NO06G03940, NO06G03940 (gene) Nannochloropsis oceanica

Overview
NameNO06G03940
Unique NameNO06G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr6:1102712..1103863 -

Link to JBrowse

Properties
Property NameValue
Description40s ribosomal protein s3-3
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1102712..1103863 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009019KH_prok-type
IPR036419Ribosomal_S3_C_sf
IPR004044KH_dom_type_2
IPR001351Ribosomal_S3_C
Homology
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_005855867.1 (small subunit ribosomal protein S3e [Nannochloropsis gaditana CCMP526] >EKU20492.1 small subunit ribosomal protein S3e [Nannochloropsis gaditana CCMP526] >EWM26358.1 40s ribosomal protein s3-3 [Nannochloropsis gaditana])

HSP 1 Score: 445.3 bits (1144), Expect = 1.200e-121
Identity = 232/244 (95.08%), Postives = 237/244 (97.13%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVAMPYGGMAGGMAPAPMATY 245
            MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIII ATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEV+VSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDP GKIGPKAKLSDVV V EPKEE++LP+PEPV M YGGM GGMAPAPMA+Y
Sbjct:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIISATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVIVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPAGKIGPKAKLSDVVNVLEPKEEIELPVPEPVTMSYGGM-GGMAPAPMASY 243
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_009038551.1 (hypothetical protein AURANDRAFT_60177 [Aureococcus anophagefferens] >EGB06804.1 hypothetical protein AURANDRAFT_60177 [Aureococcus anophagefferens])

HSP 1 Score: 359.8 bits (922), Expect = 6.900e-96
Identity = 183/217 (84.33%), Postives = 199/217 (91.71%), Query Frame = 0 
Query:    5 ISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPM 222
            ISKKRKF+ADG+FYAELNELLTRELAEDGYAGVEVRV PLRTEIIIRATRTQNVLGEKGQRIRELT+V+QKRF+F DG VEL+AE+VA+RGLCAQAQAESLKYKLLGGLAVRRACYGV+RFVME GAKG EVVVSGKLRAQRAK+MKF DGYMIK+G +KREYVD AVRHVLMRQGVLGVKV IMLPHD  GK GPK  L+DVV + EPKEE  +P+
Sbjct:    4 ISKKRKFVADGLFYAELNELLTRELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFHFQDGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRACYGVVRFVMESGAKGVEVVVSGKLRAQRAKAMKFTDGYMIKTGHSKREYVDSAVRHVLMRQGVLGVKVSIMLPHDASGKTGPKNTLADVVTILEPKEEAPMPV 220
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_008865802.1 (40S ribosomal protein S3 [Aphanomyces invadans] >ETW06025.1 40S ribosomal protein S3 [Aphanomyces invadans])

HSP 1 Score: 353.6 bits (906), Expect = 4.900e-94
Identity = 179/226 (79.20%), Postives = 201/226 (88.94%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVA 227
            M  NISKKRKF+ADGVF+AELNELL RELAEDGYAGVEVRV PLRTE+IIRAT+TQ VLGEKGQRIRELT+V+QKRFNF DG VEL+AE+VA+RGLCAQAQAESLKYKLLGGLAVRRA  GVLRFV+E GAKG EV+VSGKLRAQRAK+MKF++G+M+K+G A +EYVD AVRHVLMRQGVLGVKV IMLPHDP G++GPK  L DVV + EPKEE+  P  EPVA
Sbjct:    1 MALNISKKRKFVADGVFFAELNELLQRELAEDGYAGVEVRVTPLRTEVIIRATKTQEVLGEKGQRIRELTSVVQKRFNFADGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRAAMGVLRFVLEAGAKGCEVIVSGKLRAQRAKAMKFKEGFMVKTGDANKEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGRMGPKRNLDDVVTILEPKEEVYRPYVEPVA 226
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: GAY00184.1 (40S ribosomal protein S3-3 [Pythium insidiosum])

HSP 1 Score: 353.6 bits (906), Expect = 4.900e-94
Identity = 183/229 (79.91%), Postives = 199/229 (86.90%), Query Frame = 0 
Query:    2 TTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPM--PEPVAMP 229
            T NISKKRKF+ADGVFYAELNELL REL  DGYAGVEVRV P+RTEIIIRATRTQ VLGEKGQRIR LT+V+QKRFNFPDG VEL+AE+VA+RGLC+QAQAESLKY+LLGGLAVRRACY VLRFVME GAKG EV+VSGKLRAQRAKSMKF++GYM+K+G A  EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKEE+  P   P PVA P
Sbjct:    3 TANISKKRKFVADGVFYAELNELLQRELYGDGYAGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVLRFVMEAGAKGCEVIVSGKLRAQRAKSMKFKEGYMVKTGNAGMEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRNLDDVVTILEPKEEVYRPYVEPTPVAAP 231
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_008898328.1 (40S ribosomal protein [Phytophthora parasitica INRA-310] >ETI31594.1 40S ribosomal protein [Phytophthora parasitica P1569] >ETK71971.1 40S ribosomal protein [Phytophthora parasitica] >ETL25398.1 40S ribosomal protein [Phytophthora parasitica] >ETL78625.1 40S ribosomal protein [Phytophthora parasitica] >ETM31886.1 40S ribosomal protein [Phytophthora parasitica] >ETN15930.1 40S ribosomal protein [Phytophthora parasitica INRA-310] >ETO60312.1 40S ribosomal protein [Phytophthora parasitica P1976] >ETP01408.1 40S ribosomal protein [Phytophthora parasitica CJ01A1] >ETP29579.1 40S ribosomal protein [Phytophthora parasitica P10297])

HSP 1 Score: 351.7 bits (901), Expect = 1.900e-93
Identity = 182/241 (75.52%), Postives = 203/241 (84.23%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVAMPYGGMAGGMAPAPM 242
            M  NISKKRKF+ADGVFYAELNELL REL  DGY+GVEVRV P+RTEIIIRATRTQ VLGEKGQRIR LT+V+QKRFNFPDG VEL+AE+VA+RGLC+QAQAESLKY+LLGGLAVRRACY V+RFVME GAKG +V+VSGKLRAQRAK+MKF +GYM+K+G A +EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKEE+  P  EP A      A   APAP+
Sbjct:    1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVVRFVMEAGAKGVQVIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVHRPYVEPTAPVVPAAA---APAPV 238
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: OWY96054.1 (40S ribosomal protein S3-3 [Phytophthora megakarya])

HSP 1 Score: 351.3 bits (900), Expect = 2.400e-93
Identity = 181/241 (75.10%), Postives = 203/241 (84.23%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVAMPYGGMAGGMAPAPM 242
            M  NISKKRKF+ADGVFYAELNELL REL  DGY+GVEVRV P+RTEIIIRATRTQ VLGEKGQRIR LT+V+QKRFNFPDG VEL+AE+VA+RGLC+QAQAESLKY+LLGGLAVRRACY V+RFVME GAKG +V+VSGKLRAQRAK+MKF +GYM+K+G A +EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKEE+  P  EP A     +    APAP+
Sbjct:    1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVVRFVMEAGAKGVQVIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVHRPYVEPTA----PVVPAAAPAPV 237
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: CCA18322.1 (40S ribosomal protein S33 putative [Albugo laibachii Nc14] >CCA18405.1 40S ribosomal protein S33 putative [Albugo laibachii Nc14])

HSP 1 Score: 350.9 bits (899), Expect = 3.200e-93
Identity = 179/229 (78.17%), Postives = 202/229 (88.21%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDL--PMPEPVAM 228
            M TNISKKRKF+ADGVFYAELNELL REL  DGY+GVEVRV PLRTEIIIRATRTQ VLGEKGQRIRELT+V+QKRFNF +G VEL+AE++A+RGLC+QAQAESLKY+LL GLAVRRACY VLRFVME GAKG EV+VSGKLRAQRAKSMKF++GYM+K+G A++EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKE++ L  P P+P +M
Sbjct:    1 MATNISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPLRTEIIIRATRTQEVLGEKGQRIRELTSVVQKRFNFAEGSVELYAERIANRGLCSQAQAESLKYRLLEGLAVRRACYSVLRFVMEAGAKGCEVIVSGKLRAQRAKSMKFKEGYMVKTGNARQEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRNLDDVVTILEPKEDIPLVYPAPQPQSM 229
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_002902999.1 (40S ribosomal protein S3-3 [Phytophthora infestans T30-4] >EEY56169.1 40S ribosomal protein S3-3 [Phytophthora infestans T30-4])

HSP 1 Score: 350.9 bits (899), Expect = 3.200e-93
Identity = 177/226 (78.32%), Postives = 197/226 (87.17%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVA 227
            M  NISKKRKF+ADGVFYAELNELL REL  DGY+GVEVRV P+RTEIIIRATRTQ VLGEKGQRIR LT+V+QKRFNFPDG VEL+AE+VA+RGLC+QAQAESLKY+LLGGLAVRRACY V+RFVME GAKG +V+VSGKLRAQRAK+MKF +GYM+K+G A +EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKEE+  P  EP A
Sbjct:    1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVVRFVMEAGAKGVQVIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVHRPYVEPTA 226
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_009533410.1 (hypothetical protein PHYSODRAFT_287105 [Phytophthora sojae] >EGZ10665.1 hypothetical protein PHYSODRAFT_287105 [Phytophthora sojae])

HSP 1 Score: 350.1 bits (897), Expect = 5.400e-93
Identity = 177/226 (78.32%), Postives = 197/226 (87.17%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMPEPVA 227
            M  NISKKRKF+ADGVFYAELNELL REL  DGY+GVEVRV P+RTEIIIRATRTQ VLGEKGQRIR LT+V+QKRFNFPDG VEL+AE+VA+RGLC+QAQAESLKY+LLGGLAVRRACY V+RFVME GAKG +V+VSGKLRAQRAK+MKF +GYM+K+G A +EYVD AVRHVLMRQGVLGVKV IMLPHDP GK GPK  L DVV + EPKEE+  P  EP A
Sbjct:    1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLGEKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACYSVVRFVMEAGAKGVQVIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAVRHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVYRPYVEPTA 226
[Close]
BLAST of NO06G03940 vs. NCBI_GenBank
Match: XP_002516123.1 (PREDICTED: 40S ribosomal protein S3-3 [Ricinus communis] >EEF46125.1 40S ribosomal protein S3, putative [Ricinus communis])

HSP 1 Score: 349.7 bits (896), Expect = 7.100e-93
Identity = 175/222 (78.83%), Postives = 198/222 (89.19%), Query Frame = 0 
Query:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIIRATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGPKAKLSDVVVVHEPKEELDLPMP 223
            M+T ISKKRKF+ADGVFYAELNE+LTRELAEDGY+GVEVRV P+RTEIIIRATRTQNVLGEKG+RIRELT+V+QKRFNFPD  VEL+AEKV +RGLCA AQAESL+YKLLGGLAVRRACYGVLRF+ME GAKG EV+VSGKLRAQRAKSMKF+DGYMI SGQ  +EY+D AVRHVL+RQGVLG+KVKIML  DP+GK+GP   L D+V +H PKEE +   P
Sbjct:    1 MSTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPRGKLGPMTPLPDLVTIHSPKEEEEYNTP 222
The following BLAST results are available for this feature:
BLAST of NO06G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855867.11.200e-12195.08small subunit ribosomal protein S3e [Nannochlorops... [more]
XP_009038551.16.900e-9684.33hypothetical protein AURANDRAFT_60177 [Aureococcus... [more]
XP_008865802.14.900e-9479.2040S ribosomal protein S3 [Aphanomyces invadans] >E... [more]
GAY00184.14.900e-9479.9140S ribosomal protein S3-3 [Pythium insidiosum][more]
XP_008898328.11.900e-9375.5240S ribosomal protein [Phytophthora parasitica INR... [more]
OWY96054.12.400e-9375.1040S ribosomal protein S3-3 [Phytophthora megakarya... [more]
CCA18322.13.200e-9378.1740S ribosomal protein S33 putative [Albugo laibach... [more]
XP_002902999.13.200e-9378.3240S ribosomal protein S3-3 [Phytophthora infestans... [more]
XP_009533410.15.400e-9378.32hypothetical protein PHYSODRAFT_287105 [Phytophtho... [more]
XP_002516123.17.100e-9378.83PREDICTED: 40S ribosomal protein S3-3 [Ricinus com... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000080NSK000080Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03940.1NO06G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623760gene_6726Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g39gene4140Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03940.1NO06G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03940 ID=NO06G03940|Name=NO06G03940|organism=Nannochloropsis oceanica|type=gene|length=1152bp
ATGACGACCAACATCTCCAAGAAGCGCAAGTTCATTGCGGATGGTGTGTT
CTATGCCGAGCTGAACGAGgtaagtgcggggaagtgcgcgcgtcgaggaa
aggaaggggagagctgaagcaagggtagttaatcgagcgggaggcaaaaa
gcatgctgcaacgacctggtctcctgaacgtgaagtgctcaccttgtcgt
tatggcaggatcaggacgtatgtgtggaggatatgtgtggtgggacgagc
tgtggtgggagattttggcagacgtggattgggaatcgaggatggcttca
agatgacggagcaacactgtgaaagcacccgaggaggaaggataaaaagc
tgggagggacagaggactgttagaagcgaagaggagttgtatcgcgagcg
aaatgtattatcagtccagacattcatcttttctgaccctcccttccttg
gtatttccccataccatcccctcatccaccccacagCTCCTGACCCGCGA
GCTGGCCGAGGACGGTTACGCCGGTGTGGAAGTCCGCGTGGTACCCCTGC
GCACGGAGATCATTATTCGTGCCACCCGGACGCAAAACGTGCTTGGCGAG
AAGGGCCAACGCATTCGCGAGCTGACCACCGTCATCCAAAAGCGATTCAA
CTTCCCCGACGGTGTGGTGGAGCTTTTCGCCGAGAAGGTGGCTTCGCGTG
GGTTGTGCGCGCAGGCGCAGGCCGAGTCCCTGAAGTACAAGCTCTTGGGC
GGCCTGGCCGTGCGTCGTGCCTGTTATGGTGTCCTCCGCTTCGTGATGGA
GCAAGGCGCCAAGGGGGCTGAGGTTGTTGTCTCTGGTAAGCTCCGCGCGC
AGCGTGCCAAGAGCATGAAGTTCCAAGACGGGTACATGATCAAGTCCGGG
CAGGCCAAGCGGGAGTACGTGGACTACGCCGTGCGACACGTGCTGATGCG
CCAGGGAGTGCTGGGTGTCAAGGTCAAGATCATGCTTCCCCACGACCCTC
AAGGGAAGATCGGCCCGAAGGCCAAGCTTTCGGATGTGGTGGTGGTGCAC
GAGCCGAAGGAGGAGTTGGATTTGCCCATGCCGGAGCCGGTGGCGATGCC
CTACGGAGGGATGGCAGGAGGGATGGCGCCGGCTCCCATGGCCACCTATT
AA
back to top

protein sequence of NO06G03940.1

>NO06G03940.1-protein ID=NO06G03940.1-protein|Name=NO06G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIII
RATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQA
QAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVVVSGKLRAQRAKSM
KFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPQGKIGP
KAKLSDVVVVHEPKEELDLPMPEPVAMPYGGMAGGMAPAPMATY*
back to top
Synonyms
Publications