NO06G04050.1, NO06G04050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04050.1
Unique NameNO06G04050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr6:1127489..1128112 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1127489..1128112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04050.1 vs.
Match: XP_005855868.1 (vesicle transport protein [Nannochloropsis gaditana CCMP526]; EKU20493.1 vesicle transport protein [Nannochloropsis gaditana CCMP526]; EWM26400.1 vesicle transport protein [Nannochloropsis gaditana])

HSP 1 Score: 336.3 bits (861), Expect = 6.900e-89
Identity = 166/208 (79.81%), Postives = 187/208 (89.90%), Query Frame = 0 
Query:    1 MNLEAGLNPGRGASHSSTSSAQAAFASSSPS-FMDSARRLLGVEARPKTWCEQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPGPFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTLAVAFSDVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGLGHDGSLG 208
            MNLE+GL PG   + SS+SS  AAFA+SS S FMDSARRLLGVEARPKT+CE++EEDMCWWCP+LTWQ R+FGCLCCF++G+ILE GSFFRFTKLLTG P PFAVMYT+GNLISLAGSCFLSGPF+Q KSMFHPTRA+CT+VYVLTLV TL +AFSDVPGQG LLV+MII+QF+SL YY+LSYIPFARQMVWQTCGSCLGLG  GS G
Sbjct:    1 MNLESGLGPG---ASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205
The following BLAST results are available for this feature:
BLAST of NO06G04050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855868.16.900e-8979.81vesicle transport protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04050NO06G04050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04050.1NO06G04050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04050.1.cds1NO06G04050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04050.1 ID=NO06G04050.1|Name=NO06G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGAACCTAGAAGCTGGCCTAAATCCTGGCCGTGGTGCCTCCCACTCTTC
CACTTCCTCCGCCCAAGCCGCCTTCGCCTCCTCGTCTCCTTCCTTCATGG
ACTCGGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATGGTGT
GAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTTGGCA
ACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATCCTCG
AGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCCCGGG
CCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAGGGTC
GTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCATCCGA
CTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGACCCTC
GCAGTTGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGATCAT
GATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTACATCC
CATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGGGCTG
GGGCATGATGGGTCATTGGGATGA
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protein sequence of NO06G04050.1

>NO06G04050.1-protein ID=NO06G04050.1-protein|Name=NO06G04050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MNLEAGLNPGRGASHSSTSSAQAAFASSSPSFMDSARRLLGVEARPKTWC
EQMEEDMCWWCPSLTWQHRIFGCLCCFVLGLILEVGSFFRFTKLLTGSPG
PFAVMYTLGNLISLAGSCFLSGPFAQAKSMFHPTRALCTAVYVLTLVLTL
AVAFSDVPGQGALLVIMIIIQFMSLCYYVLSYIPFARQMVWQTCGSCLGL
GHDGSLG*
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mRNA from alignment at chr6:1127489..1128112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04050.1 ID=NO06G04050.1|Name=NO06G04050.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp|location=Sequence derived from alignment at chr6:1127489..1128112- (Nannochloropsis oceanica)
ATGAACCTAGAAGCTGGCCTAAATCCTGGCCGTGGTGCCTCCCACTCTTC
CACTTCCTCCGCCCAAGCCGCCTTCGCCTCCTCGTCTCCTTCCTTCATGG
ACTCGGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATGGTGT
GAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTTGGCA
ACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATCCTCG
AGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCCCGGG
CCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAGGGTC
GTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCATCCGA
CTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGACCCTC
GCAGTTGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGATCAT
GATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTACATCC
CATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGGGCTG
GGGCATGATGGGTCATTGGGATGA
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Coding sequence (CDS) from alignment at chr6:1127489..1128112-

>NO06G04050.1 ID=NO06G04050.1|Name=NO06G04050.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr6:1127489..1128112- (Nannochloropsis oceanica)
ATGAACCTAGAAGCTGGCCTAAATCCTGGCCGTGGTGCCTCCCACTCTTC
CACTTCCTCCGCCCAAGCCGCCTTCGCCTCCTCGTCTCCTTCCTTCATGG
ACTCGGCCCGCCGCCTCCTGGGAGTAGAAGCCCGACCCAAGACATGGTGT
GAACAAATGGAAGAAGACATGTGCTGGTGGTGTCCTTCCTTGACTTGGCA
ACATCGCATTTTTGGCTGCCTCTGCTGTTTCGTTCTGGGTCTCATCCTCG
AGGTGGGCTCGTTCTTCCGGTTCACCAAGCTCCTGACGGGCAGTCCCGGG
CCTTTCGCCGTCATGTACACCCTAGGAAATCTCATTTCCCTCGCAGGGTC
GTGCTTCTTATCTGGGCCATTTGCACAGGCGAAAAGCATGTTCCATCCGA
CTCGGGCCCTGTGTACGGCGGTGTATGTGCTGACGTTGGTGTTGACCCTC
GCAGTTGCCTTCTCGGATGTACCAGGTCAGGGAGCCTTGTTAGTGATCAT
GATCATTATCCAGTTTATGTCCTTGTGTTACTATGTTTTATCGTACATCC
CATTCGCGAGGCAGATGGTGTGGCAGACGTGCGGGAGCTGCTTGGGGCTG
GGGCATGATGGGTCATTGGGATGA
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Synonyms
Publications