NO06G03790, NO06G03790 (gene) Nannochloropsis oceanica

Overview
NameNO06G03790
Unique NameNO06G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr6:1049054..1050510 +

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Properties
Property NameValue
DescriptionRibosomal RNA small subunit methyltransferase B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1049054..1050510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR001678MeTrfase_RsmB/NOP2
IPR023267RCMT
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Homology
BLAST of NO06G03790 vs. NCBI_GenBank
Match: ABZ08202.1 (putative NOL1/NOP2/sun family protein [uncultured marine microorganism HF4000_APKG2J17])

HSP 1 Score: 85.9 bits (211), Expect = 1.900e-13
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   38 GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAATQAWSDRNGG 161
            GK  G+ D VL D  C+ +G  RR    RW    +D L  + A+Q  +LA AQ+  K GGRL++ATCS L+EENE  LAWFLE++GD          F+ALP            Q W++  GG
Sbjct:  314 GKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTLDD-LDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKHGD----------FQALP----------IDQVWAETVGG 415          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_066662702.1 (hypothetical protein [Denitrobacterium detoxificans] >SEO77323.1 16S rRNA (cytosine967-C5)-methyltransferase [Denitrobacterium detoxificans])

HSP 1 Score: 84.0 bits (206), Expect = 7.100e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 0
Query:   45 DVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEAS 147
            D V +DA CS  G  RRH  +RW L+P D +  L  +Q  +L +A    KVGGRL +ATC+ L +ENE+V+  FLE   D GK      CFR +PW  E+A+
Sbjct:  334 DGVFLDAPCSGVGTLRRHPEIRWRLRPAD-VRALAELQLQMLTEASTRVKVGGRLAYATCTVLAQENEQVVKAFLE--SDQGK------CFRLVPWDPEDAN 426          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088863958.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus barossii] >ASJ03906.1 Fmu (Sun) domain-containing protein [Thermococcus barossii])

HSP 1 Score: 83.6 bits (205), Expect = 9.300e-13
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 0
Query:   41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160
            EG  D V++DA C+S G   ++  LRW L+ E  +  +  +Q  L+  A    K GGRL+++TCS LKEENE+V+ WFLE++GD           R +P +G  +E  L+   +AW  R+G
Sbjct:  319 EGIADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVELQKELIESAWELLKPGGRLLYSTCSMLKEENEDVVTWFLERHGDA----------RLVPLRGPYDEGFLKGTMRAWPHRHG 428          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088867581.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus radiotolerans] >ASJ15570.1 Fmu (Sun) domain-containing protein [Thermococcus radiotolerans])

HSP 1 Score: 80.1 bits (196), Expect = 1.000e-11
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 0
Query:   41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160
            EG  D V++DA C+S G   ++  LRW L+ E  +  +  +Q  LL  A    K GGRL+++TCS L EENEEV+ WFLE++GD             +P  G  +E  L    +AW  R+G
Sbjct:  319 EGMADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVKLQRELLESAWRLLKPGGRLLYSTCSMLPEENEEVVEWFLERHGDAA----------LIPLDGPYDEGFLPGTMRAWPHRHG 428          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: OLQ12913.1 (Ribosomal RNA small subunit methyltransferase B [Symbiodinium microadriaticum])

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11
Identity = 56/167 (33.53%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   39 KEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG----------EEASLRAATQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMK 196
            K   + DVVLVDA CSS GV RRH S RW L+ E  + ++ A Q  +L +A     VGGRLV+ATCS L+ EN+ V   F +  GD         CFR  P++            E +       W  +N   E R+ + P              + +GE   +S+K
Sbjct:  339 KPSSQADVVLVDAPCSSCGVWRRHPSQRWALQ-ESEIDSIAAQQLQILEEASQLVHVGGRLVYATCSLLRAENDAVAERFEQLAGD---------CFRRWPFESGRHCRTLMPHVEGTDGFFMARWQRQNKASESRQSIMPVATARNDASMGESIIKFGEAVSMSLK 495          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088863188.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus celer] >ASI99253.1 Fmu (Sun) domain-containing protein [Thermococcus celer Vu 13 = JCM 8558])

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-11
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 0
Query:   41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160
            +GR D VL+DA C+S G   ++  LRW L+ E  +  + ++Q  LL  A    K GGRL+++TCS  +EENE V+ WFL ++GD           R +P +G  +E  L    +AW  R+G
Sbjct:  319 KGRVDRVLLDAPCTSDGTMAKNPELRWRLR-EKNIPKVVSLQRELLESAWKLLKPGGRLLYSTCSMFREENEGVVEWFLRRHGDA----------RLVPIEGSYDEGFLPGTMRAWPHRHG 428          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_088179738.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Thermococcus sp. 5-4] >ASA76827.1 Fmu (Sun) domain-containing protein [Thermococcus sp. 5-4])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 0
Query:   41 EGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQG--EEASLRAATQAWSDRNG 160
            EG  D V++DA C+S G   ++  LRW L+ E  +  +  +Q  LL  A    K GGRL+++TCS L EENEEV+ WFLE++GD             +P  G  +E  L    +AW  R+G
Sbjct:  319 EGIADRVMLDAPCTSDGTIAKNPELRWRLR-EKNIPKVVKLQRELLESAWRLLKPGGRLLYSTCSMLPEENEEVVEWFLERHGDAA----------LIPLDGPYDEGFLPGTMRAWPHRHG 428          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: PIU58408.1 (hypothetical protein COS89_00550 [Deltaproteobacteria bacterium CG07_land_8_20_14_0_80_38_7])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   39 KEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            K EG+CDVVLVDA CS SG  RR+  L+W L  +D +     +Q ALL +A    K  GR+V+ TCS   +ENEE+ AWF +++
Sbjct:  300 KLEGKCDVVLVDAPCSGSGTIRRNPDLKWRLN-KDVINDRTNLQKALLEKATQLVKDNGRIVYITCSIFPQENEEIAAWFCQKF 382          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: WP_011387996.1 (RsmB/NOP family class I SAM-dependent RNA methyltransferase [Rhodospirillum rubrum] >YP_425335.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] >ABC21048.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] >AEO46716.1 tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum F11])

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11
Identity = 51/115 (44.35%), Postives = 64/115 (55.65%), Query Frame = 0
Query:   25 LLSPETKEGASEKGKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALP 140
            +L PET++      + +   DVVLVDA CS +G  RR+   RW L P D +  L A Q ALL +A    K GGRLV+ATCS L  ENE  +A FLE+  D          +RALP
Sbjct:  294 VLDPETRKWLK---RRKASFDVVLVDAPCSGTGTWRRNPDARWKLTP-DTISALNAEQSALLDRAAALVKPGGRLVYATCSLLPAENEAQIAAFLERRDD----------YRALP 394          
BLAST of NO06G03790 vs. NCBI_GenBank
Match: EKE10348.1 (hypothetical protein ACD_16C00051G0004 [uncultured bacterium] >OFW67912.1 hypothetical protein A2X70_06235 [Alphaproteobacteria bacterium GWC2_42_16] >OFW73747.1 hypothetical protein A2Z80_01305 [Alphaproteobacteria bacterium GWA2_41_27] >OFW82157.1 hypothetical protein A3E50_04945 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_100] >OFW85186.1 hypothetical protein A2W06_02335 [Alphaproteobacteria bacterium RBG_16_42_14] >OFW91340.1 hypothetical protein A3C41_08055 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30] >OFW93200.1 hypothetical protein A2W46_05345 [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13] >OFX05865.1 hypothetical protein A3H46_03630 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_43_54] >OFX07967.1 hypothetical protein A3G78_00550 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_29])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 0
Query:    4 ARRAGMWGLVRVLESEEALNVLLSPETKE--GASEK--GKEEGRCDVVLVDALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLVFATCSQLKEENEEVLAWFLEQY 123
            A    +W L R  E  +   V  + E +E  G ++K   +++ R D VLVDA CS SG  RR+   +WTL P+D L  L A+Q  LLA A    K GG LV+ATCS   EENE+V+A FL+ +
Sbjct:  269 ATDTALWRLKRTKERLKRAGV-FNVEIREISGMTDKWLKRQKERFDHVLVDAPCSGSGTWRRNPDKKWTLTPKD-LSELSALQQVLLAGAAPLVKPGGSLVYATCSLFYEENEDVVATFLKDH 389          
The following BLAST results are available for this feature:
BLAST of NO06G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ABZ08202.11.900e-1341.46putative NOL1/NOP2/sun family protein [uncultured ... [more]
WP_066662702.17.100e-1345.10hypothetical protein [Denitrobacterium detoxifican... [more]
WP_088863958.19.300e-1338.84RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
WP_088867581.11.000e-1138.84RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
OLQ12913.11.300e-1133.53Ribosomal RNA small subunit methyltransferase B [S... [more]
WP_088863188.11.300e-1138.02RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
WP_088179738.11.700e-1138.84RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
PIU58408.11.700e-1147.62hypothetical protein COS89_00550 [Deltaproteobacte... [more]
WP_011387996.13.000e-1144.35RsmB/NOP family class I SAM-dependent RNA methyltr... [more]
EKE10348.13.900e-1143.09hypothetical protein ACD_16C00051G0004 [uncultured... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03790.1NO06G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651774gene_6709Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03790.1NO06G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03790 ID=NO06G03790|Name=NO06G03790|organism=Nannochloropsis oceanica|type=gene|length=1457bp
ACTTGCAGTGTGCGCTTTTACACTTCCCTTGTAACGCTCACTATTCCCCA
TCTCTCCACTTGATATACCTACTTCCCCATCCTCCTCACCAACGTCCCCA
ACCGCAAGCACATTCTCCCGGTCCTCTTCGTCACCCCACGCTTAGAGCCG
TCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAATTATTCTAG
CCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGGAAGAAATA
CGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTG
GTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGA
AACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATG
TCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCAC
TCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCC
GGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGG
GAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAG
GAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGATGGAGGGAAGGAGGG
AGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGT
CCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGGAA
AGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCCCACGGTGC
ATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATCGATGAAGA
CATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCAGGAGGAGG
AGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGAATTTTTAAT
AAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGAGGAAAACA
TTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAAGAGGGAGA
GACAAATATTTCCAGTCCACCACCACACCTCGTCCAAAGTCAAAAGTTAC
CAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTGGTGGCTAGAA
TCCTGAAGGAGTGTGGAAATGTAAATTTTCAACAAGTCTCTTTGCTCATA
AAACGGCCGGCAGAAAAATGATGATGCGCTGGCCCTATTTTCTTGGTGAC
AGGGGATGAGGTAGGTATTTGATGCAGACGCCATTTTTCATCATTACTCC
CATTTGTATAAAATGGCATTTAAAGAAGGTTGACATTTCGCTTTCGTCGC
TGTGGTCTCCAAATGTAATGATAGATGTCCCGTAAACGTGGCGTCTGGAT
CTCTCCGTTCATGCACACTCATCCGGTTGTGGATAAGTGGTTAGTAAGCT
ACATGAG
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protein sequence of NO06G03790.1

>NO06G03790.1-protein ID=NO06G03790.1-protein|Name=NO06G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAGARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVD
ALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLV
FATCSQLKEENEEVLAWFLEQYGDGGKEGGKEECFRALPWQGEEASLRAA
TQAWSDRNGGEERREELAPGTVQLLPHGAWNGWLLYGEVRKVSMKTWDGY
CRSGNSSSSRRRRRKNKCRREGEGREFLINSLMYMYIK*
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Synonyms
Publications