NO06G03700.2, NO06G03700.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03700.2
Unique NameNO06G03700.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2132
Alignment locationchr6:1023703..1026641 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1023703..1026641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G03700.2 vs.
Match: EWM26373.1 (phytochrome-associated serine threonine protein phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 476.9 bits (1226), Expect = 3.600e-131
Identity = 221/229 (96.51%), Postives = 224/229 (97.82%), Query Frame = 0
Query:    1 MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVPYFL 230
            MGDFVDRGHNSVETLTLLLCLKARYPQ+MTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPH+GPFCDMMWSDPEDI DPWVISPRGAGYLFGSKVT+ FN VNGLELICRAHQLVMEGFKYHF ERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESN AEERRNLVPYFL
Sbjct:   75 MGDFVDRGHNSVETLTLLLCLKARYPQNMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHEGPFCDMMWSDPEDITDPWVISPRGAGYLFGSKVTREFNQVNGLELICRAHQLVMEGFKYHFAERSLVTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNQAEERRNLVPYFL 303          
The following BLAST results are available for this feature:
BLAST of NO06G03700.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26373.13.600e-13196.51phytochrome-associated serine threonine protein ph... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03700NO06G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03700.2NO06G03700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03700.2.cds1NO06G03700.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03700.2.cds2NO06G03700.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03700.2.cds3NO06G03700.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03700.2.cds4NO06G03700.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03700.2.cds5NO06G03700.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03700.2.cds6NO06G03700.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp
CAGCGAAAAGGCTTCTCTGGCGAAGGCATGAAGAGTTGGAGAGTCTATGG
CAATGGCAGACGAAGCAGTCTGTCGCAGAGAGACAACCCACCAATCTCCC
GTCTACCTCTTCTGTATACAGGTGCTTACATGTAGACGTGATTTCCAGGG
TGTGTTCGATGAAAATAAGGAAATGGCAACCTCCTCTCTCCAAGCTCCAC
CACAGCTGCGTACTGGCTGTGATGACGATGAGCATTCACTGCAACAGCAC
TCTCCACAAAGTCAATCAACCCCATGCCACCACAGGAATTAACAGGGAAC
TTGATAAGCTCAAAGGCTTTCGGGTTGCTGACTTCACGGTTCCCTATGCC
GCCACTTTTGTTTTTTCAAGCCCCCATTCTAACTCTCCCTCATATACACC
ACCACTATGAAAATTGGACAGAGACCTAGCACTTTCAGACACTCCCTATG
CTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCA
CGAACTGAAGAAGCTATGTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTG
TTGCCTTCCCGCTACTCCCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGG
TCCACCACATCTGGCCTCGTCTCCCTCCAGGCTAGTGCATACCGTGAATA
TCCGCTTCCTTTATATTGTTATCCTCAGCTGCTGCACAAAGCTAACCGAA
GCCTCTATCCATTGCTCCTTCCAACCCAACATCTCCTCCCCCCCGCCTTC
CCGTCATCCTTCCCTACATACCCATTCTAACCCTGGCGGCTCCCTCCTCT
TCTCTCCCCGCACAAACCCAAAACAAAGGTGAAAGAAATTCTTATCGAAG
AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC
CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT
GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA
ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC
CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA
GGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACGGCAATGCCAACG
CCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAACCTGGCCGCATTG
ATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTCTCCAGAGATTAG
GACGGTGGATCAGATCCGCACCATCGACCGTGTCCAGGAAATCCCGCACG
ACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGACATAATTGAC
CCGTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATTCGGAAGCAAGGT
TACGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCAC
ATCAACTAGTTATGGAAGGCTTCAAATACCATTTCCCCGAGCGCTCGCTC
GTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCGGTAATGTCGC
GGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTCAAGATGTTCA
AGGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCTCGTACCT
TACTTCCTGTAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAGGGACGGA
GGGACGGAGGGGCGAGGACAATGATTTTGCAAGGAGGGAGAAGTGGGGGT
GGTGTGTACACAGGAGAGATCAAATTCCAATAAGTGAAAGGGAAGAGCGG
ACGGCCTCGCGTGTGTGTGTGAGAGATATATTCAAGAAGATAGAGAAGAA
AAGAAAGCGGAAGGGAATGCCCTTTCGCTCCTGTTTGCGTGTGAAATCAT
TTTTGTAGTGAGATGATGATGTAATCCTCGAAGTTGGATTTGAGGGTGGC
TTTGAAGTGCGGGCGCCTCACTCTGCCGCAAGCAGGAAAGGACTGAGGAG
AGGAAGAGGAAGGGGGAGAGAAGGGATAATGTAGCACCCAAGCAAATATG
GGTGTGAGGCGCGCGGGCAACTTCTACGCAGCTCTGGTTCCTAAAACGTC
ACATGATAAAGCAGAGAAATTTTGGAGATAAA
back to top

protein sequence of NO06G03700.2

>NO06G03700.2-protein ID=NO06G03700.2-protein|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGDFVDRGHNSVETLTLLLCLKARYPQHMTLLRGNHESRQITQVYGFYEE
CMRKYGNANAWKYCVDVFDYLNLAALIDGQVLCVHGGLSPEIRTVDQIRT
IDRVQEIPHDGPFCDMMWSDPEDIIDPWVISPRGAGYLFGSKVTQAFNHV
NGLELICRAHQLVMEGFKYHFPERSLVTVWSAPNYCYRCGNVAAVLAFDE
NLNREFKMFKEVPESNMAEERRNLVPYFL*
back to top

mRNA from alignment at chr6:1023703..1026641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2939bp|location=Sequence derived from alignment at chr6:1023703..1026641+ (Nannochloropsis oceanica)
CAGCGAAAAGGCTTCTCTGGCGAAGGCATGAAGAGTTGGAGAGTCTATGG CAATGGCAGACGAAGCAGTCTGTCGCAGAGAGACAACCCACCAATCTCCC GTCTACCTCTTCTGTATACAGGTGCTTACATGTAGACGTGATTTCCAGGG TGTGTTCGATGAAAATAAGGAAATGGCAACCTCCTCTCTCCAAGCTCCAC CACAGCTGCGTACTGGCTGTGATGACGATGAGCATTCACTGCAACAGCAC TCTCCACAAAGTCAATCAACCCCATGCCACCACAGGAATTAACAGGGAAC TTGATAAGCTCAAAGGCTTTCGGGTTGCTGACTTCACGGTTCCCTATGCC GCCACTTTTGTTTTTTCAAGCCCCCATTCTAACTCTCCCTCATATACACC ACCACTATGAAAATTGGACAGAGACCTAGCACTTTCAGACACTCCCTATG CTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCA CGAACTGAAGAAGCTATGTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTG TTGCCTTCCCGCTACTCCCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGG TCCACCACATCTGGCCTCGTCTCCCTCCAGGCTAGTGCATACCGTGAATA TCCGCTTCCTTTATATTGTTATCCTCAGCTGCTGCACAAAGCTAACCGAA GCCTCTATCCATTGCTCCTTCCAACCCAACATCTCCTCCCCCCCGCCTTC CCGTCATCCTTCCCTACATACCCATTCTAACCCTGGCGGCTCCCTCCTCT TCTCTCCCCGCACAAACCCAAAACAAAGGTGAAAGAAATTCTTATCGAAG AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA GGTAAAGGGGGAGGGGGGCGGGAGGGATGGAAAGGACGCTGTTTTTTTGT GCGAAATGTAGACATATGTCGGTACGATAATTTCCGAATCCATTTCTCCA TTCCTCCCTCCTTTCCCCCCCCCCCTCCAGGTGTACGGTTTCTACGAGGA GTGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACG TGTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGC GTGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGGTATAAGC CTTGCCCTTAACCCTCCCGCCCTTCATTGACTCCCTTCCTTCTTCTGGTC TTGTCTTTTTCCTTCTTTATCTCACCTCAGCCCACACACCTTGCCAGTTC TCTCTTTCGCCACGTATCTCTCTTGATTTTTCATGACTTTCGATCAACAA CATGCGCCTTTCCCCTCCTGGTTGCTCAATACATCTCAATATATCCTCTC TTCCCGCATTTACTCCCGCTCTCGTTCAGATCCGCACCATCGACCGTGTC CAGGAAATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAGTGACCC CGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGTGAGGGAGGGAGG GAAGGGAGGGAGAAAAGGAGGGAAGGAGGGGCATGGATGGCTGGAGGTCC ACGACCTGTGTAATAAAAGAGGAAGGAGGAGAAAAGAGGACAAAGATCAT CACTAGAGCTCATGGTGTTTGTCGTCCTTCCGTTCATGTTTCTGATTACC CTTCTATCCAGGGGTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGC TTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAG TTATGGAAGGTGAGTAGCCTCCACCTCCCATCTAATTTCCTCCTTTCTTC CCTTTCTCCCTCCATTCATTTTTTCTGGTTGACTCGTTGCAGCGTGATAA CGATAGTTACCCCTGTAATCCCGGCATCTGATCGTCCCCCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCAGGCTTCAAATACC ATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACTGC TATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAA CCGAGAGTTCAAGATGTTCAAGGGTAAGGAGGGAGGGAGAGAGACTTATT ACCGTTTTTTCGATCGGTCGCCTCACTCTTTCCTTCCCTCCCTACCTCCC TTTCCTACAGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCT CGTACCTTACTTCCTGTAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAG GGACGGAGGGACGGAGGGGCGAGGACAATGATTTTGCAAGGAGGGAGAAG TGGGGGTGGTGTGTACACAGGAGAGATCAAATTCCAATAAGTGAAAGGGA AGAGCGGACGGCCTCGCGTGTGTGTGTGAGAGATATATTCAAGAAGATAG AGAAGAAAAGAAAGCGGAAGGGAATGCCCTTTCGCTCCTGTTTGCGTGTG AAATCATTTTTGTAGTGAGATGATGATGTAATCCTCGAAGTTGGATTTGA GGGTGGCTTTGAAGTGCGGGCGCCTCACTCTGCCGCAAGCAGGAAAGGAC TGAGGAGAGGAAGAGGAAGGGGGAGAGAAGGGATAATGTAGCACCCAAGC AAATATGGGTGTGAGGCGCGCGGGCAACTTCTACGCAGCTCTGGTTCCTA AAACGTCACATGATAAAGCAGAGAAATTTTGGAGATAAA
back to top

Coding sequence (CDS) from alignment at chr6:1023703..1026641+

>NO06G03700.2 ID=NO06G03700.2|Name=NO06G03700.2|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr6:1023703..1026641+ (Nannochloropsis oceanica)
ATGGGGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTGACATT
ACTGCTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTTGCGCG
GGAATCATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCTACGAGGAG
TGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACGT
GTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGCG
TGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGATCCGCACC
ATCGACCGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGTGATATGAT
GTGGAGTGACCCCGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGG
GTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACGTG
AACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGCTT
CAAATACCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCA
ACTACTGCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAG
AACCTGAACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAGAGCAACAT
GGCGGAGGAACGGAGAAACCTCGTACCTTACTTCCTGTAA
back to top
Synonyms
Publications