NO06G03790, NO06G03790 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_068668698.1 (16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Thermosulfurimonas dismutans] >OAQ21859.1 Ribosomal RNA small subunit methyltransferase B [Thermosulfurimonas dismutans]) HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11 Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 0 Query: 10 WGLVRVLESEEALNVLLSPETKEGASEKGKEEGR--CDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 W L R+ E+ E L + +E K G D +L+DA C+ +GV RRH ++W KPED LV +P Q ALL K GG LV+ATCS EENEEV+ FL ++ Sbjct: 295 WRLKRLRENAERLGITNVETITADVTEAVKALGGNFFDRILIDAPCTGTGVIRRHPDIKWARKPED-LVKVPEKQLALLESLSETLKKGGLLVYATCSLEPEENEEVIQQFLARH 408
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_087355318.1 (hypothetical protein [Collinsella sp. An7] >OUN47155.1 hypothetical protein B5G20_04030 [Collinsella sp. An7]) HSP 1 Score: 77.8 bits (190), Expect = 5.100e-11 Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0 Query: 40 EEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALV--TLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFL 120 E R D VL+DA CS +G RRH + W L+P D LPA+Q ALL +A VGG+LV+ATCS L EENE V+ FL Sbjct: 342 ERVRYDTVLLDAPCSGTGTMRRHPEIPWRLEPADVAPGGALPALQLALLTEASRRVAVGGQLVYATCSVLAEENERVVDAFL 423
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_007662134.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. AP07] >EJL38023.1 tRNA/rRNA cytosine-C5-methylase [Caulobacter sp. AP07]) HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11 Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 EG KG EG+ D+V VDA C+ SG RRH +W L P D L Q A+LA A KVGGRL++ TCS L EENE+ +A F+E++ Sbjct: 291 EGEPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADAADFVKVGGRLIYVTCSLLVEENEDRVAAFIERH 379
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_029914730.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. UNC358MFTsu5.1]) HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11 Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 EGA KG EG+ D+V VDA C+ SG RRH +W L P D L Q A+LA A K GGRL++ TCS L EENE+ +A F+E++ Sbjct: 291 EGAPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADASDFVKPGGRLIYVTCSLLAEENEDRVAAFVERH 379
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_056722504.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. Root655] >KRA60397.1 MFS transporter [Caulobacter sp. Root655]) HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11 Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 EG KG EG+ D+V VDA C+ SG RRH +W L P D L Q A+LA A KVGGRL++ TCS L EENE+ +A F+E++ Sbjct: 291 EGEPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADAADFVKVGGRLIYVTCSLLVEENEDRVAAFIERH 379
BLAST of NO06G03790 vs. NCBI_GenBank
Match: OHC72329.1 (SAM-dependent methyltransferase [Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24]) HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGD 125 +G+ D VLVDA CS G RR+ L+W PE ++ L A Q A+LA A K GGRLV+ATCS L EENEE++ FL +GD Sbjct: 315 QGKVDRVLVDAPCSGLGTLRRNPDLKWRQSPE-SVAELTAKQGAILAAAAKLLKPGGRLVYATCSILAEENEEIVNAFLAAHGD 397
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_003611429.1 (MULTISPECIES: RsmB/NOP family class I SAM-dependent RNA methyltransferase [Methylosinus] >OBS53043.1 MFS transporter [Methylosinus sp. 3S-1] >ATQ70048.1 MFS transporter [Methylosinus trichosporium OB3b]) HSP 1 Score: 77.0 bits (188), Expect = 8.700e-11 Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 0 Query: 16 LESEEALNVLLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123 LE A NV + + GA E RCD+VL+DA C+ +G RRH +W L P AL Q LLA+A ++ + GGRLV+ TCS L++ENE +A FL ++ Sbjct: 275 LERAGARNVQVR-APRGGADMLADLEARCDLVLIDAPCTGTGTWRRHPDAKWRLAP-GALAARLEEQRELLAKAPLYVRPGGRLVYVTCSLLRDENEAQIAAFLAEH 379
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_104303248.1 (SAM-dependent methyltransferase [Zhizhongheella caldifontis] >PPE65626.1 SAM-dependent methyltransferase [Zhizhongheella caldifontis]) HSP 1 Score: 77.0 bits (188), Expect = 8.700e-11 Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 0 Query: 42 GRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQA 154 G+ D VLVDA CS G RR+ L+W P+ A+ L A QHA+LA A K GGRLV+ATCS L EENE+V F + + D FR LP ++ A TQA Sbjct: 290 GKVDRVLVDAPCSGLGTLRRNPDLKWRQSPQ-AVQELQAKQHAILASAARLLKSGGRLVYATCSVLPEENEQVAEAFTQAHRD----------FRVLP------AVEALTQA 384
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_014075812.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Sphingobium sp. SYK-6] >BAK66161.1 hypothetical protein SLG_14860 [Sphingobium sp. SYK-6]) HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0 Query: 4 ARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG 143 A RA G ++E+ +LL P +E A EGRCDVVL+DA CS +G RR+ RW L PE + + A+Q LL A + GGRLV+A CS L+ E E++ F+ + +R +PW G Sbjct: 244 APRAARAGAANMIET-----LLLDPGREEAA--LASLEGRCDVVLIDAPCSGAGTWRRNPEARWRLTPE-RVARINALQARLLRVAAPLVRPGGRLVYAVCSLLEREGREIIQDFV----------SFDPLWRPVPWNG 364
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_019559934.1 (MULTISPECIES: RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caldimonas]) HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10 Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 0 Query: 42 GRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNG 160 G+ D VLVDA CS G RR+ L+W P+ A+ L A Q A+L A K GGRLV+ATCS L ENE++ A F E + D + G E +A Q E + Q W R+G Sbjct: 290 GKVDRVLVDAPCSGLGTLRRNPDLKWRQSPQ-AVAELQARQRAILDSAARLLKPGGRLVYATCSVLPAENEQIAASFSEAHPDFCRLGAAEALTQAKVPQPERLVQGDSLQLWPHRHG 406 The following BLAST results are available for this feature:
BLAST of NO06G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03790 ID=NO06G03790|Name=NO06G03790|organism=Nannochloropsis oceanica|type=gene|length=1457bpback to top protein sequence of NO06G03790.1 >NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bpback to top Synonyms
Publications
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