NO06G03610, NO06G03610 (gene) Nannochloropsis oceanica

Overview
NameNO06G03610
Unique NameNO06G03610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2279
Alignment locationchr6:991225..993503 +

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Properties
Property NameValue
DescriptionPolyadenylate-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:991225..993503 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO06G03610 vs. NCBI_GenBank
Match: EWM26387.1 (polyadenylate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 8.700e-44
Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = 0
Query:   43 MKRGRIEEPVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKARAKSIQQ--GGRRDGR 189
            MKR R E      G         D A+DPLAGR  P LF+GSLAKSVQEKDVL LFLP+GK+VDIAFFWHMHGPRKGEPKG+CF+T+A TE+AT+AI+AL+  RLHGR+IAVRYQRDAD+    AR+++ KARAKS+QQ  GG R GR
Sbjct:    1 MKRRREE------GAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGR 142          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_005852688.1 (hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526] >XP_005855784.1 hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >EKU20575.1 hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >EKU23145.1 hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.8 bits (434), Expect = 2.900e-39
Identity = 80/110 (72.73%), Postives = 97/110 (88.18%), Query Frame = 0
Query:   66 DLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKAR 176
            D A+DPLAGR  P LF+GSLAKSVQEKDVL LFLP+GK+VDIAFFWHMHGPRKGEPKG+CF+T++ TE+AT+AI+AL+  RLHGR+IAVRYQRDAD+    AR+++ KAR
Sbjct:    2 DPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDARTLLSKAR 111          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: CBN75336.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1 bits (209), Expect = 3.600e-13
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   74 GRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEG 164
            G  + TLFVG+L+  V E  ++ LF PFGK+V   F +H  GPR GEP+G+CF+ +++ +DA  AI+AL+  +L+GR + VR+     +G
Sbjct:  122 GIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKG 211          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_016607667.1 (hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117] >KNC99627.1 hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 84.7 bits (208), Expect = 4.700e-13
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   62 PAAPDLADDPLAGRASPT----LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGG 165
            PA P     P+      T    L+VG+L  ++ E +++TLF P GKI  I + WH HGPRKGEP+GYCF+ +    DA  A+ A+N   + GR + V +  D  + G
Sbjct:   28 PAPPPSVPAPITNVTPNTPQTRLYVGNLPPTLTEYNLITLFAPHGKIRKIDYLWHKHGPRKGEPRGYCFVEYERRVDAVGAVAAMNGRVVGGRKLTVGFSVDHGQDG 134          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: SAM02948.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARS 170
            L++G+L  +V E  V+ LF P+GKIV   F + +HGP+KG+P+GYCFL +   +DA AAI A+N  ++ GR + V     + +   G  S
Sbjct:    6 LYIGNLDSTVDEYAVIKLFEPYGKIVVFEFMFFLHGPKKGQPRGYCFLEYEKRQDALAAISAMNGKKIKGRPMVVSAANKSTQPEGGGNS 95          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: ORZ21081.1 (hypothetical protein BCR42DRAFT_406783 [Absidia repens])

HSP 1 Score: 80.9 bits (198), Expect = 6.700e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query:   80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAV 155
            +++G+L  SV E  V+ LF PFGKIV   F + +HGP+KG+P+GYCFL +    +A  AI ALN  R+ GR + V
Sbjct:    6 IYIGNLDPSVDEYAVIKLFEPFGKIVVFDFMFFLHGPKKGQPRGYCFLEYEKKPEALTAISALNGKRIKGRPLVV 80          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: OZJ03837.1 (hypothetical protein BZG36_04312 [Bifiguratus adelaidae])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 0
Query:   80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRY-----QRDADEGGN 166
            L+VG+L  ++ E  ++ LF PFGKI  + F +H+ GPRKG+P+GYCFL +A+  +A  AI A++   + GR + V +      +D D+ G+
Sbjct:   11 LYVGNLDSTIDEYSIVKLFEPFGKITSLDFLFHLTGPRKGQPRGYCFLEYANKTEALQAISAMHRKTIKGRPLVVTFAHAAKDQDRDQKGS 101          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_020585709.1 (probable RNA-binding protein 18 [Phalaenopsis equestris] >XP_020585710.1 probable RNA-binding protein 18 [Phalaenopsis equestris])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0
Query:   80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADE 163
            L+VG+L + + E +V+ +F PFGKI+   F WH  GP+KGEP+GY F+ +   E+A  A   +N    +GR + VRY   ADE
Sbjct:   10 LYVGNLDQRITEANVIKMFSPFGKIISEDFLWHTRGPKKGEPRGYAFIQYGSKEEAQLAKTEMNGKLAYGRPLVVRY---ADE 89          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: KXS13582.1 (RNA-binding domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 79.3 bits (194), Expect = 2.000e-11
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   73 AGRASPT-----LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRD 160
            A R +PT     L++G++  SV E  ++ LF PFGKI  I + WH +GP +G+PKG+CFL +   E+A  AIK+++  ++ G+ + V +  D
Sbjct:   35 AERRAPTILDKRLYIGNIDSSVAEYHIIKLFQPFGKITRIDYMWHKYGPHRGQPKGFCFLEYETHENAMNAIKSMDGKQVKGKHLVVSFSFD 126          
BLAST of NO06G03610 vs. NCBI_GenBank
Match: OSD07902.1 (RNA-binding domain-containing protein [Trametes coccinea BRFM310])

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0
Query:   80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKAR 176
            L+VG+L  +V E  +L LF  FGKI  + F +H  GP KG+P+GY F+ FA+  DA  A+   ND  L GR I V Y   A     GA+ +  K R
Sbjct:   67 LYVGNLHPTVDEYTLLQLFSKFGKIAKLDFLFHKSGPLKGKPRGYAFIEFANQGDAEKALLHANDKLLRGRKIVVTYANQAPLDAGGAQGLGSKNR 162          
The following BLAST results are available for this feature:
BLAST of NO06G03610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26387.18.700e-4465.54polyadenylate-binding protein [Nannochloropsis gad... [more]
XP_005852688.12.900e-3972.73hypothetical protein NGA_2120320, partial [Nannoch... [more]
CBN75336.13.600e-1343.33conserved unknown protein [Ectocarpus siliculosus][more]
XP_016607667.14.700e-1339.25hypothetical protein SPPG_05013 [Spizellomyces pun... [more]
SAM02948.13.000e-1241.11hypothetical protein [Absidia glauca][more]
ORZ21081.16.700e-1248.00hypothetical protein BCR42DRAFT_406783 [Absidia re... [more]
OZJ03837.11.100e-1139.56hypothetical protein BZG36_04312 [Bifiguratus adel... [more]
XP_020585709.11.500e-1143.37probable RNA-binding protein 18 [Phalaenopsis eque... [more]
KXS13582.12.000e-1139.13RNA-binding domain-containing protein [Gonapodya p... [more]
OSD07902.14.400e-1142.71RNA-binding domain-containing protein [Trametes co... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03610.1NO06G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597718gene_6688Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100031g5gene4171Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03610.1NO06G03610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03610 ID=NO06G03610|Name=NO06G03610|organism=Nannochloropsis oceanica|type=gene|length=2279bp
TAATCAAACAGACTTGTGTTTTTACTCCTTCCCCTCCCCCCTTTTAACCA
CTTTTCCTCTTCCTCTTCATAAACATCATCTATATATATCCCCCTTCTTC
GTGTTGAACGGGGTGGCCATGCTATTCACCATCCGCACACTCCTCGAGAT
CACCGTACCCGTCGGGTTGACACTCAACCCCCTCGCGGTTTGCCTCAATC
TTGTACTCATCTCATCCAACTCCTCCCTCTCATCCTCGGGGAAAACCATA
CGTTTCTCCGTTGCGGCTTTGAATAAATCTTCAATCGAAGGCTTAGCCCA
CGAGTGGAAGTTATGCCGAAGGGCTGTGGCGAGACAAGCGAGAATGGCTC
TCCTTCGTTCCTTATCTGCGTAAGTCTCTTGTTCGTCGTCTATCGCTTGC
AACGCAACAATGTACTCCTTGATATTCCGCGCCGCGCGGCGGAACTCAAA
GGTATCATCCGTCAACATCTCCGACCGCAGTAATCCTAGCAAAATCCATG
TTGCTGCGCGATATTGTTCTTCCGGACCAAAAAGGAGGATGTGCTCCTTA
ACCAACGACAAGAGCTGGACAGCCTGCGCCCTGTCCTCGGCTGCGGGCCC
TAGTAACCGGTCCCACGTGCCATCGACCGCCATAAAAAATGCGATGGTCG
CATGAAATTGTGCAGCGTTTTCTGCATTGATATTTCCTGTCATTAACTTG
GTCAGCAAGCCCAGTGCCTTCCGACTCTTTTCCAGCTTGGTCGAGGTCAA
AGCGCGTGTGATTTTATCAAGGGCTTCTTCGAGGTCTAACGTGGCCGGCT
TGATGGCAGCGGCTGTCGTTTTGCCATTGTCATCCTGGTTCTCTTGTCGT
GCACGTTTCTTGGTGCTGGTAGGGCTACCGTCCTTTTCTTGCGGCTTCTT
CTGATCTTTGTCGGTGTGGGGGGGAGCGGGTCGCTTCTGCTGCCGTTGTG
TCTCGTTCGTGATATTAAGCTCCTCCTTCTTGGCCGCTGCCGGCAGGTCA
CCAAAGAGACCATCAAAAGGATCCGCCATTACTGTGGCTGTGGCTGTAGT
TGTCTGTGTGTAGCCGGTAAATCTGTCTGTTAGCACAAATGTGATGTATG
GAGAAGCTCCACGCCCCAACACTTTCCCCGTCTCGCCGCAATCATCATAC
CACCGCTAATCCTTTACCATGCGGCCCCACACCCCCCGTATCACCTCCCT
ACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAGCCA
GTGGTCAGTGTTGGTGGAACAAAAGgtaagcggggacatgaattgaaggg
tggggctgtactgtcatgtgttctttgacggcatggtagaaaggggatgg
caacaaaacgtgagccgttggctggttggctggaggcacacatcattgca
gtattgtctgtttgggagctgcggcacgtggatgagttggccacgtgaaa
tgtagtgtgtgttcgttgtccttccgcctctctccccgaccaagccacag
cacacaccacaccgtcctcccacaccaaacagCTACGCCCGCGGCGCCCG
ACCTCGCCGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTT
GGTTCCCTTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCT
CCCCTTCGGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCC
CGCGGAAAGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACA
GAGGATGCCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGG
TCGAGCGATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATG
GCGCAAGGTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGC
GGAAGAAGAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAAC
AGAAGGATCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAA
AACGGTCAAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGG
GGAAGGGAGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCAT
GCTAAGATTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGG
GGTGAGAGATTAATCTGTAAGTCGCATTTCGCAAAGACTTGTGAGTATTA
CAGACAACTGTGCGCTTGTTCTAAAAATCAGGGGGAGGAGAAACTTTAAA
AAAACAAAAGTAAGGGTGGCAAAAGCGGG
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protein sequence of NO06G03610.1

>NO06G03610.1-protein ID=NO06G03610.1-protein|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MEKLHAPTLSPSRRNHHTTANPLPCGPTPPVSPPYRSHPSTLMKRGRIEE
PVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLP
FGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGR
AIAVRYQRDADEGGNGARSMVFKARAKSIQQGGRRDGRGVGGEGKDNRTE
GSRAAAAGVASVALPKRSKLASTAAAERGGNGGREGEEEESALEAKIRML
RFQIAASSGGGGGGRG*
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Synonyms
Publications