NO06G04130, NO06G04130 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04130
Unique Name	NO06G04130
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1038
Alignment location	chr6:1156424..1157461 +

Link to JBrowse

Properties


Property Name	Value
Description	Testis 14

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1156424..1157461 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036873	Rhodanese-like_dom_sf
IPR001763	Rhodanese-like_dom

Homology

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_005855866.1 (testis 14 [Nannochloropsis gaditana CCMP526] >EKU20491.1 testis 14 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 165.6 bits (418), Expect = 2.700e-37
Identity = 88/158 (55.70%), Postives = 111/158 (70.25%), Query Frame = 0

Query:  104 GPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGG----------RAQQQEMEVRKAEHEEVGSHVSRLSALTLGKL 252
            GPL+VTH S D+AVY+KPFL+LDVRD G+   +   I H RPFP AHLHQ+KY PELRRY+N   TL+I YDDDE+ G AAS+A QLVERGWENVFVL+GG  AFA+  P YVEGG          +A  +E + R+ + E +G   +R+SA +L +L
Sbjct:   30 GPLIVTHESADEAVYDKPFLILDVRD-GDQDHSKRRIVHARPFPLAHLHQEKYSPELRRYRNRVGTLIIFYDDDEKMGQAASLAAQLVERGWENVFVLSGGIEAFAQAWPAYVEGGLGMRCGGKGSKAGVEEGKGRREDVEPLGG--NRISAHSLSRL 184

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: GAY03722.1 (Hypothetical protein PINS_011541 [Pythium insidiosum])

HSP 1 Score: 128.6 bits (322), Expect = 3.600e-26
Identity = 79/233 (33.91%), Postives = 122/233 (52.36%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEAE---------------------------GCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEVGSHVSRLS 245
            +Y + +SKI+SG T+NKV++++  ++++RR ETF RV    L ALL EY+D        EE E                             GP VV++ + +   Y+ P+L+LD R + E    +  IT  + FP A L++D   PE+ ++KN E  L+ILYD DE+       A  LV+RG++N++VLTGG   FA+  P  +EG    ++ ++  K   +EV    S LS
Sbjct:   22 KYANTQSKIDSGTTVNKVRLISHKEFLKRRDETFRRVTVKCLEALLAEYEDNGGCGXGCEEPEMVARMVKKEDGKFELQRVPADDNQSHNASGPRVVSYDAEEREEYDPPYLILDTRPKEEF--AVNRITRAKSFPAAFLNRDTLLPEMYKFKNQESKLIILYDQDEKT--VTQTAHTLVQRGFDNIYVLTGGLVDFADEFPDRIEGLPLPKKPVDPSKKVSKEVYKTASALS 250

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: GAY06754.1 (Hypothetical protein PINS_014557 [Pythium insidiosum])

HSP 1 Score: 127.9 bits (320), Expect = 6.200e-26
Identity = 79/233 (33.91%), Postives = 122/233 (52.36%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEAE---------------------------GCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEVGSHVSRLS 245
            +Y + +SKI+SG T+NKV++++  ++++RR ETF RV    L ALL EY+D        EE E                             GP VV++ + +   Y+ P+L+LD R + E    +  IT  + FP A L++D   PE+ ++KN E  L+ILYD DE+       A  LV+RG++N++VLTGG   FA+  P  +EG    ++ ++  K   +EV    S LS
Sbjct:   13 KYANTQSKIDSGTTVNKVRLISHKEFLKRRDETFRRVTVKCLEALLAEYEDNGGCGVGCEEPEMVARMVKKEDGKFELQRVPADDNQSHNASGPRVVSYDAEEREEYDPPYLILDTRPKEEF--AVNRITRAKSFPAAFLNRDTLLPEMYKFKNQESKLIILYDQDEKT--VTQTAHTLVQRGFDNIYVLTGGLVDFADEFPDRIEGLPLPKKPVDPSKKVSKEVYKTASALS 241

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: CBN78220.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.9 bits (294), Expect = 6.400e-23
Identity = 77/190 (40.53%), Postives = 108/190 (56.84%), Query Frame = 0

Query:   34 PRTQRQYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMR--TQDALE--EAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFA-EVCPKYVEG 219
            PR  R Y  V+SK+ +G T++KV  VT  Q++RRR+E + R+ P QL  LL EY+ + +   QD  +  + +  GP VV +       Y++P+L+LDVR   E       I   R F    L+QD+  PEL  YKN E  LVILY +D+    A   A  L+ RG++N+FVL+GG  AFA E    +VEG
Sbjct:   22 PRNPR-YAGVKSKVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRSPEEFKRCR--IVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDAD--AGHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEG 206

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: ETI57323.1 (hypothetical protein F443_00370 [Phytophthora parasitica P1569])

HSP 1 Score: 117.5 bits (293), Expect = 8.400e-23
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    CGP +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYKNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCGPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 219

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_008889914.1 (hypothetical protein PPTG_00289 [Phytophthora parasitica INRA-310] >ETK97087.1 hypothetical protein L915_00325 [Phytophthora parasitica] >ETL50435.1 hypothetical protein L916_00329 [Phytophthora parasitica] >ETM56748.1 hypothetical protein L914_00329 [Phytophthora parasitica] >ETN23763.1 hypothetical protein PPTG_00289 [Phytophthora parasitica INRA-310] >ETP27081.1 hypothetical protein F441_00352 [Phytophthora parasitica CJ01A1] >KUF87172.1 Centrosomal protein of 41 kDa [Phytophthora nicotianae])

HSP 1 Score: 117.5 bits (293), Expect = 8.400e-23
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    CGP +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYKNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCGPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 219

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: ETM03482.1 (hypothetical protein L917_00307 [Phytophthora parasitica])

HSP 1 Score: 117.5 bits (293), Expect = 8.400e-23
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    CGP +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   22 KYKNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCGPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 219

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_002998076.1 (sporangia induced conserved hypothetical protein [Phytophthora infestans T30-4] >EEY70422.1 sporangia induced conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.5 bits (293), Expect = 8.400e-23
Identity = 67/214 (31.31%), Postives = 117/214 (54.67%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM---------------RTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEGGRAQQQEMEVRK 231
            +Y + +SKI+SG T+NKV++++  ++++RR ETF R+    L  L  EY+D       EM               R     +  E CGP +V++ + +   Y+ P+L+LD R + E       I   + +P   L++D   PE+ ++KN +  L+I+YD D++    A  A  LV+RG++N++VLTGG   FA+  P+++EG     + +++ K
Sbjct:   22 KYKNTQSKIDSGTTVNKVRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGPNGDFTMERVPVGEDNQESCGPRIVSYEADEKEDYDAPYLVLDTRSKEEFAANR--IHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIIIYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLLDFADEYPEHIEGTPLPPKPVDLAK 231

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: KUF97902.1 (Adenylosuccinate synthetase [Phytophthora nicotianae])

HSP 1 Score: 117.5 bits (293), Expect = 8.400e-23
Identity = 66/202 (32.67%), Postives = 116/202 (57.43%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM-----------RTQDALEEAEG----CGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NK+++++  ++++RR ETF R+    L  L  EY+D       EM            T + +  +EG    CGP +V++ + +   Y+ P+L+LD R + E    +  I   + +P   L++D   PE+ ++KN +  L+ILYD D++    A  A  LV+RG++N++VLTGG   +A+  P+++EG
Sbjct:   29 KYKNTQSKIDSGTTVNKIRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGANGEFTMERVPVSEGNQENCGPRIVSYEADEMEDYDAPYLILDTRSKEEF--AVNRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLVDYADEYPEHIEG 226

[Close]

BLAST of NO06G04130 vs. NCBI_GenBank
Match: XP_009532696.1 (hypothetical protein PHYSODRAFT_317473 [Phytophthora sojae] >EGZ12363.1 hypothetical protein PHYSODRAFT_317473 [Phytophthora sojae])

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22
Identity = 68/202 (33.66%), Postives = 110/202 (54.46%), Query Frame = 0

Query:   39 QYHHVRSKINSGPTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDD-------EM---------------RTQDALEEAEGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAHLHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFVLTGGFTAFAEVCPKYVEG 219
            +Y + +SKI+SG T+NKV++++  ++++RR ETF R+    L  L  EY+D       EM               R     +  E CGP +V++ + +   Y+ P+L+LD R + E       I   + +P   L++D   PE+  +KN E  LVILYD D++    A  A  LV+RG++N++VLTGG   +A+  P ++EG
Sbjct:   22 RYKNTQSKIDSGSTVNKVRLISHKEFLKRRDETFRRITCRCLADLFSEYEDTGSASQPEMVARMVKGANGEFSMERVPVGDDNQESCGPRIVSYDAEEKEDYDPPYLVLDTRSKEEFAANR--IHRAKNYPANFLNRDVLLPEMHLFKNQESKLVILYDLDDKT--VAQTAHTLVQRGFDNIYVLTGGLIDYADEFPDHIEG 219

The following BLAST results are available for this feature:

BLAST of NO06G04130 vs. NCBI_GenBank

BLAST of NO06G04130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005855866.1	2.700e-37	55.70	testis 14 [Nannochloropsis gaditana CCMP526] >EKU2...	[more]
GAY03722.1	3.600e-26	33.91	Hypothetical protein PINS_011541 [Pythium insidios...	[more]
GAY06754.1	6.200e-26	33.91	Hypothetical protein PINS_014557 [Pythium insidios...	[more]
CBN78220.1	6.400e-23	40.53	conserved unknown protein [Ectocarpus siliculosus]	[more]
ETI57323.1	8.400e-23	32.67	hypothetical protein F443_00370 [Phytophthora para...	[more]
XP_008889914.1	8.400e-23	32.67	hypothetical protein PPTG_00289 [Phytophthora para...	[more]
ETM03482.1	8.400e-23	32.67	hypothetical protein L917_00307 [Phytophthora para...	[more]
XP_002998076.1	8.400e-23	31.31	sporangia induced conserved hypothetical protein [...	[more]
KUF97902.1	8.400e-23	32.67	Adenylosuccinate synthetase [Phytophthora nicotian...	[more]
XP_009532696.1	1.100e-22	33.66	hypothetical protein PHYSODRAFT_317473 [Phytophtho...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000058	NSK000058	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G04130.1	NO06G04130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558350	gene_6745	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G04130.1	NO06G04130.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G04130 ID=NO06G04130|Name=NO06G04130|organism=Nannochloropsis oceanica|type=gene|length=1038bp
ATGCATCGTGCCCGGTTGACCGAGAGTCGCCGCGCCTTGTCCTCCTCTTC
CACCTCTTCCTCCATCAGCGAGAGACCACTGCCTTTGCCGCCTTTGCCGC
CTCGCACCCAACGGCAATACCATCACGTGCGCAGCAAAATTAATTCGGGC
CCAACAATAAACAAGGTCAAGGTGGTGACTTTCGCGCAGTATGTGCGTCG
ACGGCAAGAGACGTTTTGTCGGGTCAATCCCGGACAGCTCCGAGCTCTAC
TGCTTGAATACGACGATGAAATGAGAACACAAGACGCACTGGAGGAGGCA
GAGGGCTGCGGCCCACTGGTAGTGACGCACGGGAGCCTGGATGATGCTGT
GTATGAGAAGCCTTTTTTGTTGCTCGATGTCCGCGACGAGGGCGAGAGCA
CACCCACTCTTGGGGTCATTACCCACACCCGTCCGTTTCCCCACGCGCAT
TTGCACCAGGACAAGTACTTTCCAGAGCTGCGCCGCTACAAGAATCTGGA
AAGGACATTGGTTATTTTGTACGATGACGATGAGCGTGCAGGACTTGCGG
CGTCGATGGCCACGCAGCTTGTGGAAAGGGGATGGGAGAACGTATTCGTG
TTGACGGGCGGGTTTACGGCCTTTGCCGAGGTCTGTCCGAAGTATGTGGA
GGGAGGGAGGGCGCAGCAGCAGGAAATGGAGGTTAGGAAAGCGGAACATG
AAGAAGTGGGTTCGCATGTGTCGCGCCTTTCGGCGCTCACGCTGGGCAAG
CTTCCAGGTGGAGCCATCACCAGCATCAGCAATACTAGCACCATCAGCAC
TAGCACCAGCACCAGCGGACGAGGACGAGACTACAGGCCAAAGGGCAGTG
TTTATAGAGGCAGGCATCGACAAGGAAATTCCGAGACGTGCTCGATTTTA
TCCTTGTCGTCGTGGCGAGGGAGGAAGAAGGGGAGTGTGAGCGCCCAGAG
CTTGGCACCAACGACCACTACCCTCAGCACTGCCTCCGTCGCCGAGTCGG
TCATCGAGCGGGCTCGGGCCAAGAAGGGACGCTTTTGA

protein sequence of NO06G04130.1

>NO06G04130.1-protein ID=NO06G04130.1-protein|Name=NO06G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MHRARLTESRRALSSSSTSSSISERPLPLPPLPPRTQRQYHHVRSKINSG
PTINKVKVVTFAQYVRRRQETFCRVNPGQLRALLLEYDDEMRTQDALEEA
EGCGPLVVTHGSLDDAVYEKPFLLLDVRDEGESTPTLGVITHTRPFPHAH
LHQDKYFPELRRYKNLERTLVILYDDDERAGLAASMATQLVERGWENVFV
LTGGFTAFAEVCPKYVEGGRAQQQEMEVRKAEHEEVGSHVSRLSALTLGK
LPGGAITSISNTSTISTSTSTSGRGRDYRPKGSVYRGRHRQGNSETCSIL
SLSSWRGRKKGSVSAQSLAPTTTTLSTASVAESVIERARAKKGRF*

Synonyms

Publications