NO06G03790, NO06G03790 (gene) Nannochloropsis oceanica

Overview
NameNO06G03790
Unique NameNO06G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr6:1049054..1050510 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal RNA small subunit methyltransferase B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1049054..1050510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR001678MeTrfase_RsmB/NOP2
IPR023267RCMT
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Homology
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_068668698.1 (16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Thermosulfurimonas dismutans] >OAQ21859.1 Ribosomal RNA small subunit methyltransferase B [Thermosulfurimonas dismutans])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 0
Query:   10 WGLVRVLESEEALNVLLSPETKEGASEKGKEEGR--CDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            W L R+ E+ E L +          +E  K  G    D +L+DA C+ +GV RRH  ++W  KPED LV +P  Q ALL       K GG LV+ATCS   EENEEV+  FL ++
Sbjct:  295 WRLKRLRENAERLGITNVETITADVTEAVKALGGNFFDRILIDAPCTGTGVIRRHPDIKWARKPED-LVKVPEKQLALLESLSETLKKGGLLVYATCSLEPEENEEVIQQFLARH 408          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_087355318.1 (hypothetical protein [Collinsella sp. An7] >OUN47155.1 hypothetical protein B5G20_04030 [Collinsella sp. An7])

HSP 1 Score: 77.8 bits (190), Expect = 5.100e-11
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   40 EEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALV--TLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFL 120
            E  R D VL+DA CS +G  RRH  + W L+P D      LPA+Q ALL +A     VGG+LV+ATCS L EENE V+  FL
Sbjct:  342 ERVRYDTVLLDAPCSGTGTMRRHPEIPWRLEPADVAPGGALPALQLALLTEASRRVAVGGQLVYATCSVLAEENERVVDAFL 423          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_007662134.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. AP07] >EJL38023.1 tRNA/rRNA cytosine-C5-methylase [Caulobacter sp. AP07])

HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0
Query:   32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            EG   KG  EG+ D+V VDA C+ SG  RRH   +W L P D L      Q A+LA A    KVGGRL++ TCS L EENE+ +A F+E++
Sbjct:  291 EGEPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADAADFVKVGGRLIYVTCSLLVEENEDRVAAFIERH 379          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_029914730.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. UNC358MFTsu5.1])

HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0
Query:   32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            EGA  KG  EG+ D+V VDA C+ SG  RRH   +W L P D L      Q A+LA A    K GGRL++ TCS L EENE+ +A F+E++
Sbjct:  291 EGAPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADASDFVKPGGRLIYVTCSLLAEENEDRVAAFVERH 379          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_056722504.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caulobacter sp. Root655] >KRA60397.1 MFS transporter [Caulobacter sp. Root655])

HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0
Query:   32 EGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            EG   KG  EG+ D+V VDA C+ SG  RRH   +W L P D L      Q A+LA A    KVGGRL++ TCS L EENE+ +A F+E++
Sbjct:  291 EGEPLKGL-EGKLDLVFVDAPCTGSGTWRRHPDAKWRLSP-DQLAKRQIEQDAVLADAADFVKVGGRLIYVTCSLLVEENEDRVAAFIERH 379          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: OHC72329.1 (SAM-dependent methyltransferase [Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24])

HSP 1 Score: 77.4 bits (189), Expect = 6.600e-11
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGD 125
            +G+ D VLVDA CS  G  RR+  L+W   PE ++  L A Q A+LA A    K GGRLV+ATCS L EENEE++  FL  +GD
Sbjct:  315 QGKVDRVLVDAPCSGLGTLRRNPDLKWRQSPE-SVAELTAKQGAILAAAAKLLKPGGRLVYATCSILAEENEEIVNAFLAAHGD 397          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_003611429.1 (MULTISPECIES: RsmB/NOP family class I SAM-dependent RNA methyltransferase [Methylosinus] >OBS53043.1 MFS transporter [Methylosinus sp. 3S-1] >ATQ70048.1 MFS transporter [Methylosinus trichosporium OB3b])

HSP 1 Score: 77.0 bits (188), Expect = 8.700e-11
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 0
Query:   16 LESEEALNVLLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            LE   A NV +    + GA      E RCD+VL+DA C+ +G  RRH   +W L P  AL      Q  LLA+A ++ + GGRLV+ TCS L++ENE  +A FL ++
Sbjct:  275 LERAGARNVQVR-APRGGADMLADLEARCDLVLIDAPCTGTGTWRRHPDAKWRLAP-GALAARLEEQRELLAKAPLYVRPGGRLVYVTCSLLRDENEAQIAAFLAEH 379          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_104303248.1 (SAM-dependent methyltransferase [Zhizhongheella caldifontis] >PPE65626.1 SAM-dependent methyltransferase [Zhizhongheella caldifontis])

HSP 1 Score: 77.0 bits (188), Expect = 8.700e-11
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 0
Query:   42 GRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQA 154
            G+ D VLVDA CS  G  RR+  L+W   P+ A+  L A QHA+LA A    K GGRLV+ATCS L EENE+V   F + + D          FR LP      ++ A TQA
Sbjct:  290 GKVDRVLVDAPCSGLGTLRRNPDLKWRQSPQ-AVQELQAKQHAILASAARLLKSGGRLVYATCSVLPEENEQVAEAFTQAHRD----------FRVLP------AVEALTQA 384          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_014075812.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Sphingobium sp. SYK-6] >BAK66161.1 hypothetical protein SLG_14860 [Sphingobium sp. SYK-6])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0
Query:    4 ARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG 143
            A RA   G   ++E+     +LL P  +E A      EGRCDVVL+DA CS +G  RR+   RW L PE  +  + A+Q  LL  A    + GGRLV+A CS L+ E  E++  F+            +  +R +PW G
Sbjct:  244 APRAARAGAANMIET-----LLLDPGREEAA--LASLEGRCDVVLIDAPCSGAGTWRRNPEARWRLTPE-RVARINALQARLLRVAAPLVRPGGRLVYAVCSLLEREGREIIQDFV----------SFDPLWRPVPWNG 364          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_019559934.1 (MULTISPECIES: RsmB/NOP family class I SAM-dependent RNA methyltransferase [Caldimonas])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   42 GRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNG 160
            G+ D VLVDA CS  G  RR+  L+W   P+ A+  L A Q A+L  A    K GGRLV+ATCS L  ENE++ A F E + D  + G  E   +A   Q E      + Q W  R+G
Sbjct:  290 GKVDRVLVDAPCSGLGTLRRNPDLKWRQSPQ-AVAELQARQRAILDSAARLLKPGGRLVYATCSVLPAENEQIAASFSEAHPDFCRLGAAEALTQAKVPQPERLVQGDSLQLWPHRHG 406          
The following BLAST results are available for this feature:
BLAST of NO06G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_068668698.13.900e-1141.7416S rRNA (cytosine(967)-C(5))-methyltransferase Rs... [more]
WP_087355318.15.100e-1151.22hypothetical protein [Collinsella sp. An7] >OUN471... [more]
WP_007662134.16.600e-1148.35RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
WP_029914730.16.600e-1148.35RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
WP_056722504.16.600e-1148.35RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
OHC72329.16.600e-1151.19SAM-dependent methyltransferase [Rhodocyclales bac... [more]
WP_003611429.18.700e-1142.06MULTISPECIES: RsmB/NOP family class I SAM-dependen... [more]
WP_104303248.18.700e-1144.64SAM-dependent methyltransferase [Zhizhongheella ca... [more]
WP_014075812.11.100e-1036.69RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
WP_019559934.11.100e-1041.53MULTISPECIES: RsmB/NOP family class I SAM-dependen... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03790.1NO06G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651774gene_6709Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03790.1NO06G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03790 ID=NO06G03790|Name=NO06G03790|organism=Nannochloropsis oceanica|type=gene|length=1457bp
ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA
TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA
ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG
TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG
CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA
CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG
GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA
AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG
TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC
TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC
GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG
GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG
GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG
AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT
CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA
AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC
ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA
CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG
AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT
AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA
TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA
GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC
CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA
TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA
AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC
AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC
CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC
TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT
CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT
ACATGAG
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protein sequence of NO06G03790.1

>NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAGARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVD
ALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLV
FATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAA
TQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMKTWDGY
CRSGNSSSSRRRRRKNKCRREGEGREFLINSLMYMYIK*
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Synonyms
Publications