NO06G04060.1, NO06G04060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04060.1
Unique NameNO06G04060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr6:1131479..1132915 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1131479..1132915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04060.1 vs.
Match: EWM26397.1 (hypothetical protein Naga_100365g5 [Nannochloropsis gaditana])

HSP 1 Score: 423.7 bits (1088), Expect = 7.600e-115
Identity = 222/384 (57.81%), Postives = 270/384 (70.31%), Query Frame = 0 
Query:   13 LFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRLTSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNPPLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIKQEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLAQIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEGAREGGK------------VMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS------------SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEGRARFVLEGWG--EEEGGREEEE 371
            L  L FL LLP PSS SAWDPHPWPSTPPYVEGWYVRL+ L+T D++ +IFGASLLP +PP SLPP Y+AILHGD  TNKT VYE  PPLE+VEIR   G+ +T++ DW+  P FTWR             A+  A +Q        S S++SS S  +SS   +M A+Q    LFL +TLPTA F AQI++ PW YDG PRPHSWTD++D VPLHWYIH+LSSR++YARLEL + EG +EGG+            ++ES  G VHLEKNWG+RFPD+WLW+QGV + P S  SSS  PS            S+AFV SYGQV+PG+FTHFAHFRD++LG+AWDFKP +SVLV E V+GC+GRARFVLEGWG  E+EGG  + E
Sbjct:   35 LATLHFLFLLP-PSSPSAWDPHPWPSTPPYVEGWYVRLSGLETGDSIALIFGASLLPPAPPPSLPPVYLAILHGDVLTNKTVVYESTPPLEAVEIRQKNGQPVTEAVDWKAPPGFTWRVIDE---------AEDGAARQAPQG----SKSTTSSFSPEASS---SMNAIQRARHLFLRVTLPTAAFWAQIDIPPWKYDGPPRPHSWTDVVDAVPLHWYIHSLSSRVVYARLELKE-EGRQEGGRAVEGKGGGRGKRIIESHRGQVHLEKNWGRRFPDAWLWSQGVASLPLSDPSSSPSPSTSPSTSSTRNASSIAFVFSYGQVTPGVFTHFAHFRDQDLGLAWDFKPSSSVLVEESVEGCQGRARFVLEGWGAEEQEGGGGDGE 400
The following BLAST results are available for this feature:
BLAST of NO06G04060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26397.17.600e-11557.81hypothetical protein Naga_100365g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04060NO06G04060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04060.1NO06G04060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04060.1.cds1NO06G04060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA
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protein sequence of NO06G04060.1

>NO06G04060.1-protein ID=NO06G04060.1-protein|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MHWQSHPILFPFLFLLAFLALLPTPSSSSAWDPHPWPSTPPYVEGWYVRL
TSLDTSDTLGVIFGASLLPLSPPSSLPPCYVAILHGDGKTNKTTVYEGNP
PLESVEIRGHYGRNITKSPDWRTEPHFTWRARTPSHHNSDNLTADTEAIK
QEINNMMLSSSSSSSSLSSSSSSPFTTMTAVQEGPLLFLHITLPTARFLA
QIEVSPWAYDGSPRPHSWTDIIDEVPLHWYIHTLSSRLLYARLELHQAEG
AREGGKVMESRHGLVHLEKNWGKRFPDSWLWAQGVTAAPSSHASSSSLPS
SVAFVLSYGQVSPGIFTHFAHFRDEELGIAWDFKPVNSVLVAEEVDGCEG
RARFVLEGWGEEEGGREEEERKRMIRGAAPGAMAEKREEEEEEKEEEEKK
GGSGPGKLVAGALFPPSPLTPRRRRLVLELTFPLGSAACLSGPTGKGFEK
LCQESFQGEARLIASVMKGGGGKRWRGR*
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mRNA from alignment at chr6:1131479..1132915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr6:1131479..1132915+ (Nannochloropsis oceanica)
ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA
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Coding sequence (CDS) from alignment at chr6:1131479..1132915+

>NO06G04060.1 ID=NO06G04060.1|Name=NO06G04060.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr6:1131479..1132915+ (Nannochloropsis oceanica)
ATGCACTGGCAATCCCACCCCATCCTCTTTCCTTTCCTCTTCCTCCTCGC
CTTTCTCGCCCTACTGCCCACACCCTCATCCTCTTCCGCCTGGGACCCCC
ACCCCTGGCCCTCCACCCCTCCCTACGTGGAGGGATGGTACGTCCGTCTC
ACTAGCTTGGATACGTCCGACACTCTAGGGGTTATCTTCGGTGCCTCCTT
GCTGCCCCTCTCCCCCCCTTCCTCCCTACCCCCCTGCTATGTCGCGATCC
TCCACGGGGACGGCAAGACGAACAAGACCACTGTTTACGAAGGGAACCCG
CCGTTGGAGTCCGTGGAGATCCGAGGGCATTATGGCCGAAACATTACCAA
GTCACCGGATTGGAGGACAGAACCTCATTTCACCTGGCGCGCCCGCACCC
CTTCTCATCACAACTCCGACAATCTTACCGCCGACACCGAGGCCATCAAG
CAAGAAATCAATAATATGATGCTTTCCTCCTCGTCGTCGTCCTCCTCCCT
CTCCTCCTCCTCTTCCTCCCCCTTCACCACCATGACCGCAGTCCAGGAGG
GCCCCTTGCTCTTCCTGCACATCACCCTGCCCACCGCCCGCTTTCTTGCC
CAAATCGAGGTTTCTCCCTGGGCGTACGACGGTTCTCCACGTCCTCACAG
CTGGACGGACATTATTGACGAGGTTCCGTTGCACTGGTACATCCACACCC
TCTCCTCCCGTCTCCTCTACGCCCGCTTGGAGCTGCATCAAGCAGAGGGC
GCGAGGGAGGGAGGGAAGGTGATGGAGAGTCGGCACGGGCTTGTGCATCT
CGAGAAGAACTGGGGAAAGCGTTTCCCAGACTCGTGGTTGTGGGCGCAGG
GCGTGACGGCAGCCCCTTCCTCCCACGCCTCCTCTTCCTCCCTCCCTTCC
TCGGTGGCGTTCGTCCTTTCCTACGGTCAGGTTTCACCTGGAATATTTAC
TCATTTCGCGCATTTTCGGGACGAGGAGCTGGGCATCGCCTGGGACTTCA
AGCCGGTGAACTCGGTGCTGGTGGCGGAGGAGGTGGATGGATGTGAAGGG
AGGGCGAGGTTCGTCCTGGAGGGATGGGGTGAGGAAGAGGGAGGGAGGGA
GGAGGAGGAGAGGAAGAGGATGATCCGTGGTGCTGCCCCGGGTGCAATGG
CTGAGAAAAGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGAAG
GGAGGGAGTGGCCCTGGCAAGCTTGTTGCGGGTGCGCTTTTCCCTCCCTC
TCCTTTGACCCCGCGACGTCGGCGGCTCGTGCTGGAATTAACGTTTCCGT
TAGGCAGTGCGGCCTGCCTCTCAGGGCCGACGGGGAAAGGCTTTGAAAAA
CTGTGCCAGGAGTCGTTCCAGGGCGAGGCCAGGCTGATCGCGTCAGTGAT
GAAGGGGGGGGGAGGGAAGAGGTGGCGAGGGAGGTGA
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Synonyms
Publications