NO06G04060, NO06G04060 (gene) Nannochloropsis oceanica

Overview
NameNO06G04060
Unique NameNO06G04060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr6:1131479..1132915 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1131479..1132915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G04060 vs. NCBI_GenBank
Match: XP_011395920.1 (hypothetical protein F751_0434 [Auxenochlorella protothecoides] >KFM23050.1 hypothetical protein F751_0434 [Auxenochlorella protothecoides])

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-10
Identity = 85/355 (23.94%), Postives = 123/355 (34.65%), Query Frame = 0
Query:   13 LFLLAFLALLPTPSSSSAWDPHP----WPSTPPYVEGWYVRLTSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNPPLESVE-------IRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIKQEIXXXXXXXXXXXXXXXXXXXXXXXTMTAVQEGPLLFLHITLPTARFLAQIEVSPWAY---DGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEGRAR 354
            L L    AL PTP+ +S +DPH      P+   + EGWYVR+T+       G      +LP S    +       L  +       V +G+  L++ E       + G  G+ + + P+  T P F             ++ AD                               T      G    LH+TL      A+    P  +   D SP           V LHW++++L + + ++    + + G    G       GL H EKNWG  FP  W WAQG+  AP      + L          G  SPG             G  WDF+P +      E D C    R
Sbjct:    8 LLLCGLAALAPTPARASLYDPHVPTMYDPAFRTWFEGWYVRITTAQPEGEGGDDGTGPVLPSSLGLIVGTMPRGRLGWNISLASLLVQQGSRALQTFESTGVQLSVTGAGGQTVVRDPEPHTPPDF-------------SVVAD-----------------------------DGTALLHMRGEQCALHVTLGGLTMDARCTGPPLRWGPNDESPEGGISGLPTQLVGLHWFVYSLGTPVAWSL--RNDSSGETVTGA------GLAHFEKNWGGTFPPGWAWAQGLDLAPGRLVPDAWL---------LGVRSPG-------------GREWDFRPQDPTSFTAEADPCNATLR 290          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: XP_015758722.1 (PREDICTED: uncharacterized protein LOC107337985 isoform X1 [Acropora digitifera])

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-9
Identity = 67/267 (25.09%), Postives = 106/267 (39.70%), Query Frame = 0
Query:   88 GKTNKTTVYEGNPPLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIKQEIXXXXXXXXXXXXXXXXXXXXXXXTMTAVQEGPLLFLHITLPTARFLAQIEV-SPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQVSPGIFT---HFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEG 351
            G  +   V+ G+P  + V++    G+ +T  PD+++  +F W A++      D                                         QE    F +I      F+  +   +PW   G   P  WT   DE PLHWY+++L S L+       Q       G+++  R G+V  +K WG  FP +W+WAQG       H +S S     +F LS G +    F+   H   +R     I  +F+P NS L  + ++ C G
Sbjct:   11 GDDSSMEVFRGSPANDDVKVTSQ-GKLVTTDPDFKSSANFEWEAKSCGFFQVDE----------------------------------------QETRFNFTNIN--GVSFIGILGAPNPWGPYGE-GPEGWT---DEFPLHWYVYSLGSELINYNWVNEQT------GEMLRGRQGVVFQQKVWGNTFPLAWVWAQGF------HWASRS-----SFALSLGVLGTAGFSKPIHLVGYRSST--ITLNFRPSNSRL-RKNINECSG 210          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: KLO17662.1 (hypothetical protein SCHPADRAFT_155174 [Schizopora paradoxa])

HSP 1 Score: 73.6 bits (179), Expect = 1.900e-9
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 0
Query:  225 VPLHWYI---HTLSSRLLYARLELHQAEGA-REGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSS-SLPSSVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDF 334
            +PLHW+I   H+L+S L+     +++ +G+ R     +    G  H+EKNWG  FP+ W W QG +  PSSHAS+S   P+S           P + ++   +R     I WDF
Sbjct:  182 IPLHWHIFSTHSLASYLITRVRRIYREDGSYRRDENTVAEGSGFAHVEKNWGDGFPEGWTWGQGFSPTPSSHASASYDRPTSTLAFAGGTTGFPFLKSYLVIYRSPSKNILWDF 295          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: XP_011390265.1 (hypothetical protein UMAG_03829 [Ustilago maydis 521] >KIS68247.1 hypothetical protein UMAG_03829 [Ustilago maydis 521])

HSP 1 Score: 72.0 bits (175), Expect = 5.600e-9
Identity = 39/129 (30.23%), Postives = 59/129 (45.74%), Query Frame = 0
Query:  211 GSPRPHSWTDIIDE-VPLHWYIHTLSSRLLYARLELHQAEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHA--SSSSLPSSVAFVLSYGQV-SPGIFTHFAHFRDEELGIAWDFKP 336
            GS  P  W   +   +PLHWY+H+ S+  +++   L       E    + +  GL+H+EKNWG+ FP  W+WA   +  P  +   S SS P S+   L+ G +     F    H   +     W F P
Sbjct:  339 GSRGPEGWIQHLGAFLPLHWYVHSSSAPAMFSLEHLAPDSARLELDNAIAAGRGLLHVEKNWGQSFPSGWMWAHAASPLPDPNVRPSYSSTPDSIHLSLAGGSILGLTAFLVGIHIIQDHAEFHWHFAP 467          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: CBQ68441.1 (conserved hypothetical protein [Sporisorium reilianum SRZ2])

HSP 1 Score: 69.3 bits (168), Expect = 3.600e-8
Identity = 44/135 (32.59%), Postives = 62/135 (45.93%), Query Frame = 0
Query:  211 GSPRPHSWTDIIDE-VPLHWYIHTLSSRLLYA--RLELHQAEGAREGGKVME----SRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQVSPGIFTHF---AHFRDEELGIAWDFKP 336
            G+  P  W   +   +PLHWY+H+ S+   ++   + L      R  G  ++    +  GL+H+EKNWG  FP  W+WA G +  P     SSS PS  +  LS    S    T F    H  D E    W+F P
Sbjct:  341 GTRGPEGWIQHLGALLPLHWYVHSTSAPATFSLEHVALPSTSADRPRGLQLDDAVAAGRGLLHIEKNWGHAFPSGWMWAHGASPLPDPSVPSSSSPSQPSARLSLAGGSILGLTAFLVGIHITDGEQH-TWNFAP 474          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: CDU25356.1 (uncharacterized protein SPSC_05190 [Sporisorium scitamineum])

HSP 1 Score: 68.9 bits (167), Expect = 4.700e-8
Identity = 38/126 (30.16%), Postives = 60/126 (47.62%), Query Frame = 0
Query:  193 LPTARFLAQIEVSPWAYDGSPRPHSWTDIIDE-VPLHWYIHTLSSRLLYARLELHQAEGAREGGKV------MESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQV 312
            +P     A    S W   G+  P  W   +   +PLHWY+H+ S+   ++ LE        +  +V      + +  GL+H+EKNWG+ FP  W+WA G ++ P     SS+   SV   L+ G +
Sbjct:  318 VPWQPLSASSSPSQWLPMGTRGPEGWIQHLGALIPLHWYVHSSSAPATFS-LEHVAFSSTPDEDRVPQLDDAVAAGRGLLHVEKNWGQAFPSGWMWAHGASSLPDPSVPSSTSAPSVRLSLAGGSI 442          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: CCX30652.1 (Similar to Probable tocopherol cyclase, chloroplastic; acc. no. Q6K7V6 [Pyronema omphalodes CBS 100304])

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-7
Identity = 38/138 (27.54%), Postives = 66/138 (47.83%), Query Frame = 0
Query:  225 VPLHWYIHTLSSRLLYARLELHQAEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPV--------NSVLVAEEVDGCEGRARF 355
            +PLHW + + +S   Y              GK +E+  G+ H+EKNWG  FPD W W QG + +P S  +     ++  FV++ G+ + G   +   +R E+  + + FKP+         ++ + E  D  +G  R+
Sbjct:  177 LPLHWNVWSTASTAKYT---------VTSNGKQLEAGEGIAHIEKNWGASFPDGWTWVQGFSQSPDSGVARH---ATRTFVMTGGKTT-GSKAYLCGYRSEK--VEFSFKPLWTLMPFSFQTMFIKESFDSKQGTGRW 299          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: XP_014655815.1 (conserved hypothetical protein [Moesziomyces antarcticus] >GAK66137.1 conserved hypothetical protein [Moesziomyces antarcticus])

HSP 1 Score: 65.9 bits (159), Expect = 4.000e-7
Identity = 47/153 (30.72%), Postives = 68/153 (44.44%), Query Frame = 0
Query:  206 PWAYDGSPRPHSWTDIIDEV-PLHWYIHTLSSRLLYARLELHQ---AEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLSYGQVSPGIFTHF---AHFRDEE-LGIAWDFKPVNSVLVAEEVDGCEG 351
            P    GS  P  W   +  V PLHWY+HT S+  +++   + Q   +  + E    + +   L+H+EKNWG  FP  W+W  G  A+P S  S     S  A  LS    S    T F    H +  +   + W+F P ++V      DG  G
Sbjct:  450 PHGLMGSKGPEGWIQHLGAVLPLHWYVHTSSAPAMFSLEHVVQSAPSNSSEELEDAVAAGRALLHVEKNWGHGFPSGWMWVHG--ASPLSDPSLPHTDSGPAVRLSLAGGSILGLTAFLVGIHIKPTQGREVDWNFTPPSAVGPQHAFDGPGG 600          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: SAM84543.1 (uncharacterized protein UBRO_05823 [Ustilago bromivora])

HSP 1 Score: 65.9 bits (159), Expect = 4.000e-7
Identity = 40/136 (29.41%), Postives = 64/136 (47.06%), Query Frame = 0
Query:  211 GSPRPHSWTDIID-EVPLHWYIHTLSSRLLYARLELHQAEG------AREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAA--PSSHASSSSLPSSVAFVLSYGQV-SPGIFTHFAHFRDEELG-IAWDFKP 336
            G   P  W   +   +PLHWY+H+ S+  L++   +  ++G      ARE  K + +    +H+EKNWG+ FP  W+W  G T    PS   +++++       L+ G +     F    H R E  G   W+F P
Sbjct:  337 GGSGPEGWIQHLGLLLPLHWYVHSTSAPALFSIEHISLSQGQRGENEARELEKAVAAGRASLHIEKNWGQAFPSGWMWCHGSTPLLDPSLSPTTTAVEPQARISLAGGSILGLTAFLAGVHIRKEGAGEWDWNFTP 472          
BLAST of NO06G04060 vs. NCBI_GenBank
Match: SJX64075.1 (uncharacterized protein SRS1_14730 [Sporisorium reilianum f. sp. reilianum])

HSP 1 Score: 65.9 bits (159), Expect = 4.000e-7
Identity = 36/105 (34.29%), Postives = 50/105 (47.62%), Query Frame = 0
Query:  211 GSPRPHSWTDIIDE-VPLHWYIHTLSSRLLYA-------RLELHQAEGAREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPSSVAFVLS 308
            G+  P  W   +   +PLHWY+H+ S+   ++            Q  G +    V   R GL+H+EKNWG  FP  W+WA G +  P     SSS PS  +  LS
Sbjct:  341 GTRGPEGWIQHLGALLPLHWYVHSTSAPATFSLEHVALPSTSADQPRGLQLDDAVAAGR-GLLHIEKNWGHAFPSGWMWAHGASPLPDPSVPSSSSPSQPSARLS 444          
The following BLAST results are available for this feature:
BLAST of NO06G04060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_011395920.18.600e-1023.94hypothetical protein F751_0434 [Auxenochlorella pr... [more]
XP_015758722.11.500e-925.09PREDICTED: uncharacterized protein LOC107337985 is... [more]
KLO17662.11.900e-934.21hypothetical protein SCHPADRAFT_155174 [Schizopora... [more]
XP_011390265.15.600e-930.23hypothetical protein UMAG_03829 [Ustilago maydis 5... [more]
CBQ68441.13.600e-832.59conserved hypothetical protein [Sporisorium reilia... [more]
CDU25356.14.700e-830.16uncharacterized protein SPSC_05190 [Sporisorium sc... [more]
CCX30652.12.400e-727.54Similar to Probable tocopherol cyclase, chloroplas... [more]
XP_014655815.14.000e-730.72conserved hypothetical protein [Moesziomyces antar... [more]
SAM84543.14.000e-729.41uncharacterized protein UBRO_05823 [Ustilago bromi... [more]
SJX64075.14.000e-734.29uncharacterized protein SRS1_14730 [Sporisorium re... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000067NSK000067Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04060.1NO06G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|126204gene_6737Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100365g5gene4128Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04060.1NO06G04060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04060 ID=NO06G04060|Name=NO06G04060|organism=Nannochloropsis oceanica|type=gene|length=1437bp
ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA
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protein sequence of NO06G04060.1

>NO06G04060.1-protein ID=NO06G04060.1-protein|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MHWQSHPILFPFLFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRL
TSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNP
PLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIK
QEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLA
QIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEG
AREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS
SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEG
RARFVLEGWGEEEGGREEEERKRMIRGAAPGAMAEKREEEEEEKEEEEKK
GGSGPGKLVAGALFPPSPLTPRRRRLVLELTFPLGSAACLSGPTGKGFEK
LCQESFQGEARLIASVMKGGGGKRWRGR*
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Synonyms
Publications