTGCGGCCCACTGGTAGTGACGCACGGGAGCCTGGATGATGCTGT
GTATGAGAAGCCTTTTTTGTTGCTCGATGTCCGCGACGAGGGCGAGAGCA
CACCCACTCTTGGGGTCATTACCCACACCCGTCCGTTTCCCCACGCGCAT
TTGCACCAGGACAAGTACTTTCCAGAGCTGCGCCGCTACAAGAATCTGGA
AAGGACATTGGTTATTTTGTACGATGACGATGAGCGTGCAGGACTTGCGG
CGTCGATGGCCACGCAGCTTGTGGAAAGGGGATGGGAGAACGTATTCGTG
TTGACGGGCGGGTTTACGGCCTTTGCCGAGGTCTGTCCGAAGTATGTGGA
GGGAGGGAGGGCGCAGCAGCAGGAAATGGAGGTTAGGAAAGCGGAACATG
AAGAAGTGGGTTCGCATGTGTCGCGCCTTTCGGCGCTCACGCTGGGCAAG
CTTCCAGGTGGAGCCATCACCAGCATCAGCAATACTAGCACCATCAGCAC
TAGCACCAGCACCAGCGGACGAGGACGAGACTACAGGCCAAAGGGCAGTG
TTTATAGAGGCAGGCATCGACAAGGAAATTCCGAGACGTGCTCGATTTTA
TCCTTGTCGTCGTGGCGAGGGAGGAAGAAGGGGAGTGTGAGCGCCCAGAG
CTTGGCACCAACGACCACTACCCTCAGCACTGCCTCCGTCGCCGAGTCGG
TCATCGAGCGGGCTCGGGCCAAGAAGGGACGCTTTTGA
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Coding sequence (CDS) from alignment at chr6:1156424..1157461+

>NO06G04130.1 ID=NO06G04130.1|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr6:1156424..1157461+ (Nannochloropsis oceanica)
ATGCATCGTGCCCGGTTGACCGAGAGTCGCCGCGCCTTGTCCTCCTCTTC
CACCTCTTCCTCCATCAGCGAGAGACCACTGCCTTTGCCGCCTTTGCCGC
CTCGCACCCAACGGCAATACCATCACGTGCGCAGCAAAATTAATTCGGGC
CCAACAATAAACAAGGTCAAGGTGGTGACTTTCGCGCAGTATGTGCGTCG
ACGGCAAGAGACGTTTTGTCGGGTCAATCCCGGACAGCTCCGAGCTCTAC
TGCTTGAATACGACGATGAAATGAGAACACAAGACGCACTGGAGGAGGCA
GAGGGCTGCGGCCCACTGGTAGTGACGCACGGGAGCCTGGATGATGCTGT
GTATGAGAAGCCTTTTTTGTTGCTCGATGTCCGCGACGAGGGCGAGAGCA
CACCCACTCTTGGGGTCATTACCCACACCCGTCCGTTTCCCCACGCGCAT
TTGCACCAGGACAAGTACTTTCCAGAGCTGCGCCGCTACAAGAATCTGGA
AAGGACATTGGTTATTTTGTACGATGACGATGAGCGTGCAGGACTTGCGG
CGTCGATGGCCACGCAGCTTGTGGAAAGGGGATGGGAGAACGTATTCGTG
TTGACGGGCGGGTTTACGGCCTTTGCCGAGGTCTGTCCGAAGTATGTGGA
GGGAGGGAGGGCGCAGCAGCAGGAAATGGAGGTTAGGAAAGCGGAACATG
AAGAAGTGGGTTCGCATGTGTCGCGCCTTTCGGCGCTCACGCTGGGCAAG
CTTCCAGGTGGAGCCATCACCAGCATCAGCAATACTAGCACCATCAGCAC
TAGCACCAGCACCAGCGGACGAGGACGAGACTACAGGCCAAAGGGCAGTG
TTTATAGAGGCAGGCATCGACAAGGAAATTCCGAGACGTGCTCGATTTTA
TCCTTGTCGTCGTGGCGAGGGAGGAAGAAGGGGAGTGTGAGCGCCCAGAG
CTTGGCACCAACGACCACTACCCTCAGCACTGCCTCCGTCGCCGAGTCGG
TCATCGAGCGGGCTCGGGCCAAGAAGGGACGCTTTTGA
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Synonyms
Publications