NO06G04050, NO06G04050 (gene) Nannochloropsis oceanica

Overview
NameNO06G04050
Unique NameNO06G04050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr6:1127489..1128112 -

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Properties
Property NameValue
DescriptionVesicle transport protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1127489..1128112 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_005855868.1 (vesicle transport protein [Nannochloropsis gaditana CCMP526] >EKU20493.1 vesicle transport protein [Nannochloropsis gaditana CCMP526] >EWM26400.1 vesicle transport protein [Nannochloropsis gaditana])

HSP 1 Score: 318.5 bits (815), Expect = 1.500e-83
Identity = 156/207 (75.36%), Postives = 175/207 (84.54%), Query Frame = 0
Query:    1 MNLEAGLNPGRGASHSSTSSAQAAFASSSPSFMDSARRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHDGSLG 208
            MNLE+GL P  GA                 +FMDSARRLLGVEARPKT+CE++EEDMCWWCP+LTWQ R+FGCLCCF++G+ILE GSFFRFTKLLTG P PFAVMYT+GNLISLAGSCFLSGPF+Q KSMFHPTRA+CT+VYVLTLV TL +AFSDVPGQG LLV+MII+QF+SL YY+LSYIPFARQMVWQTCGSCLGLG  GS G
Sbjct:    1 MNLESGLGP--GAXXXXXXXXXXXXXXXXXNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_009038786.1 (hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens] >EGB06614.1 hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens])

HSP 1 Score: 154.5 bits (389), Expect = 3.700e-34
Identity = 76/167 (45.51%), Postives = 112/167 (67.07%), Query Frame = 0
Query:   33 MDSARRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSD--VPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSC 198
            M S R LL  E RP+T  EQ+EE+ C  CP L+W+ R+ G   CF LG+++E+GSF R  +L+ G+P PFAV Y+LGN+I++  S FL+GP+ Q KSM  PTR + TA Y++ +  TL VA  D  +P +  L+++++ +Q ++L +Y++SYIPFAR  V   C  C
Sbjct:    1 MASTRSLLTGEPRPQTVAEQVEEECCKACPRLSWKQRLIGFSLCFALGVVVELGSFMRIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFDARIPARAGLIILLVCVQTIALFWYMISYIPFARDFVKNCCKGC 167          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: CBN78912.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 140.2 bits (352), Expect = 7.300e-30
Identity = 71/163 (43.56%), Postives = 109/163 (66.87%), Query Frame = 0
Query:   31 SFMDSARRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVA---FSDVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMV 191
            S   S+ RLLG E   K+  ++MEE +C  CPSL+W++R+ G   C  +G  L  GS FR  +LLTG+P PF + ++LG+ +++  S FL+GP+ Q K MF+P RA+ T++Y+ TL  TL VA   ++ VP +G LL+ +++ QF+S  +Y LSY+PFAR+ +
Sbjct:    7 SMKASSMRLLGGEPEEKSTLQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 169          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: POM70981.1 (Vesicle transport protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 133.3 bits (334), Expect = 8.900e-28
Identity = 63/149 (42.28%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   59 WWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIM-IIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHDGSL 207
            W CPSL++Q RI GC+ CF+LG +L +GS FR  KL+ G+P PFA+ Y++GN++S+  + F  GP+ Q ++MFH  R     VYV+ + LTL + FS+      LLV++ +++QF++L +Y LSY+P+ R +    C   LGL +D  +
Sbjct:   31 WLCPSLSYQERIIGCVTCFMLGFLLSLGSTFRLAKLVHGNPAPFAIAYSIGNILSICCTTFFVGPWKQVQTMFHSKRRYSAIVYVVFMFLTLLLCFSNHIHHRMLLVLLSVLVQFLALVWYTLSYVPYGRSIALSCCKRALGLANDDDM 179          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_002997870.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY67845.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 131.7 bits (330), Expect = 2.600e-27
Identity = 68/168 (40.48%), Postives = 102/168 (60.71%), Query Frame = 0
Query:   37 RRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFS-DVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHD 204
            ++LL  E+   T       +  W CPSL++Q R+ GC+ CF+LG +L +GS FR  KL  G+P PFA+ YT+GN++S+  + F  GP+ Q ++MFH  R     VYV+ + +TL + FS  V  +   ++I +IIQFM+L +Y LSY+P+ R +    C   LGL  D
Sbjct:   10 QKLLDPESGQPTEGSPGPNNSFWLCPSLSYQERVIGCVTCFLLGFLLSLGSTFRLAKLAHGNPAPFAIAYTIGNILSICCTTFFVGPWKQIQTMFHSKRRYSAVVYVVFIFVTLLLCFSHHVHHRLFFVLISVIIQFMALVWYTLSYVPYGRSIAKSCCKRTLGLASD 177          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: POM62761.1 (Vesicle transport protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 131.7 bits (330), Expect = 2.600e-27
Identity = 62/149 (41.61%), Postives = 97/149 (65.10%), Query Frame = 0
Query:   59 WWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIM-IIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHDGSL 207
            W CPSL++Q RI GC+ CF+LG +L +GS FR  KL+ G+P PFA+ Y++GN++S+  + F  GP+ Q ++MFH  R     VYV+ + LTL + FS+      L V++ +++QF++L +Y LSY+P+ R +    C   LGL +D  +
Sbjct:   31 WLCPSLSYQERIIGCVTCFMLGFLLSLGSTFRLAKLVHGNPAPFAIAYSIGNILSICCTTFFVGPWKQVQTMFHSKRRYSAIVYVVFMFLTLLLCFSNHIHHRMLFVLLSVLVQFLALVWYTLSYVPYGRSIALSCCKRALGLANDDDM 179          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_008911921.1 (hypothetical protein PPTG_15463 [Phytophthora parasitica INRA-310] >ETI37300.1 hypothetical protein F443_16695 [Phytophthora parasitica P1569] >ETK77520.1 hypothetical protein L915_16224 [Phytophthora parasitica] >ETL30962.1 hypothetical protein L916_16118 [Phytophthora parasitica] >ETL84217.1 hypothetical protein L917_15921 [Phytophthora parasitica] >ETM37403.1 hypothetical protein L914_16037 [Phytophthora parasitica] >ETN02706.1 hypothetical protein PPTG_15463 [Phytophthora parasitica INRA-310] >ETO66043.1 hypothetical protein F444_16703 [Phytophthora parasitica P1976] >ETP07144.1 hypothetical protein F441_16532 [Phytophthora parasitica CJ01A1] >ETP35245.1 hypothetical protein F442_16524 [Phytophthora parasitica P10297])

HSP 1 Score: 131.0 bits (328), Expect = 4.400e-27
Identity = 62/146 (42.47%), Postives = 95/146 (65.07%), Query Frame = 0
Query:   59 WWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFS-DVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHD 204
            W CPSL++Q R+ GC+ CF+LG +L +GS FR  KL+ G+P PFA+ YT+GN++S+  + F  GP+ Q ++MFH  R     VYV+ + +TL + FS  +  +   ++I ++IQFM+L +Y LSY+P+ R +    C   LGL  D
Sbjct:   32 WLCPSLSYQERVIGCVTCFLLGFLLSLGSTFRLAKLVHGNPAPFAIAYTIGNILSIGCTTFFVGPWKQVQTMFHSKRRYSAVVYVVFIFVTLLLCFSHHIHHRVFFVLISVLIQFMALVWYTLSYVPYGRSIARSCCKRALGLASD 177          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_009528041.1 (hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae] >EGZ18983.1 hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae])

HSP 1 Score: 129.4 bits (324), Expect = 1.300e-26
Identity = 62/146 (42.47%), Postives = 94/146 (64.38%), Query Frame = 0
Query:   59 WWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIM-IIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHD 204
            W CPSL++Q R+ GC+ CF+LG +L +GS FR  KL+ G+P PFA+ YT+GN++S+  + F  GP+ Q ++MFH  R     VYV+ + +TL + FS       LLV++ +I+QF++L +Y LSY+P+ R +    C    GL  D
Sbjct:   36 WLCPSLSYQERVIGCVTCFMLGFVLSLGSTFRLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFVGPWKQVQTMFHSKRRYSALVYVVFIFVTLLLCFSPHIHHRMLLVLLSVIVQFLALVWYTLSYVPYGRSIALSCCKRVCGLATD 181          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: XP_012200322.1 (hypothetical protein SPRG_20096 [Saprolegnia parasitica CBS 223.65] >KDO28990.1 hypothetical protein SPRG_20096 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.9 bits (315), Expect = 1.400e-25
Identity = 67/140 (47.86%), Postives = 96/140 (68.57%), Query Frame = 0
Query:   54 EEDMCWWCPS--LTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFS-DVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMV 191
            ++D    CPS  L+++ R+FGCL CF+LG++L +GS  R  +L+ G P PFA+ YTLGN++SL  + F  GP AQ KSMFH  R +  A YV+ + +TLA+ FS  VP +  L++I ++IQF +L +Y LSYIP+AR  V
Sbjct:   25 QQDEALSCPSLNLSYKERLFGCLLCFLLGMVLSLGSTVRLAQLVRGRPAPFAICYTLGNVLSLCCTMFFVGPVAQCKSMFHAKRRVSAATYVVFIGVTLALCFSPHVPHRAGLVLISVLIQFGALWWYTLSYIPYARAAV 164          
BLAST of NO06G04050 vs. NCBI_GenBank
Match: GAX99422.1 (Hypothetical protein PINS_007262 [Pythium insidiosum])

HSP 1 Score: 125.6 bits (314), Expect = 1.900e-25
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 0
Query:   61 CPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFS-DVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHDGSL 207
            CPSL++Q R+ G L CF+LG +L  GS FR  KL+ G+PGPFA+ YT+GNL+SL  S F  GP  Q ++MF   R     +Y   +V+TL + F+ D+P +  L++I ++ QF +L +Y LSYIP+ RQMV        G+  D  L
Sbjct:   31 CPSLSYQERVIGFLTCFLLGFLLSFGSTFRLAKLVHGNPGPFAIAYTIGNLLSLGSSMFFVGPCKQVETMFRKKRRGSAIIYXSFIVVTLVLCFARDMPHRFGLVMISVLCQFAALVWYTLSYIPYGRQMVMSCFKRMCGMATDDDL 177          
The following BLAST results are available for this feature:
BLAST of NO06G04050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855868.11.500e-8375.36vesicle transport protein [Nannochloropsis gaditan... [more]
XP_009038786.13.700e-3445.51hypothetical protein AURANDRAFT_29003 [Aureococcus... [more]
CBN78912.17.300e-3043.56conserved unknown protein [Ectocarpus siliculosus][more]
POM70981.18.900e-2842.28Vesicle transport protein [Phytophthora palmivora ... [more]
XP_002997870.12.600e-2740.48conserved hypothetical protein [Phytophthora infes... [more]
POM62761.12.600e-2741.61Vesicle transport protein [Phytophthora palmivora ... [more]
XP_008911921.14.400e-2742.47hypothetical protein PPTG_15463 [Phytophthora para... [more]
XP_009528041.11.300e-2642.47hypothetical protein PHYSODRAFT_255591 [Phytophtho... [more]
XP_012200322.11.400e-2547.86hypothetical protein SPRG_20096 [Saprolegnia paras... [more]
GAX99422.11.900e-2544.22Hypothetical protein PINS_007262 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04050.1NO06G04050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04050.1NO06G04050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04050 ID=NO06G04050|Name=NO06G04050|organism=Nannochloropsis oceanica|type=gene|length=624bp
ATGAACCTAGAAGCTGGCCTAAATCCTGGCCGTGGTGCCTCCCACTCTTC
CACTTCCTCCGCCCAAGCCGCCTTCGCCTCCTCGTCTCCTTCCTTCATGG
ACTCGGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATGGTGT
GAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTTGGCA
ACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATCCTCG
AGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCCCGGG
CCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAGGGTC
GTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCATCCGA
CTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGACCCTC
GCAGTTGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGATCAT
GATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTACATCC
CATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGGGCTG
GGGCATGATGGGTCATTGGGATGA
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protein sequence of NO06G04050.1

>NO06G04050.1-protein ID=NO06G04050.1-protein|Name=NO06G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MNLEAGLNPGRGASHSSTSSAQAAFASSSPSFMDSARRLLGVEARPKTWC
EQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPG
PFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTL
AVAFSDVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGL
GHDGSLG*
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Synonyms
Publications