|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1023703..1026641 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03700.2 vs.
Match: EWM26373.1 (phytochrome-associated serine threonine protein phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 476.9 bits (1226), Expect = 3.600e-131 Identity = 221/229 (96.51%), Postives = 224/229 (97.82%), Query Frame = 0
Query: 1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
MGDFVDRGHNSVETLTLLLCLKARYPQ+MTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPH+GPFCDMMWSDPEDI DPWVISPRGAGYLFGSKVT+ FN VNGLELICRAHQLVMEGFKYHF ERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESN AEERRNLVPYFL
Sbjct: 75 MGDFVDRGHNSVETLTLLLCLKARYPQNMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHEGPFCDMMWSDPEDITDPWVISPRGAGYLFGSKVTREFNQVNGLELICRAHQLVMEGFKYHFAERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNQAEERRNLVPYFL 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp CAGCGAAAAGGCTTCTCTGGCGAAGGCATGAAGAGTTGGAGAGTCTATGG CAATGGCAGACGAAGCAGTCTGTCGCAGAGAGACAACCCACCAATCTCCC GTCTACCTCTTCTGTATACAGGTGCTTACATGTAGACGTGATTTCCAGGG TGTGTTCGATGAAAATAAGGAAATGGCAACCTCCTCTCTCCAAGCTCCAC CACAGCTGCGTACTGGCTGTGATGACGATGAGCATTCACTGCAACAGCAC TCTCCACAAAGTCAATCAACCCCATGCCACCACAGGAATTAACAGGGAAC TTGATAAGCTCAAAGGCTTTCGGGTTGCTGACTTCACGGTTCCCTATGCC GCCACTTTTGTTTTTTCAAGCCCCCATTCTAACTCTCCCTCATATACACC ACCACTATGAAAATTGGACAGAGACCTAGCACTTTCAGACACTCCCTATG CTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCA CGAACTGAAGAAGCTATGTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTG TTGCCTTCCCGCTACTCCCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGG TCCACCACATCTGGCCTCGTCTCCCTCCAGGCTAGTGCATACCGTGAATA TCCGCTTCCTTTATATTGTTATCCTCAGCTGCTGCACAAAGCTAACCGAA GCCTCTATCCATTGCTCCTTCCAACCCAACATCTCCTCCCCCCCGCCTTC CCGTCATCCTTCCCTACATACCCATTCTAACCCTGGCGGCTCCCTCCTCT TCTCTCCCCGCACAAACCCAAAACAAAGGTGAAAGAAATTCTTATCGAAG AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA GGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACGGCAATGCCAACG CCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAACCTGGCCGCATTG ATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTCTCCAGAGATTAG GACGGTGGATCAGATCCGCACCATCGACCGTGTCCAGGAAATCCCGCACG ACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGACATAATTGAC CCGTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATTCGGAAGCAAGGT TACGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCAC ATCAACTAGTTATGGAAGGCTTCAAATACCATTTCCCCGAGCGCTCGCTC GTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCGGTAATGTCGC GGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTCAAGATGTTCA AGGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCTCGTACCT TACTTCCTGTAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAGGGACGGA GGGACGGAGGGGCGAGGACAATGATTTTGCAAGGAGGGAGAAGTGGGGGT GGTGTGTACACAGGAGAGATCAAATTCCAATAAGTGAAAGGGAAGAGCGG ACGGCCTCGCGTGTGTGTGTGAGAGATATATTCAAGAAGATAGAGAAGAA AAGAAAGCGGAAGGGAATGCCCTTTCGCTCCTGTTTGCGTGTGAAATCAT TTTTGTAGTGAGATGATGATGTAATCCTCGAAGTTGGATTTGAGGGTGGC TTTGAAGTGCGGGCGCCTCACTCTGCCGCAAGCAGGAAAGGACTGAGGAG AGGAAGAGGAAGGGGGAGAGAAGGGATAATGTAGCACCCAAGCAAATATG GGTGTGAGGCGCGCGGGCAACTTCTACGCAGCTCTGGTTCCTAAAACGTC ACATGATAAAGCAGAGAAATTTTGGAGATAAA back to topprotein sequence of NO06G03700.2 >NO06G03700.2-protein ID=NO06G03700.2-protein|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEE CMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRT IDRVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHV NGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDE NLNREFKMFKEVPESNMAEERRNLVPYFL* back to topmRNA from alignment at chr6:1023703..1026641+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2939bp|location=Sequence derived from alignment at chr6:1023703..1026641+ (Nannochloropsis oceanica) CAGCGAAAAGGCTTCTCTGGCGAAGGCATGAAGAGTTGGAGAGTCTATGG
CAATGGCAGACGAAGCAGTCTGTCGCAGAGAGACAACCCACCAATCTCCC
GTCTACCTCTTCTGTATACAGGTGCTTACATGTAGACGTGATTTCCAGGG
TGTGTTCGATGAAAATAAGGAAATGGCAACCTCCTCTCTCCAAGCTCCAC
CACAGCTGCGTACTGGCTGTGATGACGATGAGCATTCACTGCAACAGCAC
TCTCCACAAAGTCAATCAACCCCATGCCACCACAGGAATTAACAGGGAAC
TTGATAAGCTCAAAGGCTTTCGGGTTGCTGACTTCACGGTTCCCTATGCC
GCCACTTTTGTTTTTTCAAGCCCCCATTCTAACTCTCCCTCATATACACC
ACCACTATGAAAATTGGACAGAGACCTAGCACTTTCAGACACTCCCTATG
CTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCA
CGAACTGAAGAAGCTATGTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTG
TTGCCTTCCCGCTACTCCCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGG
TCCACCACATCTGGCCTCGTCTCCCTCCAGGCTAGTGCATACCGTGAATA
TCCGCTTCCTTTATATTGTTATCCTCAGCTGCTGCACAAAGCTAACCGAA
GCCTCTATCCATTGCTCCTTCCAACCCAACATCTCCTCCCCCCCGCCTTC
CCGTCATCCTTCCCTACATACCCATTCTAACCCTGGCGGCTCCCTCCTCT
TCTCTCCCCGCACAAACCCAAAACAAAGGTGAAAGAAATTCTTATCGAAG
AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC
CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT
GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA
ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC
CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA
GGTAAAGGGGGAGGGGGGCGGGAGGGATGGAAAGGACGCTGTTTTTTTGT
GCGAAATGTAGACATATGTCGGTACGATAATTTCCGAATCCATTTCTCCA
TTCCTCCCTCCTTTCCCCCCCCCCCTCCAGGTGTACGGTTTCTACGAGGA
GTGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACG
TGTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGC
GTGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGGTATAAGC
CTTGCCCTTAACCCTCCCGCCCTTCATTGACTCCCTTCCTTCTTCTGGTC
TTGTCTTTTTCCTTCTTTATCTCACCTCAGCCCACACACCTTGCCAGTTC
TCTCTTTCGCCACGTATCTCTCTTGATTTTTCATGACTTTCGATCAACAA
CATGCGCCTTTCCCCTCCTGGTTGCTCAATACATCTCAATATATCCTCTC
TTCCCGCATTTACTCCCGCTCTCGTTCAGATCCGCACCATCGACCGTGTC
CAGGAAATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAGTGACCC
CGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGTGAGGGAGGGAGG
GAAGGGAGGGAGAAAAGGAGGGAAGGAGGGGCATGGATGGCTGGAGGTCC
ACGACCTGTGTAATAAAAGAGGAAGGAGGAGAAAAGAGGACAAAGATCAT
CACTAGAGCTCATGGTGTTTGTCGTCCTTCCGTTCATGTTTCTGATTACC
CTTCTATCCAGGGGTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGC
TTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAG
TTATGGAAGGTGAGTAGCCTCCACCTCCCATCTAATTTCCTCCTTTCTTC
CCTTTCTCCCTCCATTCATTTTTTCTGGTTGACTCGTTGCAGCGTGATAA
CGATAGTTACCCCTGTAATCCCGGCATCTGATCGTCCCCCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCAGGCTTCAAATACC
ATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACTGC
TATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAA
CCGAGAGTTCAAGATGTTCAAGGGTAAGGAGGGAGGGAGAGAGACTTATT
ACCGTTTTTTCGATCGGTCGCCTCACTCTTTCCTTCCCTCCCTACCTCCC
TTTCCTACAGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCT
CGTACCTTACTTCCTGTAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAG
GGACGGAGGGACGGAGGGGCGAGGACAATGATTTTGCAAGGAGGGAGAAG
TGGGGGTGGTGTGTACACAGGAGAGATCAAATTCCAATAAGTGAAAGGGA
AGAGCGGACGGCCTCGCGTGTGTGTGTGAGAGATATATTCAAGAAGATAG
AGAAGAAAAGAAAGCGGAAGGGAATGCCCTTTCGCTCCTGTTTGCGTGTG
AAATCATTTTTGTAGTGAGATGATGATGTAATCCTCGAAGTTGGATTTGA
GGGTGGCTTTGAAGTGCGGGCGCCTCACTCTGCCGCAAGCAGGAAAGGAC
TGAGGAGAGGAAGAGGAAGGGGGAGAGAAGGGATAATGTAGCACCCAAGC
AAATATGGGTGTGAGGCGCGCGGGCAACTTCTACGCAGCTCTGGTTCCTA
AAACGTCACATGATAAAGCAGAGAAATTTTGGAGATAAA back to topCoding sequence (CDS) from alignment at chr6:1023703..1026641+ >NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr6:1023703..1026641+ (Nannochloropsis oceanica) ATGGGGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTGACATT ACTGCTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTTGCGCG GGAATCATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCTACGAGGAG TGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACGT GTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGCG TGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGATCCGCACC ATCGACCGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGTGATATGAT GTGGAGTGACCCCGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGG GTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACGTG AACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGCTT CAAATACCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCA ACTACTGCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAG AACCTGAACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAGAGCAACAT GGCGGAGGAACGGAGAAACCTCGTACCTTACTTCCTGTAA back to top
|