NO06G03800, NO06G03800 (gene) Nannochloropsis oceanica

Overview
NameNO06G03800
Unique NameNO06G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6257
Alignment locationchr6:1050997..1057253 +

Link to JBrowse

Properties
Property NameValue
DescriptionMei2-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1050997..1057253 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR007201Rrm_2
Homology
BLAST of NO06G03800 vs. NCBI_GenBank
Match: EWM26384.1 (mei2-like protein [Nannochloropsis gaditana] >EWM26385.1 mei2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 585.9 bits (1509), Expect = 3.100e-163
Identity = 441/835 (52.81%), Postives = 475/835 (56.89%), Query Frame = 0
Query:  542 ALFETQAGIELCHFLLETESRALTLFNVEQVSAELLMRACENIGSLAYLRMDFRACRGVVFLAYQDLRASLRAFHTLPRDLAALVEKPAPTSSXXXXXXXXXXXXPRPSSPLHPLPSVHYSIMLNAATTPRDGILLVREC-PSSLPXXXXXXXXLTESDVQAVFAAYGQLKNVHRRMLLSSLPHSSASYSSSSPHYTTVTPPTGLPSLPLPPGNTLAFLVEYYDVQDAKTAAFELSATTPWGNSIIVDEAERSEKERQLGQQLLLTLHRWREEQRAAQLSAALSSSLGVAATGGEGAGDEVREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSC----------------PGVT----------------------------------------------------XXXXXXKXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRGPAYGRGGVGES----------QSMTPT-IGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-------RVSPNAGGQYPRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXMGETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTPTTPTSYVMGMAGLNLGGMGMM 1290
            +LFET  G+ELCHFLLETESRAL LFNVE VSAE L R CEN+G+LAYLRMDFRA RGVVFLAY DLRASLRAFH LPR+L A+ +                    RP SPL P PSVHYSIMLNAATTPRDGILLVRE  PSS P         TESDVQAVF++YGQLKNVHRR+LLSS P   +  ++SS  Y TVTPP+G  SLPLPPGN LAFLVE+YDVQDAK AA EL++TTPWG S+ V+EAER+ KERQLGQQLLLTLHRWREE RAAQLSAAL S L     G EG G E  EG                                             S                 PG T                                                            A            XXXXXXXXXXXXXXXXXXXXXXXXXXX  A +  A G GG G S          QS TPT +G+              XX                                 S                                              G       R+SPN G QY R M           XXXXXXXXXXXXXXXX   TEFHLDVERILMG+DRRTTIMVRNVPNKYSQQLLLNEIN AHKGKYDFFYLPIDFKNKCNVGYAFINFI+PK+I+PFFKEFNGQRW NFNSEKVCAISYARIQG+QSMISRFSNSSLMEKDGEYRPLLF+SSGPDRGKPEPFP S KH+GR+SG+NTPTTPT   +GMAG  LGGMGMM
Sbjct:  473 SLFETLVGVELCHFLLETESRALILFNVEHVSAEHLTRVCENLGTLAYLRMDFRANRGVVFLAYHDLRASLRAFHILPRELGAMSQYDTALCPSG-----------RPPSPLAPTPSVHYSIMLNAATTPRDGILLVREASPSSSP---SHSLPFTESDVQAVFSSYGQLKNVHRRILLSSSP---SXXNTSS--YHTVTPPSG--SLPLPPGNGLAFLVEFYDVQDAKAAASELASTTPWGASVQVEEAERAAKERQLGQQLLLTLHRWREEGRAAQLSAALVSPLSGTGGGREGLGGE--EGLETLLPSSASSIGTLYTGNASSHGHGSFYGGSPLGSGATTAGTTLSSSLSPSHLLFLQHSAAYPGHTPSPSSAGFMMHGGERGTSVGKNKGAQSSNGNNVDRNNTSDVGHIGKSACENHYNGYNNHSASANFAGTMHNNIXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAVQNLASGAGGAGRSSVYGHSPSGTQSATPTSVGYGSSSPFGGMHSSASXXSTASALGVYLPGMQHHHQQLAMSQMQLEGVPPSSSLDPHGMSSGGMNGNDAATAAAAAAFKGLWVSPPHNMCSPPLMPGMGPSVHGKNRLSPNTGAQYSRIM-TATASTGRYPXXXXXXXXXXXXXXXXXXXTEFHLDVERILMGMDRRTTIMVRNVPNKYSQQLLLNEINAAHKGKYDFFYLPIDFKNKCNVGYAFINFIEPKAIVPFFKEFNGQRWRNFNSEKVCAISYARIQGKQSMISRFSNSSLMEKDGEYRPLLFYSSGPDRGKPEPFPSSLKHHGRKSGTNTPTTPT--FLGMAG--LGGMGMM 1279          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: CBJ29932.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 266.9 bits (681), Expect = 3.200e-67
Identity = 254/720 (35.28%), Postives = 327/720 (45.42%), Query Frame = 0
Query:  542 ALFETQAGIELCHFLLETESRALTLFNVEQVSAELLMRACENIGSLAYLRMDFRACRGVVFLAYQDLRASLRAFHTLPRDLAA--LVEKPAPTSSXXXXXXXXXXXXPRPSSPLHPLPSVHYSIMLNAATTPRDGILLVRECPSSLPXXXXXXXXLTESDVQAVFAAYGQLKNVHRRMLLSSLPHSSASYSSSSPHYTTVTPPTGLPSLPLPPGNTLAFLVEYYDVQDAKTAAFELSATTPWGNSIIVDEAERSEKERQLGQQLLLTLHRWREEQRAAQLSAALSSSLGVAATGGEGAGDEVREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCPGVTXXXXXXKXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRGPAYGRGGVGESQSMTPTIGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRVSPNAGGQYPRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXMGETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHY 1260
            A+    AG EL  FL E  SRAL L+NVE +  + L  ACE  G L YLR + R  R V+F+AY D+R ++ A  +L  +L++  L+++                          P P+VH+SI L+A  + ++G ++  + P+           +TE++V +VF  YG L+ V +        H+  S                            +F VE+  +QDA+ AA EL+   PWG+ I V+ A RSE E+ LG++L  TL+RW  E          SSS                               XXXXXXXXXXXXXXXXXX               C G+                                                      G   G GG+G     T  +                                                                          XXXXXXXXXXXXXXXXXXXXXXXX   SP++ G                                  G  EF LD++++  G+D+RTTIMVRN+PNKY+Q +LL EI+++++G YDFFYLPIDFKNKCNVGYAFINF+D + I+PFF+EFN QRW NFNSEKVCAISYARIQG+ SMISRF NSSLMEKDGEYRPL+FHS+GP+RG+PEPFP SSK Y
Sbjct:  280 AVLNAPAGAELMEFLTERPSRALVLWNVEAIGEDELRAACEGHGPLYYLRAEHRRKR-VIFVAYYDVRDAVNAHRSLGAELSSNYLMDEHG----------------------ARPRPAVHFSIELHAGFSYKEGSVVAHDLPAQ----------VTEAEVGSVFQVYGDLRRVAQH-------HAHPS----------------------------SFSVEFCSIQDARVAAQELTVRNPWGHGITVEPAVRSEAEKALGKKLHATLNRWTAESTQVYEDRMRSSS-------------------------------XXXXXXXXXXXXXXXXXXPERTPTRMVEASRPECGGMRGSPPLRGMP--------------------------------------------GGCAGAGGLGYKDVRTRQMS---------------------------------------------------------------LDEARLQHGNXXXXXXXXXXXXXXXXXXXXXXXXXXXSPHSAG----------------------------PECSGNGGHEFSLDLKKVSKGMDKRTTIMVRNIPNKYTQMMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAY 765          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: GAX95638.1 (Hypothetical protein PINS_003563 [Pythium insidiosum])

HSP 1 Score: 233.8 bits (595), Expect = 3.000e-57
Identity = 103/150 (68.67%), Postives = 129/150 (86.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKH 1259
            G  E+ L +ER++ G D+RTT+M+RN+PNKY+QQ+LL+EIN  H GKYDFFYLPIDFKNKCN+GYAFINFID +SI+ F++EF+ Q+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL+EK   YRPL+FHSSGP+RG+PEPFP    H
Sbjct:  487 GTGEYSLSIERVISGEDKRTTLMIRNIPNKYTQQMLLSEINVHHHGKYDFFYLPIDFKNKCNMGYAFINFIDAESIVSFYEEFDSQKWTNFNSEKVCAISYARLQGKQAMITRFQNSSLLEKHESYRPLVFHSSGPNRGEPEPFPSPKLH 636          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: XP_002997330.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68871.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 223.4 bits (568), Expect = 4.000e-54
Identity = 101/163 (61.96%), Postives = 130/163 (79.75%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTPTTP 1272
            G  EF + +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSGP+RGKPEPFP   +   ++   + P +P
Sbjct:  522 GTGEFSMSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAALIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGPNRGKPEPFPAPKQIVHKKQSVHLPHSP 684          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: XP_008911351.1 (hypothetical protein PPTG_16287 [Phytophthora parasitica INRA-310] >ETK78114.1 hypothetical protein L915_15802 [Phytophthora parasitica] >ETL84783.1 hypothetical protein L917_15504 [Phytophthora parasitica] >ETN03235.1 hypothetical protein PPTG_16287 [Phytophthora parasitica INRA-310] >KUF92569.1 hypothetical protein AM588_10004067 [Phytophthora nicotianae] >KUG01493.1 MEI2 3 protein [Phytophthora nicotianae])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-53
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  547 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 706          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: ETL31544.1 (hypothetical protein L916_15698 [Phytophthora parasitica] >ETP07794.1 hypothetical protein F441_16077 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-53
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  546 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 705          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: ETM37941.1 (hypothetical protein L914_15644 [Phytophthora parasitica])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-53
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  549 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 708          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: ETO66666.1 (hypothetical protein F444_16246 [Phytophthora parasitica P1976])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-53
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  548 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 707          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: ETP35825.1 (hypothetical protein F442_16105 [Phytophthora parasitica P10297])

HSP 1 Score: 219.9 bits (559), Expect = 4.500e-53
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+G YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  546 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 705          
BLAST of NO06G03800 vs. NCBI_GenBank
Match: ETI37908.1 (hypothetical protein F443_16248 [Phytophthora parasitica P1569])

HSP 1 Score: 217.2 bits (552), Expect = 2.900e-52
Identity = 99/160 (61.88%), Postives = 127/160 (79.38%), Query Frame = 0
Query: 1109 GETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINTAHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFNSEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPEPFPLSSKHYGRRSGSNTP 1269
            G  EF L +E++  G D+RTT+M+RN+PNKY+QQ+LL+EIN  H+  YDFFYLPIDFKNKCN+GYAFINFI+   I  F KEF+GQ+W NFNSEKVCAISYAR+QG+Q+MI+RF NSSL++K   YRPL+F SSG +RGKPEPFP   +   ++   ++P
Sbjct:  547 GTGEFSLSIEKVASGEDKRTTLMIRNIPNKYTQQMLLSEINRNHRDNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHKEFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLDKHESYRPLVFGSSGSNRGKPEPFPAPKQIVHKKQSVHSP 706          
The following BLAST results are available for this feature:
BLAST of NO06G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26384.13.100e-16352.81mei2-like protein [Nannochloropsis gaditana] >EWM2... [more]
CBJ29932.13.200e-6735.28conserved unknown protein [Ectocarpus siliculosus][more]
GAX95638.13.000e-5768.67Hypothetical protein PINS_003563 [Pythium insidios... [more]
XP_002997330.14.000e-5461.96conserved hypothetical protein [Phytophthora infes... [more]
XP_008911351.14.500e-5362.50hypothetical protein PPTG_16287 [Phytophthora para... [more]
ETL31544.14.500e-5362.50hypothetical protein L916_15698 [Phytophthora para... [more]
ETM37941.14.500e-5362.50hypothetical protein L914_15644 [Phytophthora para... [more]
ETO66666.14.500e-5362.50hypothetical protein F444_16246 [Phytophthora para... [more]
ETP35825.14.500e-5362.50hypothetical protein F442_16105 [Phytophthora para... [more]
ETI37908.12.900e-5261.88hypothetical protein F443_16248 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000097NSK000097Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03800.1NO06G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651776gene_6711Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g25gene4152Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03800.1NO06G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03800 ID=NO06G03800|Name=NO06G03800|organism=Nannochloropsis oceanica|type=gene|length=6257bp
GCAGGACGTTGGGGTGTGCCGCTGCCTCCTGCTTGAGCTTTCTGTACACC
AGGTGTCAACAGTCCCTTACCCACGTGTAGACTTTGTGTGTGCTAGTGGA
AGACCTGTAATATACTCTTGCCTGATTTCCCTTTCAATGTCGTGAAAGCG
GAAGCGTCTCTTGACAGCTTGTTCCTGTTCGCATGGACAAGAACAGGTTT
GGGAATCGGCCCGCTTTGTTGAATTACAGGAGTGCACACCACTTTTCTGT
CTCCAATTCCATTCACATGCACCCCTGCAAACCCGGAAGACCATGCGTGT
GCCTTTTCAAGATCAGGCTCCTTTCTTAAACGTGTATTGTCAAGGAGGCA
CTGTTATAGTGGAGCGCGGTCATGCCGTGCATCACATTTCTCCCTTGTTC
CGCCTTGATCATCTGACGCGCACAGAAGCAGCGGTGGTCCCCTAAAAACC
ACATCTTGCTCTTCACGCTCTTTCGCCACGGATTGGCTGTTGCATGGTAT
AGCCAACAACTGATACAGGAGGATGTTGCAGGCCGGGCCACCAGTCAGAT
AGTTGCTATGCGTAAACGCCTCGGCCAGGATGACCTCGATCTCATCTTCT
TCGCTCCTTTGCCTCATATCAACCCCCTCCCCCCGGTACCCTGAACTCGC
ACAGATAGCAACTAAAGCACGCCTACCTCGGTGAGAGTAGAGAAGGTGGA
GACTCGACCACACAAAAACGTGACCTCAACGCACCCTCGCAGgtatggct
tgggattagagtgttgaggttgagggagggaacggtggagggagggagcg
ggtttgaacggcgcggcgtgctcttgcacaggcattacctcggcttcaag
tggctgcacgggtgggttaaactttttaatcacatcatgccgccatcgcc
catttacggtgcctcgattttgtcaaaggggaaagggaagacggacgcga
gggagggcactcctatcctcacttccaactgattttttatgccgtcacta
attaccatcaccacaatcatgactgtaccaaccacacagCCCTGTTTCCC
CTGCTAGCAGCAGTCTTCGCGGTACACCTTCCTCCCGTGGATGCTCAGTG
AACCCCCAGGACAAACGCCCACCTCATCCTTCCTCATGTTTGGTGCCTCG
GTGTCTAAATTTGTCACGGGGGCACGCAACAGCGTCTCGGGCAGCAGCAG
TAATTCCAACAGCAGCAACCATGCTGCCGCCGCAGGAGAGACTGGGACAC
AAATGTCGAGCACCACGCCTGCGGCCTTGTCAGCTGCCTCCTGTCCGAGC
AGCAGCACCATCACAGCTGCTGTAGCTGGTGCTGCTTCCTCCTCCGTCTC
TGGAGGAGACTCACCGCGTGGGAATGGCTCAGCAACAGCATCGTTACCTT
CTCGGGGCTCCCAGAAAAATTTGGAGGAGATGATTGGGTCGAGTCTGGCC
TTCGCGATCAATAGCCTGGACCACCTGGTGCATCACCCCTCTATGGCCAT
GGCGTCTCTCGCTGGCCTCGGCGGGAGCAGCAGCAGCAACAGCAGCAGTT
GTGGCAGTGGCAGTGGCAGTGGAAGTGACAGTGACAAATGTACCAATGGA
AGCGACAACGTCACTGGGAGTAGCACCAGCACTTCAAGCAGCAGCAGCAG
CAGCAGCAGTTGCAGCAGCAGTTGCAGCAGCAGTGGTGCAGCACCAGCCC
TCCCATCTTCCACTGCAGGTACCATATCTCCTGCCGGTTCGGCCTCGGGG
GTCACCAGTGGGACGACCTCTCCCGCAGACACCACCTCGGTCTCGCCCGA
GAGCAACAACCTTCTATTTCTTCAGGCGCAAATGCACGCGCGAGCCCCGG
GCCAACATGCCCATCCACCCGTCGCTCCCTCCCACCCATCCCTAGAACCG
AGCACATACCACCTCTACCAGCTGCAGCAACAGCGCCGTCAGCAACTGGA
GCTCCTCCAGCAGCAGCAGCAGCAGCAAGAAATGGGAGCAGGAGCAGTAA
CAGCGGGGGGTCACCCTTCGGCCGCTGCCTTGTTGGCCGCCTCCTCTCAG
CAGATGGTGATCCCTGGGAACATGACGGCGCTCGCGCCCCACTTCCTCCA
GCCGCACCAACACACGCGCCCCATGCCCAACCCACATCACGCCCGGCTCC
CTGTTCCACCCCCCCTGCCACAACAACAGCAGCAGGCAGCCCTGCGATTG
CAACAGCAGCAGCAGGCAGCAGCAGCAGCGAACAGCGGCGGCAACAGCAA
CAGCTGTGCCTCTTCCAACGCAGAGAACTCCACTTCCTCCCCGGCATTCA
GCAGCAGCAACCACCTCCACCACCTCAACAATAAGATTGGCAGCAGCCAT
CAACAACAGCACCAGCACCAGCACCAGCACCACCAGCAGCAGCAACAGCA
GCAACAACAGCCGTCGGTGTGCAGCGCGGGCGGATCCTCTACCCTTAGCA
ACAACCACCCTCACCACCATCTACCCCTCCCCATCCACGCGCAGTTGCAG
CGGCAGCAGCAGCCGCAGCAGCAGCAAATCCCTCCCCCCTACCCTCACCA
GCAACAACAACAGCTGCAGCAGCAGCTTCAGTTCCTCCAGCAGTTGCAAC
TGCAGCAGCTGCATGGCACTACCAGCAAGGCACCAGAGCATGGAGGACGA
GGAGGAGGAGGCGGAGGGGGAGGAGGCGGTGGAGGCGGTGGAGGCGGCGG
AGGCAATCGCGCTGCTTTGTTCGAGACCCAAGCCGGGATAGAGCTTTGTC
ACTTTTTGCTGGAGACGGAATCTCGGGCATTGACCCTTTTCAACGTGGAG
CAAGTTTCTGCCGAGCTCTTGATGCGAGCCTGTGAGAACATCGGGTCTCT
TGCCTACCTCCGAATGGACTTTCGTGCTTGTCGAGGAGTCGTCTTTTTGG
CTTATCAGGACCTAAGGGCCTCCCTCCGTGCCTTCCACACACTCCCTCGC
GACCTCGCGGCTCTTGTGGAGAAGCCCGCCCCCACCTCTTCCTCTTCTAC
GTCCTCTCCCTCCACCTGCACCTCCAATCCCCGCCCTTCCTCCCCCCTCC
ACCCTCTCCCCTCGGTCCATTATTCCATCATGCTCAACGCTGCCACCACC
CCCCGCGACGGCATCCTCCTCGTCCGCGAATGCCCTTCCTCCCTCCCTCC
CTCCCTCCCTCTTTCACTGTCCCTCACCGAATCCGACGTCCAAGCCGTTT
TTGCCGCCTACGGACAGTTAAAGAACGTGCACCGACGCATGCTCCTTTCT
TCCCTCCCTCACTCCTCCGCTTCCTACTCCTCATCTTCTCCTCACTACAC
AACCGTCACCCCTCCCACGGGCCTTCCTTCCCTCCCTCTACCTCCTGGGA
ATACCCTGGCGTTCCTCGTCGAGTATTACGACGTGCAAGATGCGAAAACA
GCGGCTTTCGAACTCTCTGCTACCACCCCCTGGGGTAATTCCATTATTGT
AGACGAAGCAGAGAGATCAGAAAAGGAACGGCAATTAGGACAGCAGCTAT
TGCTCACCCTGCACAGATGGAGGGAGGAGCAGAGAGCGGCGCAGCTGTCG
GCGGCGCTGTCGTCTTCCTTGGGAGTGGCTGCGACGGGGGGAGAGGGAGC
AGGGGATGAAGTGAGGGAGGGAGTGGGAGGAGGGAGTACTGGTGGAGTTT
TTTATGGGGGATCGCCGCAGAGTTCTGTGTCGGGGATGACGACAGCTGGA
ACTTCCTCTTCGTCCTCCCTGAGTCCCTCACAGCTGCTGTTTTTGCAGCA
AGCAACTTCCTGTCCGGGTGTCACCTCCGCAGCGACGCTGATGAAGATGG
CCAACGGTGTGAGCAACAACAACATCATCAACAACAACAACAACAACGTC
AATAACAGCAACAACAACAACAACAACAACAACAACAACAATAACCACAA
CAACCACAACGGTGGGATCGGCAGTGCCGGCCGTGGCCCTGCCTACGGTC
GAGGGGGAGTAGGAGAGTCGCAAAGCATGACACCCACCATCGGTCACCAC
TCCTCCTCTTCCCCCTACGGAGGCAGTCATCCGTCCTCTGCCCCTTCCTC
CTCTTCGGTCGCATACCACCACCACCATCAGCAGCTACTCCAGCAGCAGC
AACAGCAGCAACAACAGCTTTACATGGATAGCATGTCTCCTATTTCCTAC
GACGGCTTGGGAGGAGGGATGTTGGGGGGAAGCACGGATGCAGCAGCAGC
CGCCGCCGCCGCCGCTGCCTTCAAGGGCATGTGGATCTCTCCAAATCACC
ACCTCGGCTCTCCCCCCCCGATGGGGGGAGGAAGGGGGAGGGTGTCACCC
AATGCGGGTGGCCAATACCCCAGGCGGATGACGACGACGGCGGGCGCGGG
TCGGTACCCTCCGTCGTTTGGAGGAGCAGGGATTGGGGGGGGAGGGACAT
CAGGAGGAGGGATGGGAGAGACGGAGTTTCATCTAGACGTGGAGAGAATT
CTGATGGGGCTGGACAGACGGACGACGATTATGGTGCGGAATGTGCCTAA
CAAGgtaggttggtattgtttcctccctccctccctcccttcagttctgg
caacaactcctcattgaaatcaacatcgtctgcaatgtgaaagacgacga
ttagctcatcctctctccctcctctcgctccctccttccctccctccagT
ACTCGCAACAACTCCTCCTCAACGAGATCAACACCGCCCACAAGGGGAAA
TACGACTTTTTCTACCTTCCGATTGACTTCAAGAATAAATGCAACGTTGG
CTACGCGTTCATCAATTTCATCGATCCCAAGTCCATCATTCCTTTCTTCA
AAGAATTTAATGGCCAGAGgtaagcgtcatttcctcctttttctccctct
ctccccccttccttcctccctgtctcttgttcatgatcaagtcaactact
tcaactcaaaccttcccccttccctcgactccctctcttcctccctcgct
ccctcccttccagGTGGCATAACTTCAACAGCGAAAAAGTTTGTGCCATT
TCCTACGCCCGCATCCAAGGCCGGCAAAGCATGATCTCCCGCTTTTCTAA
TTCCTCCCTCATGGAGAAAGATGGGGAGTATCGCCCATTGCTCTTTCACT
CTTCCGGGCCTGACCGAGGCAAACCTGAGCCATTTCCCTTGTCCTCTAAG
CACTATGGAAGGAGGTCGGGAAGTAACACTCCCACCACCCCTACGAGCTA
TGTGATGGGCATGGCCGGATTAAACCTCGGGGGAATGGGGATGATGTGAG
GGAGGAAGGGAGGGAATTAGAGGTGGAGAGAGAGAGAAGGTGGATCTCAT
TTTTGTGCACCTGGCATTAGTAGAGAGTCAGGCGGGCAAGAGATGAGAAG
TGAGTGCCCGTATGCATGTCCTTCCCATTGTGGAAGAGCGAGCGAGTGTG
CCTGTCTCGGTAGATGTGTTAGGCCTTTTATTTTCATTGGTGTTCATATA
TATATATATATATATGTGTGTGTATCTGGCTGTCTGTCTGTCTGCGTGTG
TCAGCTCTGATGTCTTGTCACGATTTTCTGTCCTCGTTATTCACACACAC
GGGGAGCAGCAGCAGCGGCAGTAGCAGCACCAGCAGGAGGGTTGCCATTT
GTAGCCGGCCTGGTAGTGTGTGAAGCAAATGGACAGAGGGAAGAAAGCTG
TCGACGAAGCGAGCGATGAGAATGAGGGGATCGTGTGTAACATCACATCC
ATTTCCTTCACTATTTATTCGTCCACTCTACCCCACTATGTTTTAATGCT
TTTGGATCAGGAATTAATATTCTTCGATTTACTGGTCAGTTGGATAGACA
AATATTGAGGTAAAAAAGAGTGGATCCTGAACGAAGCGGCTCAGGATAAG
AAGCAGTTGCAACAGCAACATCAGCAGCAGGAGCCAATTGGACGACAGGC
AATATACATATACCAAGAATAGCAGCAGCAGCAGAAGAAGAAGATAGAGA
AGAAGCGAAATGCAATCAAACTGACTTCTAGCCGTGAAAGAGAGACTAAA
TTGGAAGAGTACATACATTCAGGGCCATAAGACGATGGACAGGAGGTCCA
ATTTTCCAATTGATTTTGTCGTAAGTTTTTGTGTGTGCGAGGAGAAAGAA
TGTGTTTTTGGGTTCTACTACCAGTAGCTTCTGCCGCAGTAGCAACAAAC
AACAGCAGCAAGGAGACCAGGGAAGAGGATATGTACCGATTTTCTAGCCG
CCCTTCGATACTACATCTGCTATACTATTATATTATTATTATTATTATTA
TTATTAT
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protein sequence of NO06G03800.1

>NO06G03800.1-protein ID=NO06G03800.1-protein|Name=NO06G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1290bp
MLSEPPGQTPTSSFLMFGASVSKFVTGARNSVSGSSSNSNSSNHAAAAGE
TGTQMSSTTPAALSAASCPSSSTITAAVAGAASSSVSGGDSPRGNGSATA
SLPSRGSQKNLEEMIGSSLAFAINSLDHLVHHPSMAMASLAGLGGSSSSN
SSSCGSGSGSGSDSDKCTNGSDNVTGSSTSTSSSSSSSSSCSSSCSSSGA
APALPSSTAGTISPAGSASGVTSGTTSPADTTSVSPESNNLLFLQAQMHA
RAPGQHAHPPVAPSHPSLEPSTYHLYQLQQQRRQQLELLQQQQQQQEMGA
GAVTAGGHPSAAALLAASSQQMVIPGNMTALAPHFLQPHQHTRPMPNPHH
ARLPVPPPLPQQQQQAALRLQQQQQAAAAANSGGNSNSCASSNAENSTSS
PAFSSSNHLHHLNNKIGSSHQQQHQHQHQHHQQQQQQQQQPSVCSAGGSS
TLSNNHPHHHLPLPIHAQLQRQQQPQQQQIPPPYPHQQQQQLQQQLQFLQ
QLQLQQLHGTTSKAPEHGGRGGGGGGGGGGGGGGGGGGNRAALFETQAGI
ELCHFLLETESRALTLFNVEQVSAELLMRACENIGSLAYLRMDFRACRGV
VFLAYQDLRASLRAFHTLPRDLAALVEKPAPTSSSSTSSPSTCTSNPRPS
SPLHPLPSVHYSIMLNAATTPRDGILLVRECPSSLPPSLPLSLSLTESDV
QAVFAAYGQLKNVHRRMLLSSLPHSSASYSSSSPHYTTVTPPTGLPSLPL
PPGNTLAFLVEYYDVQDAKTAAFELSATTPWGNSIIVDEAERSEKERQLG
QQLLLTLHRWREEQRAAQLSAALSSSLGVAATGGEGAGDEVREGVGGGST
GGVFYGGSPQSSVSGMTTAGTSSSSSLSPSQLLFLQQATSCPGVTSAATL
MKMANGVSNNNIINNNNNNVNNSNNNNNNNNNNNNHNNHNGGIGSAGRGP
AYGRGGVGESQSMTPTIGHHSSSSPYGGSHPSSAPSSSSVAYHHHHQQLL
QQQQQQQQQLYMDSMSPISYDGLGGGMLGGSTDAAAAAAAAAAFKGMWIS
PNHHLGSPPPMGGGRGRVSPNAGGQYPRRMTTTAGAGRYPPSFGGAGIGG
GGTSGGGMGETEFHLDVERILMGLDRRTTIMVRNVPNKYSQQLLLNEINT
AHKGKYDFFYLPIDFKNKCNVGYAFINFIDPKSIIPFFKEFNGQRWHNFN
SEKVCAISYARIQGRQSMISRFSNSSLMEKDGEYRPLLFHSSGPDRGKPE
PFPLSSKHYGRRSGSNTPTTPTSYVMGMAGLNLGGMGMM*
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Synonyms
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