NO06G03700, NO06G03700 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G03700
Unique Name	NO06G03700
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2939
Alignment location	chr6:1023703..1026641 +

Link to JBrowse

Properties


Property Name	Value
Description	Phytochrome-associated serine/threonine-protein phosphatase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1023703..1026641 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0016787	hydrolase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR004843	Calcineurin-like_PHP_apaH
IPR006186	Ser/Thr-sp_prot-phosphatase

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process

Homology

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: EWM26373.1 (phytochrome-associated serine threonine protein phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 461.1 bits (1185), Expect = 2.100e-126
Identity = 219/229 (95.63%), Postives = 222/229 (96.94%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVETLTLLLCLKARYPQ+MTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQ XXXXX QEIPH+GPFCDMMWSDPEDI DPWVISPRGAGYLFGSKVT+ FN VNGLELICRAHQLVMEGFKYHF ERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESN AEERRNLVPYFL
Sbjct:   75 MGDFVDRGHNSVETLTLLLCLKARYPQNMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQXXXXXXXQEIPHEGPFCDMMWSDPEDITDPWVISPRGAGYLFGSKVTREFNQVNGLELICRAHQLVMEGFKYHFAERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNQAEERRNLVPYFL 303

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: CCI45242.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 396.4 bits (1017), Expect = 6.200e-107
Identity = 178/229 (77.73%), Postives = 201/229 (87.77%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LLLCLKARYP  +TLLRGNHE RQITQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG++LCVHGGLSPEIRT+DQI      QE+PH+G FCD+MWSDPE+ I+ W +SPRGAGYLFG+KVT+ FNH+NGLELICRAHQLV EG+KY FP+++LVTVWSAPNYCYRCGNVAA+LAFDENL+REFK+F+EVPES      R  VPYFL
Sbjct:  111 MGDFVDRGHNSVETFELLLCLKARYPDRITLLRGNHECRQITQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAVIDGRILCVHGGLSPEIRTLDQIRVIERHQEVPHEGSFCDLMWSDPEE-IETWAMSPRGAGYLFGAKVTREFNHINGLELICRAHQLVQEGYKYMFPDQNLVTVWSAPNYCYRCGNVAAILAFDENLSREFKLFREVPESCDNYSERATVPYFL 338

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: GAX98060.1 (serine/threonine-protein phosphatase ppe1 [Pythium insidiosum])

HSP 1 Score: 393.7 bits (1010), Expect = 4.000e-106
Identity = 180/229 (78.60%), Postives = 198/229 (86.46%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LLLCLKA YP  +TLLRGNHE RQITQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG+VLCVHGGLSPEIRT+DQI      QEIPH+G FCD+MWSDPED I+ W +SPRGAGYLFG+KVT  FN +NGLELICRAHQLV EG+KY FPERSLVTVWSAPNYCYRCGNVAA+L+FDENL R+FK+F+EV ES     +R LVPYFL
Sbjct:   92 MGDFVDRGHNSVETFELLLCLKACYPDRITLLRGNHECRQITQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAVIDGRVLCVHGGLSPEIRTLDQIRTIERQQEIPHEGAFCDLMWSDPED-IETWAMSPRGAGYLFGAKVTAEFNQINGLELICRAHQLVQEGYKYMFPERSLVTVWSAPNYCYRCGNVAAILSFDENLERDFKLFREVAESTETLGQRALVPYFL 319

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: CBJ32273.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 393.3 bits (1009), Expect = 5.300e-106
Identity = 178/230 (77.39%), Postives = 202/230 (87.83%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESN-MAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LL+ LKARYP  MTLLRGNHESRQITQVYGFYEECMRKYGNAN WKYCV+VFD+LNLAAL+D +VLCVHGGLSPEIRT+DQI      +EIPH+G FCDMMWSDPE+I D W+ISPRGAGYLFGS+V + FNH+NGL+LICRAHQLVMEGFKYHF  +S+ TVWSAPNYCYRCGNVAA+LA DENL R+FK+F EV ES+  A++R+ +VPYFL
Sbjct:   75 MGDFVDRGHNSVETFQLLMALKARYPDCMTLLRGNHESRQITQVYGFYEECMRKYGNANPWKYCVEVFDHLNLAALVDNEVLCVHGGLSPEIRTIDQIRTIERNKEIPHEGAFCDMMWSDPEEIRDAWLISPRGAGYLFGSRVAEEFNHMNGLDLICRAHQLVMEGFKYHFASKSVATVWSAPNYCYRCGNVAAMLALDENLGRDFKIFHEVEESSYKAQQRQAVVPYFL 304

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: CCA19330.1 (serine/threonineprotein phosphatase ppe1 putative [Albugo laibachii Nc14])

HSP 1 Score: 393.3 bits (1009), Expect = 5.300e-106
Identity = 177/229 (77.29%), Postives = 200/229 (87.34%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LLLCLKARYP  +TLLRGNHE RQITQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG++LCVHGGLSPEIRT+DQI      QEIPH+G FCD+MWSDPE+ I+ W +SPRGAGYLFG+KVT+ FNH+NGLELICRAHQLV EG+KY FP++ LVTVWSAPNYCYRCGNVAA+L+FDENL+R+FK+F+EVPES      R  VPYFL
Sbjct:  160 MGDFVDRGHNSVETFELLLCLKARYPDRITLLRGNHECRQITQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAVIDGRILCVHGGLSPEIRTLDQIRVIERHQEIPHEGSFCDLMWSDPEE-IETWAMSPRGAGYLFGAKVTREFNHINGLELICRAHQLVQEGYKYMFPDQDLVTVWSAPNYCYRCGNVAAILSFDENLSRDFKLFREVPESCDNYSERANVPYFL 387

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: XP_008617194.1 (phytochrome-associated serine/threonine protein phosphatase [Saprolegnia diclina VS20] >EQC29427.1 phytochrome-associated serine/threonine protein phosphatase [Saprolegnia diclina VS20])

HSP 1 Score: 391.3 bits (1004), Expect = 2.000e-105
Identity = 176/229 (76.86%), Postives = 199/229 (86.90%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRG+NSVET  LLLCLKARYP  +TLLRGNHESRQ+TQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG+VLCVHGGLSPEI T+DQ+      QE+PH+G FCD+MWSDPED I+ W +SPRGAG+LFGSKVT  FNHVNGLELICRAHQL  EG+ Y FPE+SLVTVWSAPNYCYR GN+AA+LAFDE+LNREFK+F+EVPES  +   R+ VPYFL
Sbjct:   77 MGDFVDRGNNSVETFELLLCLKARYPDRITLLRGNHESRQVTQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAVIDGRVLCVHGGLSPEIHTLDQVRTIERQQEVPHEGAFCDLMWSDPED-IETWAMSPRGAGFLFGSKVTAEFNHVNGLELICRAHQLAQEGYTYMFPEKSLVTVWSAPNYCYRVGNLAAILAFDEHLNREFKIFREVPESTQSATVRSTVPYFL 304

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: XP_012195088.1 (phytochrome-associated serine/threonine protein phosphatase [Saprolegnia parasitica CBS 223.65] >KDO34352.1 phytochrome-associated serine/threonine protein phosphatase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 391.0 bits (1003), Expect = 2.600e-105
Identity = 176/229 (76.86%), Postives = 199/229 (86.90%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRG+NSVET  LLLCLKARYP  +TLLRGNHESRQ+TQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG+VLCVHGGLSPEI T+DQ+      QE+PH+G FCD+MWSDPED I+ W +SPRGAG+LFGSKVT  FNHVNGLELICRAHQL  EG+ Y FPE+SLVTVWSAPNYCYR GN+AA+LAFDE+LNREFK+F+EVPES  +   R+ VPYFL
Sbjct:   77 MGDFVDRGNNSVETFELLLCLKARYPDRITLLRGNHESRQVTQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAVIDGRVLCVHGGLSPEIHTLDQVRTIERQQEVPHEGAFCDLMWSDPED-IETWAMSPRGAGFLFGSKVTAEFNHVNGLELICRAHQLAQEGYTYMFPEKSLVTVWSAPNYCYRVGNLAAILAFDEHLNREFKIFREVPESTQSATVRSSVPYFL 304

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: XP_005705136.1 (protein phosphatase [Galdieria sulphuraria] >EME28616.1 protein phosphatase [Galdieria sulphuraria])

HSP 1 Score: 389.8 bits (1000), Expect = 5.800e-105
Identity = 176/229 (76.86%), Postives = 197/229 (86.03%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRG+NS+ET TLLLCLKARYP  +TLLRGNHESRQITQVYGFY+EC RKYGNANAWKYC +VFDYL +AALIDG++LCVHGGLSP+IRT+DQI      QEIPH+G FCD+MWSDPED I+ W +SPRGAG+LFGSKVT  FNH+N L LICRAHQLV EG+KY FPERSLVTVWSAPNYCYRCGNVAA+LAFDENL REFK+F+EV E +     R  VPYFL
Sbjct:   78 MGDFVDRGYNSLETFTLLLCLKARYPSRVTLLRGNHESRQITQVYGFYDECQRKYGNANAWKYCCEVFDYLTIAALIDGEILCVHGGLSPDIRTLDQIRTVDRRQEIPHEGAFCDLMWSDPED-IETWAVSPRGAGWLFGSKVTSEFNHINKLSLICRAHQLVQEGYKYMFPERSLVTVWSAPNYCYRCGNVAAILAFDENLEREFKIFREVAEDHHVVPARAAVPYFL 305

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: XP_008912279.1 (phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica INRA-310] >ETI36972.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica P1569] >ETK77192.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica] >ETL30627.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica] >ETL83854.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica] >ETM37051.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica] >ETN02242.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica INRA-310] >ETO65696.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica P1976] >ETP06797.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica CJ01A1] >ETP34902.1 phytochrome-associated serine/threonine protein phosphatase [Phytophthora parasitica P10297])

HSP 1 Score: 388.3 bits (996), Expect = 1.700e-104
Identity = 178/229 (77.73%), Postives = 199/229 (86.90%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LLLCLKARYP  +TLLRGNHE RQITQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG+VLCVHGGLSPEIRT+DQI      QEIPH+G FCD+MWSDPED I+ W +SPRGAGYLFG+KVTQ FN +NGL+LICRAHQLV EG+KY F + SLVTVWSAPNYCYRCGNVAA+L+FDENL R+FK+F+EV ES+    +R LVPYFL
Sbjct:   94 MGDFVDRGHNSVETFELLLCLKARYPDRITLLRGNHECRQITQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAIIDGRVLCVHGGLSPEIRTLDQIRTIERQQEIPHEGSFCDLMWSDPED-IETWAMSPRGAGYLFGAKVTQEFNQINGLDLICRAHQLVQEGYKYMF-DNSLVTVWSAPNYCYRCGNVAAILSFDENLERDFKLFREVAESSDGFNQRALVPYFL 320

[Close]

BLAST of NO06G03700 vs. NCBI_GenBank
Match: OWZ16757.1 (Phytochrome-associated serine/threonine protein phosphatase [Phytophthora megakarya])

HSP 1 Score: 388.3 bits (996), Expect = 1.700e-104
Identity = 178/229 (77.73%), Postives = 199/229 (86.90%), Query Frame = 0

Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIXXXXXVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVET  LLLCLKARYP  +TLLRGNHE RQITQVYGFYEEC+RKYGNAN WKYC DVFDYLNLAA+IDG+VLCVHGGLSPEIRT+DQI      QEIPH+G FCD+MWSDPED I+ W +SPRGAGYLFG+KVTQ FN +NGL+LICRAHQLV EG+KY F + SLVTVWSAPNYCYRCGNVAA+L+FDENL R+FK+F+EV ES+    +R LVPYFL
Sbjct:   94 MGDFVDRGHNSVETFELLLCLKARYPDRITLLRGNHECRQITQVYGFYEECVRKYGNANPWKYCTDVFDYLNLAAIIDGRVLCVHGGLSPEIRTLDQIRTIERQQEIPHEGSFCDLMWSDPED-IETWAMSPRGAGYLFGAKVTQEFNQINGLDLICRAHQLVQEGYKYMF-DNSLVTVWSAPNYCYRCGNVAAILSFDENLERDFKLFREVAESSDGFNQRALVPYFL 320

The following BLAST results are available for this feature:

BLAST of NO06G03700 vs. NCBI_GenBank

BLAST of NO06G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26373.1	2.100e-126	95.63	phytochrome-associated serine threonine protein ph...	[more]
CCI45242.1	6.200e-107	77.73	unnamed protein product [Albugo candida]	[more]
GAX98060.1	4.000e-106	78.60	serine/threonine-protein phosphatase ppe1 [Pythium...	[more]
CBJ32273.1	5.300e-106	77.39	conserved unknown protein [Ectocarpus siliculosus]	[more]
CCA19330.1	5.300e-106	77.29	serine/threonineprotein phosphatase ppe1 putative ...	[more]
XP_008617194.1	2.000e-105	76.86	phytochrome-associated serine/threonine protein ph...	[more]
XP_012195088.1	2.600e-105	76.86	phytochrome-associated serine/threonine protein ph...	[more]
XP_005705136.1	5.800e-105	76.86	protein phosphatase [Galdieria sulphuraria] >EME28...	[more]
XP_008912279.1	1.700e-104	77.73	phytochrome-associated serine/threonine protein ph...	[more]
OWZ16757.1	1.700e-104	77.73	Phytochrome-associated serine/threonine protein ph...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000107	NSK000107	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G03700.1	NO06G03700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO06G03700.2	NO06G03700.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597754	gene_6699	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100031g16	gene4161	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G03700.1	NO06G03700.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO06G03700.2	NO06G03700.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO06G03700 ID=NO06G03700|Name=NO06G03700|organism=Nannochloropsis oceanica|type=gene|length=2939bp
CAGCGAAAAGGCTTCTCTGGCGAAGGCATGAAGAGTTGGAGAGTCTATGG
CAATGGCAGACGAAGCAGTCTGTCGCAGAGAGACAACCCACCAATCTCCC
GTCTACCTCTTCTGTATACAGGTGCTTACATGTAGACGTGATTTCCAGGG
TGTGTTCGATGAAAATAAGGAAATGGCAACCTCCTCTCTCCAAGCTCCAC
CACAGCTGCGTACTGGCTGTGATGACGATGAGCATTCACTGCAACAGCAC
TCTCCACAAAGTCAATCAACCCCATGCCACCACAGGAATTAACAGGGAAC
TTGATAAGCTCAAAGGCTTTCGGGTTGCTGACTTCACGGTTCCCTATGCC
GCCACTTTTGTTTTTTCAAGCCCCCATTCTAACTCTCCCTCATATACACC
ACCACTATGAAAATTGGACAGAGACCTAGCACTTTCAGACACTCCCTATG
CTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCA
CGAACTGAAGAAGCTATGTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTG
TTGCCTTCCCGCTACTCCCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGG
TCCACCACATCTGGCCTCGTCTCCCTCCAGGCTAGTGCATACCGTGAATA
TCCGCTTCCTTTATATTGTTATCCTCAGCTGCTGCACAAAGCTAACCGAA
GCCTCTATCCATTGCTCCTTCCAACCCAACATCTCCTCCCCCCCGCCTTC
CCGTCATCCTTCCCTACATACCCATTCTAACCCTGGCGGCTCCCTCCTCT
TCTCTCCCCGCACAAACCCAAAACAAAGGTGAAAGAAATTCTTATCGAAG
AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC
CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT
GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA
ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC
CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA
Ggtaaagggggaggggggcgggagggatggaaaggacgctgtttttttgt
gcgaaatgtagacatatgtcggtacgataatttccgaatccatttctcca
ttcctccctcctttccccccccccctccagGTGTACGGTTTCTACGAGGA
GTGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACG
TGTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGC
GTGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGgtataagc
cttgcccttaaccctcccgcccttcattgactcccttccttcttctggtc
ttgtctttttccttctttatctcacctcagcccacacaccttgccagttc
tctctttcgccacgtatctctcttgatttttcatgactttcgatcaacaa
catgcgcctttcccctcctggttgctcaatacatctcaatatatcctctc
ttcccgcatttactcccgctctcgttcagATCCGCACCATCGACCGTGTC
CAGGAAATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAGTGACCC
CGAGGACATAATTGACCCGTGGGTGATCTCGCCACGgtgagggagggagg
gaagggagggagaaaaggagggaaggaggggcatggatggctggaggtcc
acgacctgtgtaataaaagaggaaggaggagaaaagaggacaaagatcat
cactagagctcatggtgtttgtcgtccttccgttcatgtttctgattacc
cttctatccagGGGTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGC
TTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAG
TTATGGAAGgtgagtagcctccacctcccatctaatttcctcctttcttc
cctttctccctccattcattttttctggttgactcgttgcagcgtgataa
cgatagttacccctgtaatcccggcatctgatcgtccccccctccctccc
tccctccctccctccctccctccctccctccctcgcagGCTTCAAATACC
ATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACTGC
TATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAA
CCGAGAGTTCAAGATGTTCAAGGgtaaggagggagggagagagacttatt
accgttttttcgatcggtcgcctcactctttccttccctccctacctccc
tttcctacagAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCT
CGTACCTTACTTCCTGTAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAG
GGACGGAGGGACGGAGGGGCGAGGACAATGATTTTGCAAGGAGGGAGAAG
TGGGGGTGGTGTGTACACAGGAGAGATCAAATTCCAATAAGTGAAAGGGA
AGAGCGGACGGCCTCGCGTGTGTGTGTGAGAGATATATTCAAGAAGATAG
AGAAGAAAAGAAAGCGGAAGGGAATGCCCTTTCGCTCCTGTTTGCGTGTG
AAATCATTTTTGTAGTGAGATGATGATGTAATCCTCGAAGTTGGATTTGA
GGGTGGCTTTGAAGTGCGGGCGCCTCACTCTGCCGCAAGCAGGAAAGGAC
TGAGGAGAGGAAGAGGAAGGGGGAGAGAAGGGATAATGTAGCACCCAAGC
AAATATGGGTGTGAGGCGCGCGGGCAACTTCTACGCAGCTCTGGTTCCTA
AAACGTCACATGATAAAGCAGAGAAATTTTGGAGATAAA

protein sequence of NO06G03700.1

>NO06G03700.1-protein ID=NO06G03700.1-protein|Name=NO06G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MLDEWIETLQRGECIKEHELKKLCSLVKEILIEECNVQPVRSPVTVCGDI
HGQFYDLLKLFACGGEVPETSYIFMGDFVDRGHNSVETLTLLLCLKARYP
QHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAAL
IDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHDGPFCDMMWSDPEDIID
PWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSL
VTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVP
YFL*

protein sequence of NO06G03700.2

>NO06G03700.2-protein ID=NO06G03700.2-protein|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEE
CMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRT
IDRVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHV
NGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDE
NLNREFKMFKEVPESNMAEERRNLVPYFL*

Synonyms

Publications