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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1049054..1050510 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03790.1 vs.
Match: ABZ08202.1 (putative NOL1/NOP2/sun family protein [uncultured marine microorganism HF4000_APKG2J17]) HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13 Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0
Query: 38 GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNGG 161
GK G+ D VL D C+ +G RR RW +D L + A+Q +LA AQ+ K GGRL++ATCS L+EENE LAWFLE++GD F+ALP Q W++ GG
Sbjct: 314 GKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTLDD-LDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKHGD----------FQALP----------IDQVWAETVGG 415
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT ACATGAG back to topprotein sequence of NO06G03790.1 >NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp MAGARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVD ALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLV FATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAA TQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMKTWDGY CRSGNSSSSRRRRRKNKCRREGEGREFLINSLMYMYIK* back to topmRNA from alignment at chr6:1049054..1050510+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr6:1049054..1050510+ (Nannochloropsis oceanica) ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA
TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA
ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG
TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG
CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA
CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG
GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA
AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG
TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC
TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC
GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG
GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG
GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG
AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT
CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA
AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC
ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA
CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG
AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT
AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA
TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA
GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC
CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA
TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA
AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC
AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC
CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC
TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT
CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT
ACATGAG back to topCoding sequence (CDS) from alignment at chr6:1049054..1050510+ >NO06G03790.1 ID=NO06G03790.1|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr6:1049054..1050510+ (Nannochloropsis oceanica) ATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTGGTGCGAGTGCTGGA GAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGAAACAAAGGAAGGCG CAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATGTCGTGTTGGTGGAC GCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCACTCTTCCCTGCGGTG GACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCCGGCCATCCAGCATG CCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGGGAGGGAGGTTAGTC TTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAGGAGGTGTTGGCTTG GTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGGAGGGAAGGAAGAGT GCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGTCCTTGAGAGCGGCG ACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAAAGAAGGGAGGAGTT GGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGCATGGAATGGATGGC TTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGACATGGGATGGATAT TGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGGAGGAGAAAGAATAA GTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAATAAACTCGTTGATGT ATATGTATATTAAGTAA back to top
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