NO06G03790.1, NO06G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03790.1
Unique NameNO06G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr6:1049054..1050510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1049054..1050510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G03790.1 vs.
Match: ABZ08202.1 (putative NOL1/NOP2/sun family protein [uncultured marine microorganism HF4000_APKG2J17])

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   38 GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNGG 161
            GK  G+ D VL D  C+ +G  RR    RW    +D L  + A+Q  +LA AQ+  K GGRL++ATCS L+EENE  LAWFLE++GD          F+ALP            Q W++  GG
Sbjct:  314 GKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTLDD-LDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKHGD----------FQALP----------IDQVWAETVGG 415          
The following BLAST results are available for this feature:
BLAST of NO06G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ABZ08202.11.900e-1341.46putative NOL1/NOP2/sun family protein [uncultured ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03790NO06G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03790.1NO06G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03790.1.cds1NO06G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA
TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA
ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG
TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG
CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA
CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG
GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA
AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG
TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC
TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC
GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG
GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG
GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG
AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT
CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA
AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC
ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA
CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG
AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT
AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA
TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA
GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC
CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA
TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA
AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC
AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC
CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC
TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT
CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT
ACATGAG
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protein sequence of NO06G03790.1

>NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAGARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVD
ALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLV
FATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAA
TQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMKTWDGY
CRSGNSSSSRRRRRKNKCRREGEGREFLINSLMYMYIK*
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mRNA from alignment at chr6:1049054..1050510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr6:1049054..1050510+ (Nannochloropsis oceanica)
ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT ACATGAG
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Coding sequence (CDS) from alignment at chr6:1049054..1050510+

>NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr6:1049054..1050510+ (Nannochloropsis oceanica)
ATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTGGTGCGAGTGCTGGA
GAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGAAACAAAGGAAGGCG
CAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATGTCGTGTTGGTGGAC
GCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCACTCTTCCCTGCGGTG
GACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCCGGCCATCCAGCATG
CCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGGGAGGGAGGTTAGTC
TTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAGGAGGTGTTGGCTTG
GTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGGAGGGAAGGAAGAGT
GCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGTCCTTGAGAGCGGCG
ACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAAAGAAGGGAGGAGTT
GGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGCATGGAATGGATGGC
TTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGACATGGGATGGATAT
TGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGGAGGAGAAAGAATAA
GTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAATAAACTCGTTGATGT
ATATGTATATTAAGTAA
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Synonyms
Publications